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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013223 ID=TCONS_00013223|Name=TCONS_00013223|organism=Clytia hemisphaerica|type=transcript|length=3697bpRun BLAST on NCBI transcript from alignment at sc0000163:15304..31104- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00013223 ID=TCONS_00013223|Name=TCONS_00013223|organism=Clytia hemisphaerica|type=transcript|length=15801bp|location=Sequence derived from alignment at sc0000163:15304..31104- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00013223 vs. Swiss-Prot (Human)
Match: PP2BA (Serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform OS=Homo sapiens GN=PPP3CA PE=1 SV=1) HSP 1 Score: 567 bits (1460), Expect = 0.000e+0 Identity = 255/305 (83.61%), Postives = 284/305 (93.11%), Query Frame = 2
Query: 245 ERISKNVPMPPTHRLTVKEVFDSDSKPRIDVLKAHFILEGRVDKEVALKLIENGANILRQENTMLDIDAPITVCGDIHGQFYDLMKLFEVGGSPATTRYLFLGDYVDRGYFSIECVLYLWALKILYQKTLFLLRGNHECRHLTEYFTFKTECKMKYSEEIYDACMDAFDCLPLAAVMNQQFLCVHGGLSPEIHTLDDIRKIDRFREPPAFGPMCDMLWSDPLEDYGNEKSAEHFTHNSVRGCSYFYSYQASCDFLQRNNLLSIIRAHEAQDAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNNKG 1159
+R+ K VP PP+HRLT KEVFD+D KPR+D+LKAH + EGR+++ VAL++I GA+ILRQE +LDIDAP+TVCGDIHGQF+DLMKLFEVGGSPA TRYLFLGDYVDRGYFSIECVLYLWALKILY KTLFLLRGNHECRHLTEYFTFK ECK+KYSE +YDACMDAFDCLPLAA+MNQQFLCVHGGLSPEI+TLDDIRK+DRF+EPPA+GPMCD+LWSDPLED+GNEK+ EHFTHN+VRGCSYFYSY A C+FLQ NNLLSI+RAHEAQDAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNNK
Sbjct: 15 DRVVKAVPFPPSHRLTAKEVFDNDGKPRVDILKAHLMKEGRLEESVALRIITEGASILRQEKNLLDIDAPVTVCGDIHGQFFDLMKLFEVGGSPANTRYLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECKIKYSERVYDACMDAFDCLPLAALMNQQFLCVHGGLSPEINTLDDIRKLDRFKEPPAYGPMCDILWSDPLEDFGNEKTQEHFTHNTVRGCSYFYSYPAVCEFLQHNNLLSILRAHEAQDAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNNKA 319 HSP 2 Score: 220.705 bits (561), Expect = 3.548e-61 Identity = 124/175 (70.86%), Postives = 140/175 (80.00%), Query Frame = 2
Query: 1541 LRVFSIIAAVLKYENNVMNIRQFNCTPHPYWLPNFMDVFTWSIPFVGEKVTEMLVNVLNICTDDELDEPVDEQD--ESAKRKEVIRNKIRAIGKMARVFTXXXXXXXXXXXXKGLTPSGTLPVGLLSGGRDSLNSA-LSDLSMDSGHK-----NKIQGFADAKTLDRVNERMPPR 2041
L V++ AAVLKYENNVMNIRQFNC+PHPYWLPNFMDVFTWS+PFVGEKVTEMLVNVLNIC+DDEL D D +A RKEVIRNKIRAIGKMARVF+VLREESESVL LKGLTP+G LP G+LSGG+ +L SA + + D K +KI F +AK LDR+NERMPPR
Sbjct: 312 LDVYNNKAAVLKYENNVMNIRQFNCSPHPYWLPNFMDVFTWSLPFVGEKVTEMLVNVLNICSDDELGSEEDGFDGATAAARKEVIRNKIRAIGKMARVFSVLREESESVLTLKGLTPTGMLPSGVLSGGKQTLQSATVEAIEADEAIKGFSPQHKITSFEEAKGLDRINERMPPR 486 The following BLAST results are available for this feature:
BLAST of TCONS_00013223 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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