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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013405 ID=TCONS_00013405|Name=TCONS_00013405|organism=Clytia hemisphaerica|type=transcript|length=1306bp
CTCTGTTGCGTTTAATTATAAGATGAACACTGTTTCGATCATCAAGGCAC
TGCGATTTGGAAAGGATTGGGAAGATCAAAGAGGGTTACAAGTGCGAGTT
GTTAAAATTTCGAGAGACATTTTGGATTAATTGAATGCTGACTGTTATCT
CCGGACCATAATTTATCACAAAGGATCTCAGGAAAGATGACGAGTATATA
CGTGGACAAAACGTTGTATCAAAATGTTGATTATGTTTTAAAAGAACTAc
agaagaaattcaaaaatcgaACTTTACGCATGTCGGATTTTGAAATTAAT
GTTTCAAAACTTTGTGATGAAGATTTTTCTACAGAGGATCAAATGATGAG
TAGCGACCTGGGAACGGACTTAGAATTAGACTTTGATGGGGGAGAaatca
aaatgacgtcatcgaggAAAAGTACGTCACCTTTAGTTAAACAACTTTCA
AAGGAGGAAATGGAATTCCGAGATCACATGGAAACCATCATGTCGgtttt
tgaaaacgaaacaaAACAATTAGATTCCAAGATAGACACAGAACGTAAAC
GAATACAGAAGAAATATCAAGCAAATTTGAACATCGAAGTTCAAAAACGA
ACATTACAATTAAACGAAACtattaaaaacttgaaaaatcgtATTGAAGT
GCTTGAAAGTGAAATGGACGAACTGGTTATAAGTTTCAAACAAGAGAAGA
AAGGTTTAGATGAACTTTATCAAAATGAAATGAAGAGAAAGTTATTACAA
TTGAAGATGAATAATGACGATTGGCCTAAAACCAAAGTTTGAGTAGAACT
ATACTCCAAGAAGTCATTTTGTGTCGAGGGGATTAAAAAATACATTCgag
attttttatgttttgttaaaggttttgtttttacataattgttaccgttt
catatcagacacatatttcatatcaggacagtgtttgcctattgttttat
tatgctgatatttaagcaaaaaaataaatgtttattttttcctctttctg
accaatcttgctccatatccatttcaatccaatgtgaaaaagcttgtgaa
ttaaaattgatgagaaaGCAAAGGATATccattcttatttaaaaacaaaa
cctttattcCGCTACTTGGAAGCAAACGGTCGATTTGCATAAGGGAACAC
CTACTTTAGgggtacaaactttcgcgatttttgcgaattttagccctttt
cgtgaaagtaaatgtctttgaaaattccttAGAGGGtagttcgcgaaagt
ttatgcgcgcgaaaaaaaatctctgaaaagaaaatttacttaaATTTTCC
TCTTCG Run BLAST on NCBI transcript from alignment at sc0000167:46784..52155- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013405 ID=TCONS_00013405|Name=TCONS_00013405|organism=Clytia hemisphaerica|type=transcript|length=5372bp|location=Sequence derived from alignment at sc0000167:46784..52155- (Clytia hemisphaerica)
CTCTGTTGCGTTTAATTATAAGGTATTCAAATTTTCTTTTTATAGGAACA
TTAGAATTTGGCTTTAATAATCTATGTCTATGAAGTGTCAAATGATGTGA
AAAACACCAAGGCTGATAAAAATAATAGTCTAACGTTATGTTGTTTTGGT
AAGGTCTAGTTTGAGTGTGGCATGTTTGCCTGAGATCTCGAGTGCACAAC
TCGGAAAAAATCGAGTGCAGGTGCAATTTTTTTCAGGTTTTCATGTGCAA
GTGCAGAGGGTTTTTTAACCGCAAATGCAGAGTTCTGCTATTTTCTCAAT
AAGTGCAGCTAATATTAGCAATTTTTTTGCCTTTTTGGGCAATTGTTTCG
