TCONS_00013256 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013256
Unique NameTCONS_00013256
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length547

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013256 ID=TCONS_00013256|Name=TCONS_00013256|organism=Clytia hemisphaerica|type=transcript|length=547bp
TGTACGGAAAGTTTGTCAgtgaaaaaattactttttttaaagttttgtac
TCCTCAGATGGTTCACCAGCAGGCTCTTTTTTTGTGTTTCCTTTTGCAAT
ATCCTCAATTGAAGGCTAAAACAAAgattatcaaataaaaattattatct
TTCTGTCAGAAGTGAAAATAATTAGAGAAAGGGTTGAATACTATAAGATT
ATATTAGATATCAATATTTTGTTTAATAAAACCTAAATGGAAGGGTGGAC
AGCTAATATTACAATATTTTTAAgactaaaaaaataaacaataccATTTT
GGCAGTAGCCATCTCTTTTTGGCAATGTTGATAGCATTCTTTCGTATCTG
CAAGTGCCTTCTTTAGACTTTCAAGAATCTCAGcgacttttttgttattt
tcttcaCACTTCACATGGACAGAAGCAGGGTCTGCGTCTATCTTCTTATC
ATACATAAGATTTCCCTTTCCTTTAAATAAATATAGTTTTCGGGAAAATG
CGACAGtctttgaataactaattactccagcagaaattttttaataa
Run BLAST on NCBI

transcript from alignment at sc0000163:416774..417382-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013256 ID=TCONS_00013256|Name=TCONS_00013256|organism=Clytia hemisphaerica|type=transcript|length=609bp|location=Sequence derived from alignment at sc0000163:416774..417382- (Clytia hemisphaerica)
TGTACGGAAAGTTTGTCAGTGAAAAAATTACTTTTTTTAAAGTTTTGTAC
TCCTCAGATGGTTCACCAGCAGGCTCTTTTTTTGTGTTTCCTTTTGCAAT
ATCCTCAATTGAAGGCTAAAACAAAGATTATCAAATAAAAATTATTATCT
TTCTGTCAGAAGTGAAAATAATTAGAGAAAGGGTTGAATACTATAAGATT
ATATTAGATATCAATATTTTGTTTAATAAAACCTAAATGGAAGGGTGGAC
AGCTAATATTACAATATTTTTAAGACTAAAAAAATAAACAATACCATTTT
GGCAGTAGCCATCTCTTTTTGGCAATGTTGATAGCATTCTTTCGTATCTG
CAAGTGCCTTCTTTAGACTTTCAAGAATCTCAGCGACTTTTTTGTTATTT
TCTTCACACTTCACATGGACAGAAGCAGGNTTTCAAGAATCTCAGCAACT
TTTTTGTTATTTTCTTCACACTTCACATGGACAGAAGCAGGGTCTGCGTC
TATCTTCTTATCATACATAAGATTTCCCTTTCCTTTAAATAAATATAGTT
TTCGGGAAAATGCGACAGTCTTTGAATAACTAATTACTCCAGCAGAAATT
TTTTAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007399XLOC_007399Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013256-exon-sc0000163-1575043694:416955..417382TCONS_00013256-exon-sc0000163-1575043694:416955..417382Clytia hemisphaericaexon
TCONS_00013256-exon-sc0000163-1575043694:416774..416892TCONS_00013256-exon-sc0000163-1575043694:416774..416892Clytia hemisphaericaexon
TCONS_00013256-exon-sc0000163-1510915933:416955..417382TCONS_00013256-exon-sc0000163-1510915933:416955..417382Clytia hemisphaericaexon
TCONS_00013256-exon-sc0000163-1510915933:416774..416892TCONS_00013256-exon-sc0000163-1510915933:416774..416892Clytia hemisphaericaexon
TCONS_00013256-exon-sc0000163-1491911889:416955..417382TCONS_00013256-exon-sc0000163-1491911889:416955..417382Clytia hemisphaericaexon
TCONS_00013256-exon-sc0000163-1491911889:416774..416892TCONS_00013256-exon-sc0000163-1491911889:416774..416892Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000163supercontigsc0000163:416774..417382 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.431809	0.249261	0.240234	0.634765	0	0	0.227037	0.199414	0	0.559423	0.608429	0.2381	1.3298	0.726259	0.933406	0.701507	1.0137	1.12327	1.58776	0.818673	1.28444	0.615382	0.669994	0	0.406404	0	0	0.277724	0.371742	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013256 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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