TCONS_00013285 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013285
Unique NameTCONS_00013285
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length844

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013285 ID=TCONS_00013285|Name=TCONS_00013285|organism=Clytia hemisphaerica|type=transcript|length=844bp
GAAGTGTCTTTTTGCTCTAAATATGGTAACTTAATTCGCCTGGCCCTTCT
CCTTTGTTCTGATGTTGAATAATAACCAAATTTCGGCCGTCATTTGGATG
TTCCCGaaacattttttagcattttcaaaaaaaaagaagctgtCTGACAT
TTCAGGGGGTTCAAAAATTCccctttttgtttgaaaaaggtATAAATTAA
AAGATTGAATACATCAGTTCTCTATATTTGAGATATCACTCAACGCATCA
AAATGGCTTCTTTATATTTTATTCTTTCACTTTTCGTTGCCGGCTCTTTG
GCTGCTACTTTTAATGATTGTGgaggatCTTCTGCACGTTTGAAAAGTGT
CACATTATCACCTTCCCCTCTATTATTGAAAACCggaaagaaaattgatt
tttcctaCGATATTGAAGTCCTGAAACCTTTTCCACAAGCCATCGATGTT
GTATTGACcttgaaaagaaaaatcctCTGGGGATACGTTGGTGGTGTTTG
CACCATCTTGGATAAAGCTATTCCCGATGATGCAGGAGTCAAGGGAAGCA
TCTGCCAGCAACACTTGACCTGTGATATGTTACAAAAACTTCAAGATCAA
GCTAATCAAGCTACCAAATATCCATGCCCTATGCCTGTTGGTACATACAC
CAAGAAATTGAGCGTCACCCTCCCAACCTTTGATGCTGGTACCCTAGGAT
CAGTTCTCGGAGGAGGAACTTATCAAATCGAAATCGAGATGAAGAGAGGC
AGTGAACTTTTGGCTTGCGCTAAAATTAGTGACTTGACTGTCGAATTGTA
AATACACCTTTCGTTTTCTGAGAATATATCTTAAAAAATACTTA
Run BLAST on NCBI

protein sequence of TCONS_00013285-protein

>TCONS_00013285-protein ID=TCONS_00013285-protein|Name=TCONS_00013285-protein|organism=Clytia hemisphaerica|type=polypeptide|length=182bp
MASLYFILSLFVAGSLAATFNDCGGSSARLKSVTLSPSPLLLKTGKKIDF
SYDIEVLKPFPQAIDVVLTLKRKILWGYVGGVCTILDKAIPDDAGVKGSI
CQQHLTCDMLQKLQDQANQATKYPCPMPVGTYTKKLSVTLPTFDAGTLGS
VLGGGTYQIEIEMKRGSELLACAKISDLTVEL
Run BLAST on NCBI

transcript from alignment at sc0000164:300500..302596+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013285 ID=TCONS_00013285|Name=TCONS_00013285|organism=Clytia hemisphaerica|type=transcript|length=2097bp|location=Sequence derived from alignment at sc0000164:300500..302596+ (Clytia hemisphaerica)
GAAGTGTCTTTTTGCTCTAAATATGGTAACTTAATTCGCCTGGCCCTTCT
CCTTTGTTCTGATGTTGAATAATAACCAAATTTCGGCCGTCATTTGGATG
TTCCCGaaacattttttagcattttcaaaaaaaaagaagctgtCTGACAT
TTCAGGGGGTTCAAAAATTCccctttttgtttgaaaaaggtATAAATTAA
AAGATTGAATACATCAGTTCTCTATATTTGAGATATCACTCAACGCATCA
AAATGGCTTCTTTATATTTTATTCTTTCACTTTTCGTTGCCGGCTCTTTG
GCTGCTACTTTTAATGATTGTGgaggtaaaatatttttttgaataaaatc
attAGATAGTTTTAGTAAGTTTAGTGAAATATCTTgtttatacacctttt
cgaccgtagtcgcgtggggcattttttgtccactttatcccactaaaact
gtcccaatcctttttttacgcatttttctattgtctataggtgcgaaaaa
aatgCCAgcacgactacggtcgaaaaggagTATTGAATTGCTAGTCTAAA
GTTTTCCTTCCCTGAACAACTTTATTTACCATATGAACTGCATgataaat
aatgaaaaatagaGTAAATATTAGGCCAAAACCAAAGAATGGCTCTTTCC
AGAAAAACAATTTACAtgggggagtggaggatatattgtccggggtgtag
caaaaaatcatcaaaatttgccttgtctggGGTGTAAATTTGGTgtgtcc
ggggggtcagcagatgctccggggggtaaaacctattgtccggggggcaA
AATTCAccctgtccggggggtaaatcactaaaaattgttatatcctccac
cctccatgtaaaatttttttctggaagagcccaataagaTCATTTGTGAT
ACTAatttctatctttttttaatttcaggatCTTCTGCACGTTTGAAAAG
TGTCACATTATCACCTTCCCCTCTATTATTGAAAACCggaaagaaaattg
atttttcctaCGATATTGAAGTCCTGAAACCTTTTCCACAAGCCATCGAT
GTTGTATTGACcttgaaaagaaaaatcctCTGGGGATACGTTGGTGGTGT
TTGCACCATCTTGGATAAAGCTATTCCCGATGATGCAGGAGTCAAGGGAA
GCATCTGGTATGGTTAATTTTTTCAACCTTAATATTCCACTCTGGATTAT
ATTTTCGACTACTAGTACAAAATCActacttaattcaaattctatcaaaa
gttattaagttttgaaaaaacacttAAAGATTCAGGCCCAGCGGAAGTGG
GAaaactggggagacttcagcctccccacttttgagcaaatgagattttt
attctcaaatttctagcgAATTTTAcctgagccttcagcctccctaCAGC
TACGgttaaataaaacaattttgttactttttctaaagaatgcgtcattt
ttattacttcaaatgaccaatcaTTAAAGTATCTTATTAAAACTTCATCT
CATCTGATTTCAAAAACtatatttacaaaaatctataaacaagattttga
tttttcttataGCCAGCAACACTTGACCTGTGATATGTTACAAAAACTTC
AAGATCAAGCTAATCAAGCTACCAAATATCCATGCCCTATGCCTGTTGGT
ACATACACCAAGAAATTGAGCGTCACCCTCCCAACCTTTGATGCTGGTAC
CCTAGGATCAGTTCTCGGAGGAGTAAGTTGAACTACACATTTTTTCATAC
gaacatctaaaatttatgAAGCCTTTTCGAgtcttaagcctaaaaatatt
cttaacatgttcttattttgacaattttgtgagcatttttgcccattttc
ttaagaaattgaccgttttagagtctgtaaagccttaaaatgttcttaac
atttttgccatcaaagccttatattcttatatattgttcttatgaaaaac
taCACTTTCTTTTTCAGGGAACTTATCAAATCGAAATCGAGATGAAGAGA
GGCAGTGAACTTTTGGCTTGCGCTAAAATTAGTGACTTGACTGTCGAATT
GTAAATACACCTTTCGTTTTCTGAGAATATATCTTAAAAAATACTTA

