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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013319 ID=TCONS_00013319|Name=TCONS_00013319|organism=Clytia hemisphaerica|type=transcript|length=2329bpRun BLAST on NCBI protein sequence of TCONS_00013319-protein >TCONS_00013319-protein ID=TCONS_00013319-protein|Name=TCONS_00013319-protein|organism=Clytia hemisphaerica|type=polypeptide|length=369bp MLVPVFSMKLSHKIHARMVSIGKYDGKHPCLTAATTASKVFIHNPHKRLNRun BLAST on NCBI transcript from alignment at sc0000164:455560..467692- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00013319 ID=TCONS_00013319|Name=TCONS_00013319|organism=Clytia hemisphaerica|type=transcript|length=12133bp|location=Sequence derived from alignment at sc0000164:455560..467692- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000164:455560..467692- >TCONS_00013319 ID=TCONS_00013319|Name=TCONS_00013319|organism=Clytia hemisphaerica|type=CDS|length=8880bp|location=Sequence derived from alignment at sc0000164:455560..467692- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00013319 vs. Swiss-Prot (Human)
Match: BBS2 (Bardet-Biedl syndrome 2 protein OS=Homo sapiens GN=BBS2 PE=1 SV=1) HSP 1 Score: 501.516 bits (1290), Expect = 3.950e-166 Identity = 234/359 (65.18%), Postives = 297/359 (82.73%), Query Frame = 2
Query: 71 MLVPVFSMKLSHKIHARMVSIGKYDGKHPCLTAATTASKVFIHNPHKR-LNLTGGRMEVAQSSSDINLLNINQQVSAVCCGSLD-DSERDLLFIGTPTNLLAYDVENNSDLFYQEMADGVNSLLVGTIGNNSTPLVLAGGNCSIQGFNHEGNDEFWTVTGDNVSSMGLVDFNSDGFLELLVGSEDFDIRVFKDDEIIAEMTETEAVTSLKCLYGSRFGYALANGTVGVYDRSARYWRIKSKNQAIAIHSFDLDDDGVPELVTGWSNGKVDARSDRTGEVVFKENLSSAVAGVLDADYRMDGKQQLVVCSVEGEVRGFVPAVAENRQPVVDLTAEQEKVRELAQRKQNLLLELNNYXKSG 1141
ML+PVF++KL HKI RMV+IG+YDG HPCL AAT KVFIHNPH R +++ R+ + SD++LLNINQ VS + G L+ + D L +GT TNLLAYDV NNSDLFY+E+ADG N++++GT+G+ S+PL + GGNC++QGFNHEG+D FWTVTGDNV+S+ L DF+ DG ELLVGSEDFDIRVFK+DEI+AEMTETE VTSL +YGSRFGYAL+NGTVGVYD+++RYWRIKSKN A++IH+FDL+ DGV EL+TGWSNGKVDARSDRTGEV+FK+N SSA+AGV++ DYRMDG QL+ CSV+GE+RG++P AE R ++D +AEQ+ +REL+Q+KQNLLLEL NY ++
Sbjct: 1 MLLPVFTLKLRHKISPRMVAIGRYDGTHPCLAAATQTGKVFIHNPHTRNQHVSASRVFQSPLESDVSLLNINQAVSCLTAGVLNPELGYDALLVGTQTNLLAYDVYNNSDLFYREVADGANAIVLGTLGDISSPLAIIGGNCALQGFNHEGSDLFWTVTGDNVNSLALCDFDGDGKKELLVGSEDFDIRVFKEDEIVAEMTETEIVTSLCPMYGSRFGYALSNGTVGVYDKTSRYWRIKSKNHAMSIHAFDLNSDGVNELITGWSNGKVDARSDRTGEVIFKDNFSSAIAGVVEGDYRMDGHIQLICCSVDGEIRGYLPGTAEMRGNLMDTSAEQDLIRELSQKKQNLLLELRNYEENA 359 HSP 2 Score: 391.349 bits (1004), Expect = 8.856e-124 Identity = 205/382 (53.66%), Postives = 273/382 (71.47%), Query Frame = 1
Query: 1135 VRELAQRKQNLLLELNNYQGNNRVAQDIASGESSTHIQGSIPANTQLQTSLQVVSGDGSAPAFVELTVQTINDTIVKSVIIFAEGIFDGESHVTHPQSHELSNCVXXXXXXXXXXXXXLHIKALVGHKNSQQFHVFELTRQLPRFSLYQLCP-EGYAQPRSYVQFDVNERVNRVVLWAQQNFLLSNEIGAKNGELDLKFLSARTQLPLQITMTTGGTVVIRSEDMDLVGDVVQNLASFLALEELITLAEFPEHMEELKAILIKVDELHSVCGRLTAEMADHSNLIRSLVVRAEDSRLMADMSNMKRSYIELFDLNRDLISGYKIRSTNHEELLKCLKIVNQTIVRAGNLRVGKAKTSVISNCRNAIKTNDVDALLKIIKHGT 2277
+REL+Q+KQNLLLEL NY+ N + E+ H +G IPANT+L T+L V G+ + A EL + T NDTI+++V+IFAEGIF GESHV HP H LS+ + IPI PP+D+P+DLH+KA VG+++S QFHVFE TRQLPRFS+Y L + ++P SYV F + ER RVV+W QNFLL + +N + F S R L I + G + I ++D+DL GD++Q++ASF A+E+L A+FP + EEL+ +L+KVDE HSV +L+A+MADHSNLIRSL+V AED+RLM DM MK Y+EL+DLNRDL++GYKIR NH ELL LK VNQ I RAG LRVGK K VI+ CR+AI++N+++ L KI++ GT
Sbjct: 338 IRELSQKKQNLLLELRNYEENAKAELASPLNEADGH-RGIIPANTRLHTTLSVSLGNETQTAHTELRISTSNDTIIRAVLIFAEGIFTGESHVVHPSIHNLSSSICIPIVPPKDVPVDLHLKAFVGYRSSTQFHVFESTRQLPRFSMYALTSLDPASEPISYVNFTIAERAQRVVVWLGQNFLLPEDTHIQNAPFQVCFTSLRNGGHLHIKIKLSGEITINTDDIDLAGDIIQSMASFFAIEDLQVEADFPVYFEELRKVLVKVDEYHSVHQKLSADMADHSNLIRSLLVGAEDARLMRDMKTMKSRYMELYDLNRDLLNGYKIRCNNHTELLGNLKAVNQAIQRAGRLRVGKPKNQVITACRDAIRSNNINTLFKIMRVGT 718 The following BLAST results are available for this feature:
BLAST of TCONS_00013319 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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