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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013308 ID=TCONS_00013308|Name=TCONS_00013308|organism=Clytia hemisphaerica|type=transcript|length=1758bpRun BLAST on NCBI protein sequence of TCONS_00013308-protein >TCONS_00013308-protein ID=TCONS_00013308-protein|Name=TCONS_00013308-protein|organism=Clytia hemisphaerica|type=polypeptide|length=360bp KRTQKNMQGKGINILNTLKMRLLLARTGWLSSKIKYTSPKALACHGHFISRun BLAST on NCBI transcript from alignment at sc0000164:340348..360571- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00013308 ID=TCONS_00013308|Name=TCONS_00013308|organism=Clytia hemisphaerica|type=transcript|length=20224bp|location=Sequence derived from alignment at sc0000164:340348..360571- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000164:340348..360571- >TCONS_00013308 ID=TCONS_00013308|Name=TCONS_00013308|organism=Clytia hemisphaerica|type=CDS|length=9747bp|location=Sequence derived from alignment at sc0000164:340348..360571- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00013308 vs. Swiss-Prot (Human)
Match: COX18 (Mitochondrial inner membrane protein COX18 OS=Homo sapiens GN=COX18 PE=2 SV=1) HSP 1 Score: 146.747 bits (369), Expect = 5.367e-39 Identity = 87/264 (32.95%), Postives = 144/264 (54.55%), Query Frame = 2
Query: 236 TQTILENIHLYSGFPWWATIACTTILLRTAITLPLAIKQNKMTAKMELLKPLLKEVTDAVRYNIITRGQRDGKGKTQIQAELFKELRSYTKDFYQRNGINTWKLFMLPWIQLPLWITISFALRNISGWIPNTGVESEAIDSTLYAPAAGVEIEGLLWFSNLSVPDPYYVLPCVXXXXXXXXXXXXXFRQQTPSTMSKVLTNTFRGLTCLVFLVSTQVPSAMSLYWATSSSYGLLQNIVMKFPRVRRHLSIPKTPSEQEKPIQFI 1027
+ +L +H +G PWW +I +T+ LR A+TLPLA Q+ + AK+E L+P +K + + + R + G K + K +R + Y R+ + +K +L WIQLP+WI +SFALRN+S TG A S ++ + G+LWF +L+ PD ++LP + + NL+ +E+ ++ S +T R ++ L+ ++ VPS++ LYW SS GL QN++++ P R+ IP T S+ E P + I
Sbjct: 67 AEEVLLGVHAATGLPWWGSILLSTVALRGAVTLPLAAYQHYILAKVENLQPEIKTIARHLNQEVAVRANQLGWSKRDARLTYLKNMRRLISELYVRDNCHPFKATVLVWIQLPMWIFMSFALRNLS-----TG----AAHSEGFSVQEQLATGGILWFPDLTAPDSTWILPISVGVINLLIVEICALQKIGMSRFQTYITYFVRAMSVLMIPIAATVPSSIVLYWLCSSFVGLSQNLLLRSPGFRQLCRIPSTKSDSETPYKDI 321 The following BLAST results are available for this feature:
BLAST of TCONS_00013308 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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