TCONS_00013319-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00013319-protein
Unique NameTCONS_00013319-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length369

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00013319-protein ID=TCONS_00013319-protein|Name=TCONS_00013319-protein|organism=Clytia hemisphaerica|type=polypeptide|length=369bp
MLVPVFSMKLSHKIHARMVSIGKYDGKHPCLTAATTASKVFIHNPHKRLN
LTGGRMEVAQSSSDINLLNINQQVSAVCCGSLDDSERDLLFIGTPTNLLA
YDVENNSDLFYQEMADGVNSLLVGTIGNNSTPLVLAGGNCSIQGFNHEGN
DEFWTVTGDNVSSMGLVDFNSDGFLELLVGSEDFDIRVFKDDEIIAEMTE
TEAVTSLKCLYGSRFGYALANGTVGVYDRSARYWRIKSKNQAIAIHSFDL
DDDGVPELVTGWSNGKVDARSDRTGEVVFKENLSSAVAGVLDADYRMDGK
QQLVVCSVEGEVRGFVPAVAENRQPVVDLTAEQEKVRELAQRKQNLLLEL
NNYXKSGNWHNGNKTFYWS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_007444XLOC_007444Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00013319TCONS_00013319Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR029333BBS2_C
IPR029430BBS2_N
IPR029429BBS2_Mid
IPR015943WD40/YVTN_repeat-like_dom
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 329..353
NoneNo IPR availableCOILSCoilCoilcoord: 355..356
IPR029333Ciliary BBSome complex subunit 2, C-terminal domainPFAMPF14782BBS2_Ccoord: 274..358
e-value: 4.2E-29
score: 101.5
IPR029430Ciliary BBSome complex subunit 2, N-terminalPFAMPF14781BBS2_Ncoord: 21..124
e-value: 4.5E-39
score: 132.5
IPR029429Ciliary BBSome complex subunit 2, middle regionPFAMPF14783BBS2_Midcoord: 163..270
e-value: 1.4E-41
score: 140.8
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 6..327
e-value: 1.3E-13
score: 50.0
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 57..314

Blast
[Close]
BLAST of TCONS_00013319-protein vs. Swiss-Prot (Human)
Match: BBS2 (Bardet-Biedl syndrome 2 protein OS=Homo sapiens GN=BBS2 PE=1 SV=1)

HSP 1 Score: 500.36 bits (1287), Expect = 1.424e-173
Identity = 234/359 (65.18%), Postives = 297/359 (82.73%), Query Frame = 0 
Query:    1 MLVPVFSMKLSHKIHARMVSIGKYDGKHPCLTAATTASKVFIHNPHKR-LNLTGGRMEVAQSSSDINLLNINQQVSAVCCGSLD-DSERDLLFIGTPTNLLAYDVENNSDLFYQEMADGVNSLLVGTIGNNSTPLVLAGGNCSIQGFNHEGNDEFWTVTGDNVSSMGLVDFNSDGFLELLVGSEDFDIRVFKDDEIIAEMTETEAVTSLKCLYGSRFGYALANGTVGVYDRSARYWRIKSKNQAIAIHSFDLDDDGVPELVTGWSNGKVDARSDRTGEVVFKENLSSAVAGVLDADYRMDGKQQLVVCSVEGEVRGFVPAVAENRQPVVDLTAEQEKVRELAQRKQNLLLELNNYXKSG 357
            ML+PVF++KL HKI  RMV+IG+YDG HPCL AAT   KVFIHNPH R  +++  R+  +   SD++LLNINQ VS +  G L+ +   D L +GT TNLLAYDV NNSDLFY+E+ADG N++++GT+G+ S+PL + GGNC++QGFNHEG+D FWTVTGDNV+S+ L DF+ DG  ELLVGSEDFDIRVFK+DEI+AEMTETE VTSL  +YGSRFGYAL+NGTVGVYD+++RYWRIKSKN A++IH+FDL+ DGV EL+TGWSNGKVDARSDRTGEV+FK+N SSA+AGV++ DYRMDG  QL+ CSV+GE+RG++P  AE R  ++D +AEQ+ +REL+Q+KQNLLLEL NY ++ 
Sbjct:    1 MLLPVFTLKLRHKISPRMVAIGRYDGTHPCLAAATQTGKVFIHNPHTRNQHVSASRVFQSPLESDVSLLNINQAVSCLTAGVLNPELGYDALLVGTQTNLLAYDVYNNSDLFYREVADGANAIVLGTLGDISSPLAIIGGNCALQGFNHEGSDLFWTVTGDNVNSLALCDFDGDGKKELLVGSEDFDIRVFKEDEIVAEMTETEIVTSLCPMYGSRFGYALSNGTVGVYDKTSRYWRIKSKNHAMSIHAFDLNSDGVNELITGWSNGKVDARSDRTGEVIFKDNFSSAIAGVVEGDYRMDGHIQLICCSVDGEIRGYLPGTAEMRGNLMDTSAEQDLIRELSQKKQNLLLELRNYEENA 359
The following BLAST results are available for this feature:
BLAST of TCONS_00013319-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
BBS21.424e-17365.18Bardet-Biedl syndrome 2 protein OS=Homo sapiens GN... [more]
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