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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013373 ID=TCONS_00013373|Name=TCONS_00013373|organism=Clytia hemisphaerica|type=transcript|length=4618bpRun BLAST on NCBI protein sequence of TCONS_00013373-protein >TCONS_00013373-protein ID=TCONS_00013373-protein|Name=TCONS_00013373-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1185bp MICDIMPTLSEDGDMPGDGSMEDNNFEQLMVNMLDERDKLMETLRETQESRun BLAST on NCBI transcript from alignment at sc0000167:174397..208997+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00013373 ID=TCONS_00013373|Name=TCONS_00013373|organism=Clytia hemisphaerica|type=transcript|length=34601bp|location=Sequence derived from alignment at sc0000167:174397..208997+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000167:174397..208997+ >TCONS_00013373 ID=TCONS_00013373|Name=TCONS_00013373|organism=Clytia hemisphaerica|type=CDS|length=96066bp|location=Sequence derived from alignment at sc0000167:174397..208997+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00013373 vs. Swiss-Prot (Human)
Match: LIPA2 (Liprin-alpha-2 OS=Homo sapiens GN=PPFIA2 PE=1 SV=2) HSP 1 Score: 401.364 bits (1030), Expect = 7.989e-117 Identity = 279/716 (38.97%), Postives = 420/716 (58.66%), Query Frame = 3
Query: 282 MICDIMPTLSEDGDMPGDGSMEDN-----NFEQLMVNMLDERDKLMETLRETQESLTNSKNNLKEAELERDTLLKGFDLVLQKCELDRDNLIKKLMSYEGKNADDSIIGRLKDQRVPIAEEFVSVSKELYQIREKMIERNEEIFELKAERSNTKLLLEHLESLVSRHERSLRMTVVKRQAQSSAGVSSEVEVLKALKSLFEHHKALDEKVRERLRMAVEKANSLEEDLSTANQEIEHLQQELEYAREKRRSLRSNSDVIDGPSSEDSEKVEELQ------------EKIRDLKYQLEKSQKESQDTRERFSSLEEQINSTTKKANYSF-------ENNQRVQKELQEALAQKGDLEERMMTLEKRYVRSQNDLSAAADEHEKYRAEILSLQTMMEQRSEKINALQEQCQFYEMKCSQTMKHAEELPKIQQELENRKAALNAAEERNFTAEEQLQNMHVQIEELSAELTRSKEREQMTEDHNNKLKNTVDKLLTESNDRLQQHLKEKMQSIDEKSHVAQE-------LEKSKLLVEDLRKQTSSLESELEKLK------------------------------NTQYRHQNTLNVSSPRSP------DSPRF-TQTEPTWPKTNQANLVHTNPNKHYIPPHAEFDGSDAXXXXXXXXXXXXVPPVINTENITSNDAQVLANVLQKQLDAINEELALLQVEHRTTEKLTEQIEKRVGS 2225
M+C++MPT++ED M GS +FEQLMVNMLDERD+L++TLRETQESL+ ++ L++ +RD+L + + L + D ++L L +G + EF +++KEL RE+++E+ EEI ELKAER+NT+LLLEHLE LVSRHERSLRMTVVKRQAQS +GVSSEVEVLKALKSLFEHHKALDEKVRERLR+++E+ ++LEE+L+ ANQEI L+++ + + K S +++ E +KV E + +I +L+ LEK E +ER ++L ++ ++A + E N + Q++++EA+AQK D+EER+ TLEKRY+ +Q + ++ D ++K E+ + + ++ Q EK LQE+ + E K QTM+ AE LP+++ EL R AAL AEER+ EE+++++ Q+EE + EL R+++RE+M E+HN +L +TVD+LLTESN+RLQ HLKE+M +++EK+ + QE LE+S E L ++ L SEL++LK ++Q ++ T + PR D P+ + + W +T Q ++ ++P E D + S + + P ++ DAQ LA +LQ+QLDAIN+E+ L+Q E +TE E+IE RV S