AGGTATAAGTGCACCCTTGTCCGGACCAAAATGTATCAGGTGCGCTTTTC
CAGTGAGGAAGTTGGTATTTCCGAATTTTTCCTTGAGTGCAGCCTTGCCA
TACTCTGCAAACTGGGGTAAGGTGATATTATGTTTCTTGAGATATAGTTG
CATTCTCAAAACAGACTAAAGAAATCAATCTAACAACTTTCTAGGTTATT
TGAATCAACAGTTCCACCATTGGATCAAAGTCAAGTGATTTAACTGTTTA
ACTTTCCTTTGTAATGTTGGTATCACTTGCTATTTGATGTACAGAATCAT
TTAATTGGGGTACCAATTTTTGCATCTAATGATAAGAAGAGGGAGACCCT
AGATTTTGAGAGCCATCGATGCCCGGGGCAAAGGACCGACGGGTATGTGC
GGGTCCTAAGGGTACCTTTTGCAATATGTTTAAAATGCACTGTAAGGGTC
GGAAAAACTAGAGATGCACTGTAAGGGTAGAAATTTCAGAAAATTCTTGA
AAAATCTAGATATTTTGACCAAAAATGCTGGAATTTTTACCAATTTTCGC
ACGAAAGGGATCGAAAATTTGGGGGAGAATGCACTCTAAGGGTATGATTT
TCACTGATTTTTGCTGCACTGTAAGGGTGCAATCTTAAAAGCCAATTTTT
GGCCCGCACATACCGTCAGTCCGCAAACCCAGTGCCCCCCCCCCGGGCAT
CGATGAACTAACTATTCTTGAAATATTTCAGGAAATTCCGATGGAAATTG
GATAACAACCTGATCATTATTCATGGTTCTCTAAAACTAAGTTTTGGTTT
TCTTGATTCTTGATTATAGAAACTAAAAAAGTAGACCATTGCATTTTCAA
AGTCGACCTCTAAAGAATTTTATCTCTAATTTTCTTACAAAAACCTCTTC
CAATGCAAAAAGTGCAAATGGCAGATGACAGATAATAGACACGTAATTAA
ATCTACCAATTACCATTTTAATAATCGACGTATCCAATCTATTGTCTCAA
AACAACCTCATCAAACTGTTAAACAATAGGTTCATACAATAGTCTGGTAA
TAATCAGCAACTTTTTTGAATAGATTCTCATTTATTCGATTTACCATGCG
TTTTAGTCTAATTAAGCTTTTCTTGTAATTTTTATCTTTCATAAAGAGAC
CGCTAATATTCAACATGTTTCGTCGTATTTATTGAATTAGATGTGTTTTA
TTTTTATGGCAGATGAACACTGTTTCGATCATCAAGGCACTGCGATTTGG
AAAGGATTGGGAAGATCAAAGAGGGTTACAAGTGCGAGTTGTTAAAATTT
CGAGAGGTATTATTCTTTTTCCATTTTTTTTAGCTTTTATCATTTCACGC
AGCACAATTTTTCAAATAGATTTCACTTTAAATCCATCTTTTGTATGTAT
GAAAACTGTTTCAGAAGGGAGATAACTGGTTTTATTTTCCATCTGAGAGT
TTCATCTCTCGGCCCTTCGGGGCTCGATTTAGATTCGAACTGTGACGACG
ACAAGTTTTTTTTTCAATACAAGAACTTGTTTAAAAAATGGATTTTTTCA
TTACAGTGCAGTGGTTTTTGATTTGATATCTCTGTCTTTCTGGTCGTCAG
AAGTTAGAAGAATATTTTCTTCTTTTTGAAAAGTTTGCCTCCATTACTAT
GTAATGTAATTAGTATTATTTTACCTGACCCCCATTATGCCGATTATCAT
AACATATTCTGAACTATCCTAAAACCTACTCCATTTAAATAAACCTGTAC
ATGTTTTACTAATTTCTAACAACTTTAGCCTGAAACGTTGGGCTGTAATT
TGGCTAAAACCTTAGAACAAATTGAGCCTCAGATTTCCAAAATTATGGAT
TTTTCCACCATTCCATTCATTAGAAACTCGAGAGTTTAAATGTTAAGGCC
AATTTCGTCCTAAAAGTTTTTCTATAAGAACAATGTTTAAATACAAGTAC
AGTTGACGCTCTCTACTAGTTCGACGTTCTACTATTCGATAGGCTGCCTT
ATTCTGCCTTATTCGATGAAATTTAAAGTCCCCGTCAACAGGAAACTCTC
ATAAACGACGCTCTCTTCTTCGATAAGCTCCCTTCTTCGATGAAAATCCA
ATTCCCCTNACTTTGATGGGGGAGAAATCAAAATGACGTCATCGAGGAAA