Coding sequence (CDS) from alignment at sc0000164:300500..302596+

>TCONS_00013285 ID=TCONS_00013285|Name=TCONS_00013285|organism=Clytia hemisphaerica|type=CDS|length=2196bp|location=Sequence derived from alignment at sc0000164:300500..302596+ (Clytia hemisphaerica)
ATGGCTTCTTTATATTTTATTCTTTCACTTTTCGTTGCCGGCTCTTTGGC
TGCTACTTTTAATGATTGTGgaggatCTTCTGCACGTTTGAAAAGTGTCA
CATTATCACCTTCCCCTCTATTATTGAAAACCggaaagaaaattgatttt
tcctaCGATATTGAAGTCCTGAAACCTTTTCCACAAGCCATCGATGTTGT
ATTGACcttgaaaagaaaaatcctCTGGGGATACGTTGGTGGTGTTTGCA
CCATCTTGGATAAAGCTATTCCCGATGATGCAGGAGTCAAGGGAAGCATC
TGCCAGCAACACTTGACCTGTGATATGTTACAAAAACTTCAAGATCAAGC
TAATCAAGCTACCAAATATCCATGCCCTATGCCTGTTGGTACATACACCA
AGAAATTGAGCGTCACCCTCCCAACCTTTGATGCTGGTACCCTAGGATCA
GTTCTCGGAGGAGGAACTTATCAAATCGAAATCGAGATGAAGAGAGGCAG
TGAACTTTTGGCTTGCGCTAAAATTAGTGACTTGACTGTCGAATTGTAAA
TGGCTTCTTTATATTTTATTCTTTCACTTTTCGTTGCCGGCTCTTTGGCT
GCTACTTTTAATGATTGTGgaggatCTTCTGCACGTTTGAAAAGTGTCAC
ATTATCACCTTCCCCTCTATTATTGAAAACCggaaagaaaattgattttt
cctaCGATATTGAAGTCCTGAAACCTTTTCCACAAGCCATCGATGTTGTA
TTGACcttgaaaagaaaaatcctCTGGGGATACGTTGGTGGTGTTTGCAC
CATCTTGGATAAAGCTATTCCCGATGATGCAGGAGTCAAGGGAAGCATCT
GCCAGCAACACTTGACCTGTGATATGTTACAAAAACTTCAAGATCAAGCT
AATCAAGCTACCAAATATCCATGCCCTATGCCTGTTGGTACATACACCAA
GAAATTGAGCGTCACCCTCCCAACCTTTGATGCTGGTACCCTAGGATCAG
TTCTCGGAGGAGGAACTTATCAAATCGAAATCGAGATGAAGAGAGGCAGT
GAACTTTTGGCTTGCGCTAAAATTAGTGACTTGACTGTCGAATTGTAAAT
GGCTTCTTTATATTTTATTCTTTCACTTTTCGTTGCCGGCTCTTTGGCTG
CTACTTTTAATGATTGTGgaggatCTTCTGCACGTTTGAAAAGTGTCACA
TTATCACCTTCCCCTCTATTATTGAAAACCggaaagaaaattgatttttc
ctaCGATATTGAAGTCCTGAAACCTTTTCCACAAGCCATCGATGTTGTAT
TGACcttgaaaagaaaaatcctCTGGGGATACGTTGGTGGTGTTTGCACC
ATCTTGGATAAAGCTATTCCCGATGATGCAGGAGTCAAGGGAAGCATCTG
CCAGCAACACTTGACCTGTGATATGTTACAAAAACTTCAAGATCAAGCTA
ATCAAGCTACCAAATATCCATGCCCTATGCCTGTTGGTACATACACCAAG
AAATTGAGCGTCACCCTCCCAACCTTTGATGCTGGTACCCTAGGATCAGT
TCTCGGAGGAGGAACTTATCAAATCGAAATCGAGATGAAGAGAGGCAGTG
AACTTTTGGCTTGCGCTAAAATTAGTGACTTGACTGTCGAATTGTAAATG
GCTTCTTTATATTTTATTCTTTCACTTTTCGTTGCCGGCTCTTTGGCTGC
TACTTTTAATGATTGTGgaggatCTTCTGCACGTTTGAAAAGTGTCACAT
TATCACCTTCCCCTCTATTATTGAAAACCggaaagaaaattgatttttcc
taCGATATTGAAGTCCTGAAACCTTTTCCACAAGCCATCGATGTTGTATT
GACcttgaaaagaaaaatcctCTGGGGATACGTTGGTGGTGTTTGCACCA
TCTTGGATAAAGCTATTCCCGATGATGCAGGAGTCAAGGGAAGCATCTGC
CAGCAACACTTGACCTGTGATATGTTACAAAAACTTCAAGATCAAGCTAA
TCAAGCTACCAAATATCCATGCCCTATGCCTGTTGGTACATACACCAAGA
AATTGAGCGTCACCCTCCCAACCTTTGATGCTGGTACCCTAGGATCAGTT
CTCGGAGGAGGAACTTATCAAATCGAAATCGAGATGAAGAGAGGCAGTGA
ACTTTTGGCTTGCGCTAAAATTAGTGACTTGACTGTCGAATTGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007423XLOC_007423Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013285-exon-sc0000164-1491911889:300500..300824TCONS_00013285-exon-sc0000164-1491911889:300500..300824Clytia hemisphaericaexon
