TCONS_00013359 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013359
Unique NameTCONS_00013359
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length756

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013359 ID=TCONS_00013359|Name=TCONS_00013359|organism=Clytia hemisphaerica|type=transcript|length=756bp
CTTTCATATTTATGTCCACGATGTTCTAAAATGGTACAATCCTTACAAAC
CAGTTCTTTACAAACTTCACAAAAATAGGTAAAAACCTCTGGTGAGTGTG
TTGGGCAATAGACTGGCCTATGAACCATGCTTTGGTCGTATCTCAAAGTA
TCCAACGGGATGATTTTGTGATCTTTCGTTACTCTGATTCTCCTGTGAGC
TGTCACACAACACAAACATAGAAATTCAGAACATTCAACACATCTGGAGA
TAGCATCTGTTTTATCAGAGCATGCTGTACATTGGATTGctttttcattt
tgactttgtatCATGAGATAGTCTATAGCATTATTTGCAAAGAAATTGTA
TGGTAACATTGAGGTTAGATTCTTCTCTGGAAAGCTTGTAAATTCACCAC
AAATTAAGCATTTAATGATGGCCTGTGTTCCCTCATAGCCTGGTATCTTA
ACATAGGTGATGTTGTTTGATAAGCACTCTTCACAGAAGGTATGCAGACA
GGATAAGATGCGTGGtttatagaaatatttttggcaGAGCTCGCATGTGA
GATTGATATCACGTAAACAATGTTGAGGACTTTGTTGTCTTGACGTTGGC
GTGTTCTGGTTGTTGAGGTTTGGTGGTTGGAAGTTTGGTGGATCACAAAT
GATATCGACCAATGAGCGATTGAGTTGGTGTGATGAAGTATCTAATGTTA
TTGAAGTTGATGACATTGTTGGTGTTGTTGCTTCATCTTAGTAAACCATG
cctgtt
Run BLAST on NCBI

transcript from alignment at sc0000167:86254..87083+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013359 ID=TCONS_00013359|Name=TCONS_00013359|organism=Clytia hemisphaerica|type=transcript|length=830bp|location=Sequence derived from alignment at sc0000167:86254..87083+ (Clytia hemisphaerica)
CTTTCATATTTATGTCCACGATGTTCTAAAATGGTACAATCCTTACAAAC
CAGTTCTTTACAAACTTCACAAAAATAGGTAAAAACCTCTGGTGAGTGTG
TTGGGCAATAGACTGGCCTATGAACCATGCTTTGGTCGTATCTCAAAGTA
TCCAACGGGATGATTTTGTGATCTTTCGTTACTCTGATTCTCCTGTGAGC
TGTCACACAACACAAACATAGAAATTCAGAACATTCAACACATCTGGAGA
TAGCATCTGTTTTATCAGAGCATGCTGTACATTGGATTGctttttcattt
tgactttgtatCATGAGATAGTCTATAGCATTATTTGCAAAGAAATTGTA
TGGTAACATTGAGGTTAGATTCTTCTCTGGAAAGCTTGTAAATTCACCAC
AAATTAAGCATTTAATGATGGCCTGTGTTCCCTCATAGCCTGGTATCTTA
ACATAGGTGATGTTGTTTGATAAGCACTCTTCACAGAAGGTATGCAGACA
GGATAAGATGCGTGGTTTGTAGAAATATTTTTGGCAGAGCTCACATGTAN
CTCTTCACAAAAGGTATGCAGACAGGATAAGATGCGTGGtttatagaaat
atttttggcaGAGCTCGCATGTGAGATTGATATCACGTAAACAATGTTGA
GGACTTTGTTGTCTTGACGTTGGCGTGTTCTGGTTGTTGAGGTTTGGTGG
TTGGAAGTTTGGTGGATCACAAATGATATCGACCAATGAGCGATTGAGTT
GGTGTGATGAAGTATCTAATGTTATTGAAGTTGATGACATTGTTGGTGTT
GTTGCTTCATCTTAGTAAACCATGcctgtt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007469XLOC_007469Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013359-exon-sc0000167-1491911889:86254..86742TCONS_00013359-exon-sc0000167-1491911889:86254..86742Clytia hemisphaericaexon
TCONS_00013359-exon-sc0000167-1510915933:86254..86742TCONS_00013359-exon-sc0000167-1510915933:86254..86742Clytia hemisphaericaexon
TCONS_00013359-exon-sc0000167-1575043694:86254..86742TCONS_00013359-exon-sc0000167-1575043694:86254..86742Clytia hemisphaericaexon
TCONS_00013359-exon-sc0000167-1491911889:86817..87083TCONS_00013359-exon-sc0000167-1491911889:86817..87083Clytia hemisphaericaexon
TCONS_00013359-exon-sc0000167-1510915933:86817..87083TCONS_00013359-exon-sc0000167-1510915933:86817..87083Clytia hemisphaericaexon
TCONS_00013359-exon-sc0000167-1575043694:86817..87083TCONS_00013359-exon-sc0000167-1575043694:86817..87083Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000167supercontigsc0000167:86254..87083 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.031464	0.0546135	0.0176892	0.284768	0.310306	2.99925	0	0.947861	0.000219663	1.13535	0	2.11328	0.00221047	1.25819	1.35708	0	1.03267	0	0.47162	2.84218	0.356259	0	1.9143	0	0	0.96839	0.587092	0	0.0914027
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR000315Znf_B-box
IPR027370Znf-RING_LisH
IPR013083Znf_RING/FYVE/PHD
IPR017907Znf_RING_CS
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005622 intracellular
molecular_function GO:0008270 zinc ion binding
Blast
[Close]
BLAST of TCONS_00013359 vs. Swiss-Prot (Human)
Match: TRI33 (E3 ubiquitin-protein ligase TRIM33 OS=Homo sapiens GN=TRIM33 PE=1 SV=3)

HSP 1 Score: 113.235 bits (282), Expect = 1.025e-27
Identity = 66/195 (33.85%), Postives = 101/195 (51.79%), Query Frame = -2 
Query:    3 TCELCQKYFY-----KPRILSCLHTFCEECLSNNITYVKIPGYEGTQA------IIKCLICGEFTSFPEKNLTSMLPYNFFANNAIDYLMIQSQNEKAIQ-CTACSDKTDAISRCVECSEFLCLCCVTAHRRIRVTKDHKIIPLDTLRYD-QSMVHRPVYCPTHSPEVFTYFCEVCKELVCKDCTILEHRGHKYE 548
            TC +CQ+        +P++L CLH+FC  CL      + +P   G+        +I+C +C +     +      L  N+F  +  +     S +EK+ Q CT+C D   A+  CVEC E+LC  C+ AH+R++ TKDH I   + +     +   RPV+CP H  E    FCE C  L C+DC +LEH+ H+Y+
Sbjct:  124 TCAVCQQSLQSRREAEPKLLPCLHSFCLRCLPEPERQLSVPIPGGSNGDIQQVGVIRCPVCRQECRQID------LVDNYFVKDTSE--APSSSDEKSEQVCTSCEDNASAVGFCVECGEWLCKTCIEAHQRVKFTKDHLIRKKEDVSESVGASGQRPVFCPVHKQEQLKLFCETCDRLTCRDCQLLEHKEHRYQ 310
The following BLAST results are available for this feature:
BLAST of TCONS_00013359 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRI331.025e-2733.85E3 ubiquitin-protein ligase TRIM33 OS=Homo sapiens... [more]
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