AGTACGTCACCTTTAGTTAAACAACTTTCAAAGGAGGAAATGGAATTCCG
AGATCACATGGAAACCATCATGTCGGTTTTTGAAAACGAAACAAAACAAT
TAGATTCCAAGATAGACACAGAACGTAAACGAATACAGAAGAAATATCAA
GCAAATTTGAACATCGAAGTTCAAAAACGAACATTACAATTAAACGAAAC
TATTAAAAACTTGAAAAATCGTATTGAAGTGCTTGAAAGTGAAATGGACG
AACTGGTTATAAGTTTCAAACAAGAGAAGAAAGGTTTAGATGAACTTTAT
CAAAATGAAATGAAGAGAAAGTTATTACAATTGAAGATGAATAATGACGA
TTGGCCTAAAACCAAAGTTTGAGTAGAACTATACTCCAAGAAGTCATTTT
GTGTCGAGGGGATTAAAAAATACATTCGAGATTTTTTATGTTTTGTTAAA
GGTTTTGTTTTTACATAATTGTTACCGTTTCATATCAGACACATATTTCA
TATCAGGACAGTGTTTGCCTATTGTTTTATTATGCTGATATTTAAGCAAA
AAAATAAATGTTTATTTTTTCCTCTTTCTGACCAATCTTGCTCCATATCC
ATTTCAATCCAATGTGAAAAAGCTTGTGAATTAAAATTGATGAGAAAGCA
AACGATATCCATTCTTATTTAAAAACAAAACCTTTATTCCGCTACTTGGA
AGCAAACGGTCGATTTGCATAAGGGAACACCTACTTTAGGGGTACAAACT
TTCGCGATTTTTGCGAATTTTAGCCCTTTTCGTGAAAGTAAATGTCTTTG
AAAATTCCTTAGAGGGTAGTTCGCGAAAGTTTATGCGCGCGAAAAAAAAT
CTCTGAAAAGAAAATTTACTTAAATTTTCCTCTTCGATGAAAACAAGGAT
AAAATTTTTTGTAGATATTATGCAAAAGTCCATCAATTGTGGTTTGAATA
CATTTAAGCGATCAAAACACTGGTTTTCTCACCGAAAACTTGAATTTTCT
ACTAAAAATATTTGTCAAATTCGCGAAAGTAAATGTCCTAGATTTCGCGA
TTTTTCTACCTCGCGAAAGTTTCTGCTCGCGAAAGTTTGTACGCCTAAAG
TATACAGATTTGAAGGTTTGCTTCCATAATGGCGGGATATTACGTAACTT
AACAAAACACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAACTCTCATAAACGACGCTC
TCTTCTTCGATAAGCTCCCTTCTTCGATGAAAATCCAATTCCCCTTGAAG
ATCGAATTAGAGAGCGTCAACTGTATACGCAGGGTGATATAGGGGTGGTT
GCTTATTAAAAGAAAAACATGTAATTGATTTCTGAAATTAATAAGAATAA
CGAAAACCTTGAAACATAATCTGGTTTGTAAAATACAGTACACATCGAGT
TCTTTAGAATTTTCTGTGGAACGGGTTAGAAATTGATGTGCACTTTTTCA
AACTCTTATTATTTGAGATTATCTTTTCAGAGTACAGTATCATCATTATA
AGTAAGGTAATTATCAACGATAGGTTCTCATTAAAAGATTTCCTCTGATT
AAACAAAAGCTTTTTTGATTACTTTTTTTCAGACATTTTGGATTAATTGA
ATGCTGACTGTTATCTCCGGACCATAATTTATCACAAAGGATCTCAGGAA
AGATGACGAGTATATACGTGGACAAAACGTTGTATCAAAATGTTGATTAT
GTTTTAAAAGAACTACAGAAGAAATTCAAAAATCGAACTTTACGCATGTC
GGATTTTGAAATTAATGTTTCAAAACTTTGTGATGAAGATTTTTCTACAG
AGGATCAAATGATGAGTAGCGACCTGGGAACGGACTTAGAATTAGACTTT
GATGGGGGAGAAATCAAAATGACGTCATCGAGGAAAAGTACGTCACCTTT
AGTTAAACAACTTTCAAAGGAGGAAATGGAATTCCGAGATCACATGGAAA
CCATCATGTCGGTTTTTGAAAACGAAACAAAACAATTAGATTCCAAGATA
GACACAGAACGTAAACGAATACAGAAGAAATATCAAGCAAATTTGAACAT
CGAAGTTCAAAAACGAACATTACAATTAAACGAAACTATTAAAAACTTGA