Sbjct: 1 MMCEVMPTINEDTPMSQRGSQSSGSDSDSHFEQLMVNMLDERDRLLDTLRETQESLSLAQQRLQDVIYDRDSLQRQLNSALPQ---DIESLTGGLAGSKGADPP----------------EFAALTKELNACREQLLEKEEEISELKAERNNTRLLLEHLECLVSRHERSLRMTVVKRQAQSPSGVSSEVEVLKALKSLFEHHKALDEKVRERLRVSLERVSALEEELAAANQEIVALREQNVHIQRKMASSEGSTESEHLEGMEPGQKVHEKRLSNGSIDSTDETSQIVELQELLEKQNYEMAQMKERLAALSSRVGEVEQEAETARKDLIKTEEMNTKYQRDIREAMAQKEDMEERITTLEKRYLSAQRESTSIHDMNDKLENELANKEAILRQMEEKNRQLQERLELAEQKLQQTMRKAETLPEVEAELAQRIAALTKAEERHGNIEERMRHLEGQLEEKNQELQRARQREKMNEEHNKRLSDTVDRLLTESNERLQLHLKERMAALEEKNVLIQESETFRKNLEESLHDKERLAEEIEKLRSELDQLKMRTGSLIEPTIPRTHLDTSAELRYSVGSLVDSQSDYRTTKVIRRPRRGRMGVRRDEPKVKSLGDHEWNRTQQIGVLSSHP----FESDTEMSDIDDDDRETIFSSMDLLSPSGHS------DAQTLAMMLQEQLDAINKEIRLIQEEKESTELRAEEIENRVAS 687 HSP 2 Score: 377.096 bits (967), Expect = 1.486e-108 Identity = 192/382 (50.26%), Postives = 249/382 (65.18%), Query Frame = 3
Query: 2622 SSLTSSMESLNRRGPNKNKGLKNSIGKIFSTKGKLKPRDMGSSRS-EDLDSTAE---------THRDAETRMKRK--LLEDVIASGAPFAAWNAPTILAWLELWVKLPEWYIQACRANVKSGSIMSALSDYEIQHEIGVNNPLHRLKLRLAIREMINVTSPISPPTAKT-------------------------------------SLVFGDMNHFWIASEWLASLGLPQYKYPFIENLVDARMLEHITKKDYTKYLKVVDSFHRTSLTCGTKCLEVLNYDRKYLEKRRKEAETEDKDVLVWSNARVIRWAHNIGLEDYADFLRQSGVHGALIALDENFDVELFAYYLQIPSTNEKKRGLLEREYNKLLVLCHEYKTSTQSD 3620
S SS +SL++ P K KG+K+SIG++F K K + +G R + ++ A+ T + + R+K+K LLE+ G PFA W+ PT++AWLELW+ +P WY+ ACRANVKSG+IMSALSD EIQ EIG++NPLHRLKLRLAI+EM+++TSP +PPT++T +L +GDMNH WI +EWL SLGLPQY+ F+E LVDARML+H+TKKD +LK+VDSFHRTSL G CL+ LNYDRK LE+RR+ ++ E KDVLVWSN RVIRW IGL +YA+ + +SGVHG+LIALDENFD A LQIP+ N + R +LEREYN LL L E + D
Sbjct: 812 GSANSSQDSLHK-APKK-KGIKSSIGRLFGKKEKAR---LGQLRGFMETEAAAQESLGLGKLGTQAEKDRRLKKKHELLEEARRKGLPFAQWDGPTVVAWLELWLGMPAWYVAACRANVKSGAIMSALSDTEIQREIGISNPLHRLKLRLAIQEMVSLTSPSAPPTSRTPSGNVWVTHEEMENLAAPAKTKESEEGSWAQCPVFLQTLAYGDMNHEWIGNEWLPSLGLPQYRSYFMECLVDARMLDHLTKKDLRVHLKMVDSFHRTSLQYGIMCLKRLNYDRKELERRREASQHEIKDVLVWSNDRVIRWIQAIGLREYANNILESGVHGSLIALDENFDYSSLALLLQIPTQNTQARQILEREYNNLLALGTERRLDESDD 1188 The following BLAST results are available for this feature:
BLAST of TCONS_00013373 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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