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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013362 ID=TCONS_00013362|Name=TCONS_00013362|organism=Clytia hemisphaerica|type=transcript|length=1901bp
TTTTCAAAGTGTATATGTGATATAAATTGTTCTTCCTTTTTAATGCCTAG
CAACTTTAATAAATTGTAATTTTCACAAGTCagtttttatgtttcattta
ttAATGGACTTTTAACTTTACAGAAGCTTCATGTACACATATTATAgtgt
ttataaaattttaaaatgaataAATATGTTCAGTTTTTGATTGTATCATT
TTTGTTGGTATTACTTTGTGCGATTTTTACAATAAACATCAAGATATGGA
ATTccttagaaaatttcaaacagttCAAATCAACTGAATTTTACACGGTT
AAAGGAAATCAAACCTACTTCAAAATAAACGAGAAACGTCACGAATCACG
TCAAATACTTTTAGCTGTCGGTGTTTTGAATCGTTTGTCGTTAAAAAACC
GTCGCGACGTTATACGAATGACGTGGTTTAAAGAATGCCAACGGAAAACA
AAATTGGTACGGTGTAATTTTTTCACCGATTCCTTTGACGGATTGAATCA
AACAGATGTTGATAAAATTCAAGAAGAAAATCGTCAATATAACGATATGC
TATTCATGCCAATAAAGGGTGGGCATAGATTTGCCGAACGTTTGGTTTGG
ATGTTACAATGGTATACCGAGAATTACGATTTCCAATACTTCTTGCGTGT
TGATGATGATTATTTCATTTGTATGGATCGTTTATTGTATGAACTTCCTT
ATCGACCGAAAAACGGATTATATTGGGGTTACACACATTGTACAGATAAC
GTTATTAGAGTAGATGAAGGCTGGATGTTATTATCACGTGATATCATTGA
CGAAGCTTTATCAAAGCTTGATACAACGTTACCGTGTCATCCATTTGGTG
ATCAAGCTGTGGCCCTTTGGATTAAAGAATCGAAGTTAGATATCAACTGG
TTTCCTGATAATAACAGAATTGTACATCAAGCAACAGCGTACAATGAGCA
CCAGTATATGTTCAATGGTTTTTGTAATGTTTACTTAGCGATGCATGGTT
CGTATCAATTACAAATGTTGAAATATTGGATTCTACACAGTGATTATAAA
GAACCTAAACGGAGATATTTCATTCCTCATATACCGGAATTTACCAGTTT
TTGCCAGAAGAATCGAACTTTTGATTTGAATGCATTTTGGCCGCATGTTC
GGTATATGCCCAAACGTTGTAAAGATAAACCAGAGTGGAGCATAAGTAAA
GCGAAATTTGTTGGTCGTGAAGAATATGGACAGGATATGATTTATTAGAA
ATACTTTTTAGGTTTTACATATTATTACAATGTTTTTCTAGAGTATGTCG
acgcttttgttttttttaccttttctcaGCACCCATTCGTGCTATGTTAG
AAATTTATAggaccgttggaaagatatttttaaggAGAAAAATctaaagg
ataaatttttttgaaaagttgaattCTTGGATGAAATGTTACAGCCCTTG
GAAGTAGGCCTAAAACTAGCCTACATGTTTTTTCTTTTATAAGCATAACG
TTTATAAGCAtacgcaggctcagtttttggcacctaaacaatggctctat
tgtttgagaacaatagaatgctaagcataatgcgagcctgatataggtgc
agacacttgcttataaaaaaaaaaacatgtagttaactaagcccgtattc
acaaggctaggacacacggcttatgcaatatagcgttttcggcgctttaa
gattttttatatttacggattttaaatTTGCcttagttattcagtcacaa
cttaaccatcacatttatccaagtgactgaatcaaactagcttagatttc
taggctagccTAAAACGGGCAAAAATGACCAACTTCACAGTGctgtaact
ttttttttatttaggaaAGACATGAAGAAATTGAACACAGATGAAATCAA
C Run BLAST on NCBI protein sequence of TCONS_00013362-protein >TCONS_00013362-protein ID=TCONS_00013362-protein|Name=TCONS_00013362-protein|organism=Clytia hemisphaerica|type=polypeptide|length=360bp