AAAATCGTATTGAAGTGCTTGAAAGTGAAATGGACGAACTGGTTATAAGT
TTCAAACAAGAGAAGAAAGGTTTAGATGAACTTTATCAAAATGAAATGAA
GAGAAAGTTATTACAATTGAAGATGAATAATGACGATTGGCCTAAAACCA
AAGTTTGAGTAGAACTATACTCCAAGAAGTCATTTTGTGTCGAGGGGATT
AAAAAATACATTCGAGATTTTTTATGTTTTGTTAAAGGTTTTGTTTTTAC
ATAATTGTTACCGTTTCATATCAGACACATATTTCATATCAGGACAGTGT
TTGCCTATTGTTTTATTATGCTGATATTTAAGCAAAAAAATAAATGTTTA
TTTTTTCCTCTTTCTGACCAATCTTGCTCCATATCCATTTCAATCCAATG
TGAAAAAGCTTGTGAATTAAAATTGATGAGAAAGCAAAGGATATCCATTC
TTATTTAAAAACAAAACCTTTATTCCGCTACTTGGAAGCAAACGGTCGAT
TTGCATAAGGGAACACCTACTTTAGGGGTACAAACTTTCGCGATTTTTGC
GAATTTTAGCCCTTTTCGTGAAAGTAAATGTCTTTGAAAATTCCTTAGAG
GGTAGTTCGCGAAAGTTTATGCGCGCGAAAAAAAATCTCTGAAAAGAAAA
TTTACTTAAATTTTCCTCTTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013405-exon-sc0000167-1575043694:52134..52155 | TCONS_00013405-exon-sc0000167-1575043694:52134..52155 | Clytia hemisphaerica | exon |
| TCONS_00013405-exon-sc0000167-1575043694:50500..50593 | TCONS_00013405-exon-sc0000167-1575043694:50500..50593 | Clytia hemisphaerica | exon |
| TCONS_00013405-exon-sc0000167-1575043694:46784..47973 | TCONS_00013405-exon-sc0000167-1575043694:46784..47973 | Clytia hemisphaerica | exon |
| TCONS_00013405-exon-sc0000167-1510915933:52134..52155 | TCONS_00013405-exon-sc0000167-1510915933:52134..52155 | Clytia hemisphaerica | exon |
| TCONS_00013405-exon-sc0000167-1510915933:50500..50593 | TCONS_00013405-exon-sc0000167-1510915933:50500..50593 | Clytia hemisphaerica | exon |
| TCONS_00013405-exon-sc0000167-1510915933:46784..47973 | TCONS_00013405-exon-sc0000167-1510915933:46784..47973 | Clytia hemisphaerica | exon |
| TCONS_00013405-exon-sc0000167-1491911889:52134..52155 | TCONS_00013405-exon-sc0000167-1491911889:52134..52155 | Clytia hemisphaerica | exon |
| TCONS_00013405-exon-sc0000167-1491911889:50500..50593 | TCONS_00013405-exon-sc0000167-1491911889:50500..50593 | Clytia hemisphaerica | exon |
| TCONS_00013405-exon-sc0000167-1491911889:46784..47973 | TCONS_00013405-exon-sc0000167-1491911889:46784..47973 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000167 | supercontig | sc0000167:46784..52155 - |
Blast
The following BLAST results are available for this feature:
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