TCONS_00013308-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00013308-protein
Unique NameTCONS_00013308-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length360

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00013308-protein ID=TCONS_00013308-protein|Name=TCONS_00013308-protein|organism=Clytia hemisphaerica|type=polypeptide|length=360bp
KRTQKNMQGKGINILNTLKMRLLLARTGWLSSKIKYTSPKALACHGHFIS
PHDKGGVSMHCHQPRRMSSYYTFPLFTSTQTILENIHLYSGFPWWATIAC
TTILLRTAITLPLAIKQNKMTAKMELLKPLLKEVTDAVRYNIITRGQRDG
KGKTQIQAELFKELRSYTKDFYQRNGINTWKLFMLPWIQLPLWITISFAL
RNISGWIPNTGVESEAIDSTLYAPAAGVEIEGLLWFSNLSVPDPYYVLPC
VLLLTNLINIELNTFRQQTPSTMSKVLTNTFRGLTCLVFLVSTQVPSAMS
LYWATSSSYGLLQNIVMKFPRVRRHLSIPKTPSEQEKPIQFIREQMGVRV
QRFLELQKKS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_007438XLOC_007438Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00013308TCONS_00013308Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001708Membrane_insert_OXA1/ALB3/YidC
Vocabulary: Biological Process
TermDefinition
GO:0051205protein insertion into membrane
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0051205 protein insertion into membrane
cellular_component GO:0016021 integral component of membrane
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001708Membrane insertase OXA1/ALB3/YidCPFAMPF0209660KD_IMPcoord: 94..318
e-value: 6.6E-19
score: 68.3

Blast
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BLAST of TCONS_00013308-protein vs. Swiss-Prot (Human)
Match: COX18 (Mitochondrial inner membrane protein COX18 OS=Homo sapiens GN=COX18 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 5.403e-45
Identity = 87/264 (32.95%), Postives = 144/264 (54.55%), Query Frame = 0 
Query:   79 TQTILENIHLYSGFPWWATIACTTILLRTAITLPLAIKQNKMTAKMELLKPLLKEVTDAVRYNIITRGQRDGKGKTQIQAELFKELRSYTKDFYQRNGINTWKLFMLPWIQLPLWITISFALRNISGWIPNTGVESEAIDSTLYAPAAGVEIEGLLWFSNLSVPDPYYVLPCVLLLTNLINIELNTFRQQTPSTMSKVLTNTFRGLTCLVFLVSTQVPSAMSLYWATSSSYGLLQNIVMKFPRVRRHLSIPKTPSEQEKPIQFI 342
             + +L  +H  +G PWW +I  +T+ LR A+TLPLA  Q+ + AK+E L+P +K +   +   +  R  + G  K   +    K +R    + Y R+  + +K  +L WIQLP+WI +SFALRN+S     TG    A  S  ++    +   G+LWF +L+ PD  ++LP  + + NL+ +E+   ++   S     +T   R ++ L+  ++  VPS++ LYW  SS  GL QN++++ P  R+   IP T S+ E P + I
Sbjct:   67 AEEVLLGVHAATGLPWWGSILLSTVALRGAVTLPLAAYQHYILAKVENLQPEIKTIARHLNQEVAVRANQLGWSKRDARLTYLKNMRRLISELYVRDNCHPFKATVLVWIQLPMWIFMSFALRNLS-----TG----AAHSEGFSVQEQLATGGILWFPDLTAPDSTWILPISVGVINLLIVEICALQKIGMSRFQTYITYFVRAMSVLMIPIAATVPSSIVLYWLCSSFVGLSQNLLLRSPGFRQLCRIPSTKSDSETPYKDI 321
The following BLAST results are available for this feature:
BLAST of TCONS_00013308-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
COX185.403e-4532.95Mitochondrial inner membrane protein COX18 OS=Homo... [more]
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