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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013352 ID=TCONS_00013352|Name=TCONS_00013352|organism=Clytia hemisphaerica|type=transcript|length=974bp
TGAATTTGAGTGTTACGaaagaaaacacaaaaacaacaaaacaatgggtt
gaaaaaagtataaatagAGATACtcgttgtaaagatattcatcACAAAGT
GAAGAACAGAACATTACAACAGTTTGCAAACGAACAAACAGACGGACAAA
CAACAAGAAGACAAGATGAAGGTTTACCTGGCACTGGTTCTTCTTTTTAT
CGCACCGTGCTTGATTCGATGTAGTGGAGATAAAACGACGTTGACTGAAT
TACACCCCCCTCACAGTAATTGTGCGAGTGACCTATGCGAAGGAAAATCT
GCGGGTGAATATTTTGAGCATCCAATGTTATACTACGTTTTGGTGCAATG
TGCTGGTAACTGTGTTGTCGATAAATGCTATCAATGTGAAAGCGAAGATT
TTGGTAAATACAAACCAATCAAAAATGATGGTGAAGTGAGCTGCGTAAAA
GCTCCAGAACACGACGAATAAAGCAGAGAAAACCAACTAGGATCGTCCAA
ACTggtcattttctttcaaaatcacaaaatggcAACGATGTACAGCcact
aatttttttaaatctattttactATTATAACCATTTTTTAAACCTATAAT
TTAAAGGATTGGTGTAGCTCCAAGAATAAATTTtgtatttgttatttttt
gatactcacttcttttgtttaaaatttacgCCTGTATCTCGATGACCAAA
CACAAGATTTTTAAACAGTTGAATTCAAGGGTCTTTTCTATCTCAGAATT
GTCTATTTTTAGCAATGTTTATACAATGGGAAAGGTTTTTCCGTATCTAA
GGAACCTAAATGAATTCTTTTTACCCTTTTGACCTtagtgaattttttat
atttaccatgtacaaaatatagatttctgcctgatgtaaccaacaaaact
atggcatgttatgcATTTTTTATAGGCTAATTATTCTTGAATctggaaat
taaaaaattgcaatgaaaaaaatc Run BLAST on NCBI protein sequence of TCONS_00013352-protein >TCONS_00013352-protein ID=TCONS_00013352-protein|Name=TCONS_00013352-protein|organism=Clytia hemisphaerica|type=polypeptide|length=101bp
MKVYLALVLLFIAPCLIRCSGDKTTLTELHPPHSNCASDLCEGKSAGEYF
EHPMLYYVLVQCAGNCVVDKCYQCESEDFGKYKPIKNDGEVSCVKAPEHD
E Run BLAST on NCBI transcript from alignment at sc0000167:5505..8076+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013352 ID=TCONS_00013352|Name=TCONS_00013352|organism=Clytia hemisphaerica|type=transcript|length=2572bp|location=Sequence derived from alignment at sc0000167:5505..8076+ (Clytia hemisphaerica)
TGAATTTGAGTGTTACGaaagaaaacacaaaaacaacaaaacaatgggtt
gaaaaaagtataaatagAGATACtcgttgtaaagatattcatcACAAAGT
GAAGAACAGAACATTACAACAGTTTGCAAACGAACAAACAGACGGACAAA
CAACAAGAAGACAAGATGAAGGTTTACCTGGCACTGGTTCTTCTTTTTAT
CGGTAAGAAAACATCAACATATTATTTCGACATCTATGACACAGcccatt
ctcacagacccactgggaccccttcctactggtcaaaatttcgtccctgg
atgaaaattttactccaatttttgtcccccctaaaataaacaaataagcc
aatcctcactgcaaactTTTATGCTTTTATTCCCATCTAAATTGAATTTT
CTGATgcgaaaacaaaataattaaaatccccagccataaaaaatatggga
aaatcaatcccatcgagtttcagtccgttatttttatcctatTGGGTGTG
TGAGAAAGGAGGTGCTATGACATTGGTATAATTTTCCATTAACAATTTCA
