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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013193 ID=TCONS_00013193|Name=TCONS_00013193|organism=Clytia hemisphaerica|type=transcript|length=925bp
NNTAACATTATCTTAAATCGCCTGCAACCATGGTATGAAGCTCAACTTAG
TGATGAGCAAAACGGTTTCAGGAAAGATAGAGGGACGACGGACGGCATTT
TTGAACTGAGCCGTGTACAGCAAATCACTAACCGAAAGAAGCAGCCCCTC
TTCCTACTGTTTGTAGATTTATCTGCAGCATTTGATCACATTCCGAGACA
TTGGTTATTCGAATCAATCAAAATGCGATTTCCCGATAACAATCTACCAC
CACTGTTCACCATACTCGAACAACTCTACAAACAGACAACTCTCACTTTC
CAGGAATCAAATACCTTTCAAACTACATCAGGAGTCCGCCAAGGAGGACC
AGAAAGCCCGTTCCTCTTTAATCTCTACATCGATTTTGTCATGCCTGTCT
TTATGAGTGAAGCCAATGCAGAAAGTATCAacttctataaacattcatac
CGTTTGAATCCAAGAAGTATCTCTAGAGCAAATAGAATATCTATGAGAGA
GAACAATTTACGCAATTGGGGGACATCGACATTACCGTGGTGCGGATACG
CGGACGATCTCATCCTTTTTCTCATCAGTCAACTAGATTTACAAAGCTCT
ATCAACTTTCTAGATCAAACGTTTACTCGATTTGGACTATCAATAAACGC
TTTGAAAACCGAATCTATGATACTTAGCTGTACCGAACAGGATTACCCAA
AATCCATCATCAAATTGAGGAACAANAAAAGACTCCATGAAATATGTGGT
ACATCAGATTTGTCCAATTTCATTGGAAAACAGCAGCTGGAATATGCTAA
ACATGTTATTCGTATGACACACGGGCGTTCCATTAAACTGTTGATGTTCA
ACGATGATAAGTATACGAAACGTGGAAGACCATTTAAAACTCTGCTAGAT
CAAGTAACTGATCAAAACTCCCTTA Run BLAST on NCBI protein sequence of TCONS_00013193-protein >TCONS_00013193-protein ID=TCONS_00013193-protein|Name=TCONS_00013193-protein|organism=Clytia hemisphaerica|type=polypeptide|length=308bp
XNIILNRLQPWYEAQLSDEQNGFRKDRGTTDGIFELSRVQQITNRKKQPL
FLLFVDLSAAFDHIPRHWLFESIKMRFPDNNLPPLFTILEQLYKQTTLTF
QESNTFQTTSGVRQGGPESPFLFNLYIDFVMPVFMSEANAESINFYKHSY
RLNPRSISRANRISMRENNLRNWGTSTLPWCGYADDLILFLISQLDLQSS
INFLDQTFTRFGLSINALKTESMILSCTEQDYPKSIIKLRNXKRLHEICG
TSDLSNFIGKQQLEYAKHVIRMTHGRSIKLLMFNDDKYTKRGRPFKTLLD
QVTDQNSL Run BLAST on NCBI transcript from alignment at sc0000162:411701..412625 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013193 ID=TCONS_00013193|Name=TCONS_00013193|organism=Clytia hemisphaerica|type=transcript|length=925bp|location=Sequence derived from alignment at sc0000162:411701..412625 (Clytia hemisphaerica)
TAAGGGAGTTTTGATCAGTTACTTGATCTAGCAGAGTTTTAAATGGTCTT
CCACGTTTCGTATACTTATCATCGTTGAACATCAACAGTTTAATGGAACG
CCCGTGTGTCATACGAATAACATGTTTAGCATATTCCAGCTGCTGTTTTC
CAATGAAATTGGACAAATCTGATGTACCACATATTTCATGGAGTCTTTTN
TTGTTCCTCAATTTGATGATGGATTTTGGGTAATCCTGTTCGGTACAGCT
AAGTATCATAGATTCGGTTTTCAAAGCGTTTATTGATAGTCCAAATCGAG
TAAACGTTTGATCTAGAAAGTTGATAGAGCTTTGTAAATCTAGTTGACTG
ATGAGAAAAAGGATGAGATCGTCCGCGTATCCGCACCACGGTAATGTCGA