MNKYVQFLIVSFLLVLLCAIFTINIKIWNSLENFKQFKSTEFYTVKGNQT
YFKINEKRHESRQILLAVGVLNRLSLKNRRDVIRMTWFKECQRKTKLVRC
NFFTDSFDGLNQTDVDKIQEENRQYNDMLFMPIKGGHRFAERLVWMLQWY
TENYDFQYFLRVDDDYFICMDRLLYELPYRPKNGLYWGYTHCTDNVIRVD
EGWMLLSRDIIDEALSKLDTTLPCHPFGDQAVALWIKESKLDINWFPDNN
RIVHQATAYNEHQYMFNGFCNVYLAMHGSYQLQMLKYWILHSDYKEPKRR
YFIPHIPEFTSFCQKNRTFDLNAFWPHVRYMPKRCKDKPEWSISKAKFVG
REEYGQDMIY Run BLAST on NCBI transcript from alignment at sc0000167:98585..100835+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013362 ID=TCONS_00013362|Name=TCONS_00013362|organism=Clytia hemisphaerica|type=transcript|length=2251bp|location=Sequence derived from alignment at sc0000167:98585..100835+ (Clytia hemisphaerica)
TTTTCAAAGTGTATATGTGATATAAATTGTTCTTCCTTTTTAATGCCTAG
CAACTTTAATAAATTGTAATTTTCACAAGTCagtttttatgtttcattta
ttAATGGACTTTTAACTTTACAGAAGCTTCATGTACACATATTATAgtgt
ttataaaattttaaaatgaataAATATGTTCAGTTTTTGATTGTATCATT
TTTGTTGGTATTACTTTGTGCGATTTTTACAATAAACATCAAGATATGGA
ATTccttagaaaatttcaaacagttCAAATCAACTGAATTTTACACGGTT
AAAGGAAATCAAACCTACTTCAAAATAAACGAGAAACGTCACGAATCACG
TCAAATACTTTTAGCTGTCGGTGTTTTGAATCGTTTGTCGTTAAAAAACC
GTCGCGACGTTATACGAATGACGTGGTTTAAAGAATGCCAACGGAAAACA
AAATTGGTACGGTGTAATTTTTTCACCGATTCCTTTGACGGATTGAATCA
AACAGATGTTGATAAAATTCAAGAAGAAAATCGTCAATATAACGATATGC
TATTCATGCCAATAAAGGGTATAGTAATATACTAGTGTCGGTCTTTTTGT
ATGGTGCACTTTCAACGATAGTACACCGAAGCTGTAACAATACTATGATA
TCTGAAATTTTATGatgtttttacagaaaattatacagttgacgctctct
aattcaatcttcaaggggaattggattttcatcgaataagggggcctatc
gaatagtagaacgtcgaattagagagcgtcaactatatCCCTAATTTGAC
ATTTTGTGATGGTCCTAAGATTAGCGGTTTAATTGTCCTTGTCACAGAAG
GTCTCCACTTAGTAGTAAATCTTTCGATCATGAcatcattcttttgtttt
ctgttttttattaATTAGGTGGGCATAGATTTGCCGAACGTTTGGTTTGG
ATGTTACAATGGTATACCGAGAATTACGATTTCCAATACTTCTTGCGTGT
TGATGATGATTATTTCATTTGTATGGATCGTTTATTGTATGAACTTCCTT
ATCGACCGAAAAACGGATTATATTGGGGTTACACACATTGTACAGATAAC
GTTATTAGAGTAGATGAAGGCTGGATGTTATTATCACGTGATATCATTGA
CGAAGCTTTATCAAAGCTTGATACAACGTTACCGTGTCATCCATTTGGTG
ATCAAGCTGTGGCCCTTTGGATTAAAGAATCGAAGTTAGATATCAACTGG
TTTCCTGATAATAACAGAATTGTACATCAAGCAACAGCGTACAATGAGCA
CCAGTATATGTTCAATGGTTTTTGTAATGTTTACTTAGCGATGCATGGTT
CGTATCAATTACAAATGTTGAAATATTGGATTCTACACAGTGATTATAAA
GAACCTAAACGGAGATATTTCATTCCTCATATACCGGAATTTACCAGTTT
TTGCCAGAAGAATCGAACTTTTGATTTGAATGCATTTTGGCCGCATGTTC
GGTATATGCCCAAACGTTGTAAAGATAAACCAGAGTGGAGCATAAGTAAA
GCGAAATTTGTTGGTCGTGAAGAATATGGACAGGATATGATTTATTAGAA