TCONS_00013285-exon-sc0000164-1510915933:300500..300824TCONS_00013285-exon-sc0000164-1510915933:300500..300824Clytia hemisphaericaexon
TCONS_00013285-exon-sc0000164-1575043694:300500..300824TCONS_00013285-exon-sc0000164-1575043694:300500..300824Clytia hemisphaericaexon
TCONS_00013285-exon-sc0000164-1491911889:301428..301656TCONS_00013285-exon-sc0000164-1491911889:301428..301656Clytia hemisphaericaexon
TCONS_00013285-exon-sc0000164-1510915933:301428..301656TCONS_00013285-exon-sc0000164-1510915933:301428..301656Clytia hemisphaericaexon
TCONS_00013285-exon-sc0000164-1575043694:301428..301656TCONS_00013285-exon-sc0000164-1575043694:301428..301656Clytia hemisphaericaexon
TCONS_00013285-exon-sc0000164-1491911889:302062..302221TCONS_00013285-exon-sc0000164-1491911889:302062..302221Clytia hemisphaericaexon
TCONS_00013285-exon-sc0000164-1510915933:302062..302221TCONS_00013285-exon-sc0000164-1510915933:302062..302221Clytia hemisphaericaexon
TCONS_00013285-exon-sc0000164-1575043694:302062..302221TCONS_00013285-exon-sc0000164-1575043694:302062..302221Clytia hemisphaericaexon
TCONS_00013285-exon-sc0000164-1491911889:302467..302596TCONS_00013285-exon-sc0000164-1491911889:302467..302596Clytia hemisphaericaexon
TCONS_00013285-exon-sc0000164-1510915933:302467..302596TCONS_00013285-exon-sc0000164-1510915933:302467..302596Clytia hemisphaericaexon
TCONS_00013285-exon-sc0000164-1575043694:302467..302596TCONS_00013285-exon-sc0000164-1575043694:302467..302596Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013285-proteinTCONS_00013285-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000164supercontigsc0000164:300500..302596 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.111741	0.21793	0.0632594	0.123779	0.226033	0.357229	0.0718303	0.268987	0.235405	0.408222	0.735855	0.297675	453.138	335.528	639.737	1576.26	68.5328	75.6605	1096.43	978.473	463.481	474.43	437.466	545.008	547.969	665.021	3.52404	3.10687	6.51124	6.82347
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR028996GM2-AP
Vocabulary: Biological Process
TermDefinition
GO:0006689ganglioside catabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0008047enzyme activator activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006689 ganglioside catabolic process
molecular_function GO:0008047 enzyme activator activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013285 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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