TACTTCTACACAAGATGGAAGTGATTGGTGTTGGAAACTAAAATCGCTAA
ATTGTCTAAAACTGTGAATGGAAAAATTCGTTAGTGTCTCGTCAAAACCC
TAAGTTTTTTCTATCTGTTCTAGCCCTGGCTTGAACTAATTTCAATATCt
attttttaaaatgaaataacCTCCGTATGTAAGAGTTCATGATTCTTGAA
TAATTCATTGtatcaattttatcaatttcAGCACCGTGCTTGATTCGATG
TAGTGGAGATAAAACGACGTTGACTGAATTACACCCCCCTCACAGTAATT
GTGCGAGTGACCTATGCGAAGGAAAATCTGCGGGTGAATATTTTGAGCAT
CCAATGTTATACTACGTTTTGGTGCAATGTGCTGGTAACTGTGTTGTCGA
TAAATGCTATCAATGTGAAAGCGAAGATTTTGGTAAATACAAACCAATCA
AAAATGATGGTGAAGTGAGCTGCGTAAAAGGTAAGCGGTGATAATTCCAT
TGAAAGATTTATCTTAAAATTGATGATACCAAATATGTACTTTATGTTTT
TTCTGCTTAACATTAAACTTTATAAATTAATCAGTTCTGAAATGTCGACA
TGGCTTTTAATACTACAAAAGCAATTTCTTTGACCTGGTACTTGAATGTT
TAAGATTTGAATAACATTTCTGAGAATTGTCTAAAAGTTACCATTTATAA
ACTGTAAGTTGCACCGTAGTGTAAAAGTAGTTCAGCGAATTTATGTGTTT
GCATTTTTGAGGATGAGAGAGTGggtgaagcgatttggaatgaTAACCAG
CAGTTTTAacctgcaaaatcgaggacggtaaaagtgctgatttaccgtcg
ttctCAGGAATAGCCTGTGGTTCTGaaccgcaaaatcgaggacggtaaaa
atgctgatttaccgtcgttNGGAATAGCCTGTGGTTCTGaaccgcaaaat
cgaggacggtaaaagtgctgatttaccgtcgttctCAGTTGGTCAATCTA
GTCAATTTAGAACCTTATCGTCTACAGTAtttcgcagaaaaacacacatg
cATAAATTCGATTATCCGACTACGATGTGCAAGGTTATGTGTTCAATCAC
TGGTCAAGCCATAATAAATACTGGGTTCGAAGAAGTACTTGACGTCCCTT
TTCTTAATGCTCAAAAGATAAAACGACTTTGCAAGGGCAAGTTAAGAAAT
CCAAAGAGAAAGGGTGGTACCCTACCTTTGGATACATAGCGGTGGGGAGG
GAGGGGGgttagggttgcgagctgacggggtaggggtgccacccgacttt
caaactttggacccttaatttcgatctttctgggggtaaaaagtagAAAT
GTTCCTTTTTTCCGACCctcagtgggactgaaattgtgggactttggaag
tccaaaaaaggtactcATAAGGGCAGCACATAACGTCCCTGGGGACATGA
CTCTCTATAAGTAAACTTTGAAACCAGATTTTCTTTCTTACACGTGTAGC
TCCAGAACACGACGAATAAAGCAGAGAAAACCAACTAGGATCGTCCAAAC
TggtcattttctttcaaaatcacaaaatggcAACGATGTACAGCcactaa
tttttttaaatctattttactATTATAACCATTTTTTAAACCTATAATTT
AAAGGATTGGTGTAGCTCCAAGAATAAATTTtgtatttgttattttttga
tactcacttcttttgtttaaaatttacgCCTGTATCTCGATGACCAAACA
CAAGATTTTTAAACAGTTGAATTCAAGGGTCTTTTCTATCTCAGAATTGT
CTATTTTTAGCAATGTTTATACAATGGGAAAGGTTTTTCCGTATCTAAGG
AACCTAAATGAATTCTTTTTACCCTTTTGACCTtagtgaattttttatat
ttaccatgtacaaaatatagatttctgcctgatgtaaccaacaaaactat
ggcatgttatgcATTTTTTATAGGCTAATTATTCTTGAATctggaaatta
aaaaattgcaatgaaaaaaatc Coding sequence (CDS) from alignment at sc0000167:5505..8076+ >TCONS_00013352 ID=TCONS_00013352|Name=TCONS_00013352|organism=Clytia hemisphaerica|type=CDS|length=918bp|location=Sequence derived from alignment at sc0000167:5505..8076+ (Clytia hemisphaerica)
ATGAAGGTTTACCTGGCACTGGTTCTTCTTTTTATCGCACCGTGCTTGAT