TGTCCCCCAATTGCGTAAATTGTTCTCTCTCATAGATATTCTATTTGCTC
TAGAGATACTTCTTGGATTCAAACGgtatgaatgtttatagaagtTGATA
CTTTCTGCATTGGCTTCACTCATAAAGACAGGCATGACAAAATCGATGTA
GAGATTAAAGAGGAACGGGCTTTCTGGTCCTCCTTGGCGGACTCCTGATG
TAGTTTGAAAGGTATTTGATTCCTGGAAAGTGAGAGTTGTCTGTTTGTAG
AGTTGTTCGAGTATGGTGAACAGTGGTGGTAGATTGTTATCGGGAAATCG
CATTTTGATTGATTCGAATAACCAATGTCTCGGAATGTGATCAAATGCTG
CAGATAAATCTACAAACAGTAGGAAGAGGGGCTGCTTCTTTCGGTTAGTG
ATTTGCTGTACACGGCTCAGTTCAAAAATGCCGTCCGTCGTCCCTCTATC
TTTCCTGAAACCGTTTTGCTCATCACTAAGTTGAGCTTCATACCATGGTT
GCAGGCGATTTAAGATAATGTTANN Coding sequence (CDS) from alignment at sc0000162:411701..412625 >TCONS_00013193 ID=TCONS_00013193|Name=TCONS_00013193|organism=Clytia hemisphaerica|type=CDS|length=924bp|location=Sequence derived from alignment at sc0000162:411701..412625 (Clytia hemisphaerica)
AAGGGAGTTTTGATCAGTTACTTGATCTAGCAGAGTTTTAAATGGTCTTC
CACGTTTCGTATACTTATCATCGTTGAACATCAACAGTTTAATGGAACGC
CCGTGTGTCATACGAATAACATGTTTAGCATATTCCAGCTGCTGTTTTCC
AATGAAATTGGACAAATCTGATGTACCACATATTTCATGGAGTCTTTTNT
TGTTCCTCAATTTGATGATGGATTTTGGGTAATCCTGTTCGGTACAGCTA
AGTATCATAGATTCGGTTTTCAAAGCGTTTATTGATAGTCCAAATCGAGT
AAACGTTTGATCTAGAAAGTTGATAGAGCTTTGTAAATCTAGTTGACTGA
TGAGAAAAAGGATGAGATCGTCCGCGTATCCGCACCACGGTAATGTCGAT
GTCCCCCAATTGCGTAAATTGTTCTCTCTCATAGATATTCTATTTGCTCT
AGAGATACTTCTTGGATTCAAACGgtatgaatgtttatagaagtTGATAC
TTTCTGCATTGGCTTCACTCATAAAGACAGGCATGACAAAATCGATGTAG
AGATTAAAGAGGAACGGGCTTTCTGGTCCTCCTTGGCGGACTCCTGATGT
AGTTTGAAAGGTATTTGATTCCTGGAAAGTGAGAGTTGTCTGTTTGTAGA
GTTGTTCGAGTATGGTGAACAGTGGTGGTAGATTGTTATCGGGAAATCGC
ATTTTGATTGATTCGAATAACCAATGTCTCGGAATGTGATCAAATGCTGC
AGATAAATCTACAAACAGTAGGAAGAGGGGCTGCTTCTTTCGGTTAGTGA
TTTGCTGTACACGGCTCAGTTCAAAAATGCCGTCCGTCGTCCCTCTATCT
TTCCTGAAACCGTTTTGCTCATCACTAAGTTGAGCTTCATACCATGGTTG
CAGGCGATTTAAGATAATGTTANN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013193-exon-sc0000162-1491911889:411701..412625 | TCONS_00013193-exon-sc0000162-1491911889:411701..412625 | Clytia hemisphaerica | exon |
| TCONS_00013193-exon-sc0000162-1510915933:411701..412625 | TCONS_00013193-exon-sc0000162-1510915933:411701..412625 | Clytia hemisphaerica | exon |
| TCONS_00013193-exon-sc0000162-1575043694:411701..412625 | TCONS_00013193-exon-sc0000162-1575043694:411701..412625 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000162 | supercontig | sc0000162:411701..412625 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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