ATACTTTTTAGGTTTTACATATTATTACAATGTTTTTCTAGAGTATGTCG
acgcttttgttttttttaccttttctcaGCACCCATTCGTGCTATGTTAG
AAATTTATAggaccgttggaaagatatttttaaggAGAAAAATctaaagg
ataaatttttttgaaaagttgaattCTTGGATGAAATGTTACAGCCCTTG
GAAGTAGGCCTAAAACTAGCCTACATGTTTTTTCTTTTATAAGCATAACG
TTTATAAGCAtacgcaggctcagtttttggcacctaaacaatggctctat
tgtttgagaacaatagaatgctaagcataatgcgagcctgatataggtgc
agacacttgcttataaaaaaaaaaacatgtagttaactaagcccgtattc
acaaggctaggacacacggcttatgcaatatagcgttttcggcgctttaa
gattttttatatttacggattttaaatTTGCcttagttattcagtcacaa
cttaaccatcacatttatccaagtgactgaatcaaactagcttagatttc
taggctagccTAAAACGGGCAAAAATGACCAACTTCACAGTGctgtaact
ttttttttatttaggaaAGACATGAAGAAATTGAACACAGATGAAATCAA
C Coding sequence (CDS) from alignment at sc0000167:98585..100835+ >TCONS_00013362 ID=TCONS_00013362|Name=TCONS_00013362|organism=Clytia hemisphaerica|type=CDS|length=2166bp|location=Sequence derived from alignment at sc0000167:98585..100835+ (Clytia hemisphaerica)
atgaataAATATGTTCAGTTTTTGATTGTATCATTTTTGTTGGTATTACT
TTGTGCGATTTTTACAATAAACATCAAGATATGGAATTccttagaaaatt
tcaaacagttCAAATCAACTGAATTTTACACGGTTAAAGGAAATCAAACC
TACTTCAAAATAAACGAGAAACGTCACGAATCACGTCAAATACTTTTAGC
TGTCGGTGTTTTGAATCGTTTGTCGTTAAAAAACCGTCGCGACGTTATAC
GAATGACGTGGTTTAAAGAATGCCAACGGAAAACAAAATTGGTACGGTGT
AATTTTTTCACCGATTCCTTTGACGGATTGAATCAAACAGATGTTGATAA
AATTCAAGAAGAAAATCGTCAATATAACGATATGCTATTCATGCCAATAA
AGGGTGGGCATAGATTTGCCGAACGTTTGGTTTGGATGTTACAATGGTAT
ACCGAGAATTACGATTTCCAATACTTCTTGCGTGTTGATGATGATTATTT
CATTTGTATGGATCGTTTATTGTATGAACTTCCTTATCGACCGAAAAACG
GATTATATTGGGGTTACACACATTGTACAGATAACGTTATTAGAGTAGAT
GAAGGCTGGATGTTATTATCACGTGATATCATTGACGAAGCTTTATCAAA
GCTTGATACAACGTTACCGTGTCATCCATTTGGTGATCAAGCTGTGGCCC
TTTGGATTAAAGAATCGAAGTTAGATATCAACTGGTTTCCTGATAATAAC
AGAATTGTACATCAAGCAACAGCGTACAATGAGCACCAGTATATGTTCAA
TGGTTTTTGTAATGTTTACTTAGCGATGCATGGTTCGTATCAATTACAAA
TGTTGAAATATTGGATTCTACACAGTGATTATAAAGAACCTAAACGGAGA
TATTTCATTCCTCATATACCGGAATTTACCAGTTTTTGCCAGAAGAATCG
AACTTTTGATTTGAATGCATTTTGGCCGCATGTTCGGTATATGCCCAAAC
GTTGTAAAGATAAACCAGAGTGGAGCATAAGTAAAGCGAAATTTGTTGGT
CGTGAAGAATATGGACAGGATATGATTTATTAGatgaataAATATGTTCA
GTTTTTGATTGTATCATTTTTGTTGGTATTACTTTGTGCGATTTTTACAA
TAAACATCAAGATATGGAATTccttagaaaatttcaaacagttCAAATCA
ACTGAATTTTACACGGTTAAAGGAAATCAAACCTACTTCAAAATAAACGA
GAAACGTCACGAATCACGTCAAATACTTTTAGCTGTCGGTGTTTTGAATC
GTTTGTCGTTAAAAAACCGTCGCGACGTTATACGAATGACGTGGTTTAAA