TCGATGTAGTGGAGATAAAACGACGTTGACTGAATTACACCCCCCTCACA
GTAATTGTGCGAGTGACCTATGCGAAGGAAAATCTGCGGGTGAATATTTT
GAGCATCCAATGTTATACTACGTTTTGGTGCAATGTGCTGGTAACTGTGT
TGTCGATAAATGCTATCAATGTGAAAGCGAAGATTTTGGTAAATACAAAC
CAATCAAAAATGATGGTGAAGTGAGCTGCGTAAAAGCTCCAGAACACGAC
GAATAAATGAAGGTTTACCTGGCACTGGTTCTTCTTTTTATCGCACCGTG
CTTGATTCGATGTAGTGGAGATAAAACGACGTTGACTGAATTACACCCCC
CTCACAGTAATTGTGCGAGTGACCTATGCGAAGGAAAATCTGCGGGTGAA
TATTTTGAGCATCCAATGTTATACTACGTTTTGGTGCAATGTGCTGGTAA
CTGTGTTGTCGATAAATGCTATCAATGTGAAAGCGAAGATTTTGGTAAAT
ACAAACCAATCAAAAATGATGGTGAAGTGAGCTGCGTAAAAGCTCCAGAA
CACGACGAATAAATGAAGGTTTACCTGGCACTGGTTCTTCTTTTTATCGC
ACCGTGCTTGATTCGATGTAGTGGAGATAAAACGACGTTGACTGAATTAC
ACCCCCCTCACAGTAATTGTGCGAGTGACCTATGCGAAGGAAAATCTGCG
GGTGAATATTTTGAGCATCCAATGTTATACTACGTTTTGGTGCAATGTGC
TGGTAACTGTGTTGTCGATAAATGCTATCAATGTGAAAGCGAAGATTTTG
GTAAATACAAACCAATCAAAAATGATGGTGAAGTGAGCTGCGTAAAAGCT
CCAGAACACGACGAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013352-exon-sc0000167-1491911889:5505..5706 | TCONS_00013352-exon-sc0000167-1491911889:5505..5706 | Clytia hemisphaerica | exon |
| TCONS_00013352-exon-sc0000167-1510915933:5505..5706 | TCONS_00013352-exon-sc0000167-1510915933:5505..5706 | Clytia hemisphaerica | exon |
| TCONS_00013352-exon-sc0000167-1575043694:5505..5706 | TCONS_00013352-exon-sc0000167-1575043694:5505..5706 | Clytia hemisphaerica | exon |
| TCONS_00013352-exon-sc0000167-1491911889:6286..6534 | TCONS_00013352-exon-sc0000167-1491911889:6286..6534 | Clytia hemisphaerica | exon |
| TCONS_00013352-exon-sc0000167-1510915933:6286..6534 | TCONS_00013352-exon-sc0000167-1510915933:6286..6534 | Clytia hemisphaerica | exon |
| TCONS_00013352-exon-sc0000167-1575043694:6286..6534 | TCONS_00013352-exon-sc0000167-1575043694:6286..6534 | Clytia hemisphaerica | exon |
| TCONS_00013352-exon-sc0000167-1491911889:7554..8076 | TCONS_00013352-exon-sc0000167-1491911889:7554..8076 | Clytia hemisphaerica | exon |
| TCONS_00013352-exon-sc0000167-1510915933:7554..8076 | TCONS_00013352-exon-sc0000167-1510915933:7554..8076 | Clytia hemisphaerica | exon |
| TCONS_00013352-exon-sc0000167-1575043694:7554..8076 | TCONS_00013352-exon-sc0000167-1575043694:7554..8076 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000167 | supercontig | sc0000167:5505..8076 + |
Blast
The following BLAST results are available for this feature:
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