GAATGCCAACGGAAAACAAAATTGGTACGGTGTAATTTTTTCACCGATTC
CTTTGACGGATTGAATCAAACAGATGTTGATAAAATTCAAGAAGAAAATC
GTCAATATAACGATATGCTATTCATGCCAATAAAGGGTGGGCATAGATTT
GCCGAACGTTTGGTTTGGATGTTACAATGGTATACCGAGAATTACGATTT
CCAATACTTCTTGCGTGTTGATGATGATTATTTCATTTGTATGGATCGTT
TATTGTATGAACTTCCTTATCGACCGAAAAACGGATTATATTGGGGTTAC
ACACATTGTACAGATAACGTTATTAGAGTAGATGAAGGCTGGATGTTATT
ATCACGTGATATCATTGACGAAGCTTTATCAAAGCTTGATACAACGTTAC
CGTGTCATCCATTTGGTGATCAAGCTGTGGCCCTTTGGATTAAAGAATCG
AAGTTAGATATCAACTGGTTTCCTGATAATAACAGAATTGTACATCAAGC
AACAGCGTACAATGAGCACCAGTATATGTTCAATGGTTTTTGTAATGTTT
ACTTAGCGATGCATGGTTCGTATCAATTACAAATGTTGAAATATTGGATT
CTACACAGTGATTATAAAGAACCTAAACGGAGATATTTCATTCCTCATAT
ACCGGAATTTACCAGTTTTTGCCAGAAGAATCGAACTTTTGATTTGAATG
CATTTTGGCCGCATGTTCGGTATATGCCCAAACGTTGTAAAGATAAACCA
GAGTGGAGCATAAGTAAAGCGAAATTTGTTGGTCGTGAAGAATATGGACA
GGATATGATTTATTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013362-exon-sc0000167-1491911889:98585..99152 | TCONS_00013362-exon-sc0000167-1491911889:98585..99152 | Clytia hemisphaerica | exon |
| TCONS_00013362-exon-sc0000167-1510915933:98585..99152 | TCONS_00013362-exon-sc0000167-1510915933:98585..99152 | Clytia hemisphaerica | exon |
| TCONS_00013362-exon-sc0000167-1575043694:98585..99152 | TCONS_00013362-exon-sc0000167-1575043694:98585..99152 | Clytia hemisphaerica | exon |
| TCONS_00013362-exon-sc0000167-1491911889:99503..100835 | TCONS_00013362-exon-sc0000167-1491911889:99503..100835 | Clytia hemisphaerica | exon |
| TCONS_00013362-exon-sc0000167-1510915933:99503..100835 | TCONS_00013362-exon-sc0000167-1510915933:99503..100835 | Clytia hemisphaerica | exon |
| TCONS_00013362-exon-sc0000167-1575043694:99503..100835 | TCONS_00013362-exon-sc0000167-1575043694:99503..100835 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000167 | supercontig | sc0000167:98585..100835 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002659 | Glyco_trans_31 |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008378 | galactosyltransferase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006486 | protein glycosylation |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006486 |
protein glycosylation |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0008378 |
galactosyltransferase activity |
Blast
The following BLAST results are available for this feature:
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