TCONS_00013186 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013186
Unique NameTCONS_00013186
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2188

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013186 ID=TCONS_00013186|Name=TCONS_00013186|organism=Clytia hemisphaerica|type=transcript|length=2188bp
CTTTAATCCGAAGATATTATAAGCTTCCTGCTgggtaaagttttttttac
ttccCAGGTAGCAAATAACCTGactaattttagatttttcccTACTTAAG
TTTTAAGTTTGGTCTTCTTAAGTATTTCATTATCATCACATGACCTGAAA
ATATTCTTGGTCTAATAAAATGGGTTGCATGTTTTTTCTTGTTCACAAGA
AgtacattattttcttttgaaattattgtttttGTTGTAACATGAGATAT
TAAGACAGCTAAATAGCTGATTTTAGTTTAAGAGATTCAGGATACATAAA
GTTTTAACAAGGATTTGTTTAATATATTTCTAGACAGCATAATGAAAGAT
TATGATAATCTTACTCACTTGTCTCTGAATGTAAGAGTTTACAAAAAACG
ATGGTTGATATTGCTGGTTTTCTCCATAAATTCATTGGCCAATTCAATGT
TATTTACCTGTATAACCTCAATCAATTTAATTATATCGAAGTATTATGGA
ATATCTCCTGAACTTACTGATTGGGCTTCAAATAGTTTTCCATTTGTATT
TGTTTTCATTGCTCTACCCTTTGCATATTTCATGGATTCATTTGGTGTCA
GAACATTACTACTAGTTGGATCAAGTTTGAATGCAATATGTGTTTGTTTA
CATCTTGCTGGTACATTTAGACAACAAGGCATATGGTTTGTATTAGCTGG
CCAATTTGTTGCTGCTTTTTCGGTTGGTGCTTACCTTCAAGTTACGACAG
TAGCATCAGTTTGGTTTCCAGAGTCTGAACAGGCCATAGCTACTAGTATA
GCACTGGCCTGTAATATAATTGGGAATTCCATAGGATATTTACAACCTTC
ATACATGGTCCCAGACAGTGAAAATATGGACAAAATTTATAAAGGACTTC
TTGAAATGAATATATCTCATGTTGCTTTTCTTGGGATGTGTTTGATATCT
ACATATttgttttttgaagaaaagcCCTTATTACCACCCTCATATGCCAA
AGCAGTTGTAGATAATACAAATCATCCTGAACAATGTGTGGAAACTCCTG
GATTCAAAACATCACTTAAAACACTCATCACTGATAAaaactttgttatt
ttttcatttgtttttggcATATCATTTGGATTAAACAATATGTTTCTGAT
TTGTCTCAATCAGATGTCCACACACATAACTAATTCAACCTTTATTGGTT
GGATCGGATTCTTTGGAAATATTTCAAGTTTCTTTGGAATTTTAATGTTT
GCAGCTATTCTGGATAAGTACAAATGTTACAGGAAAATGAccattttgtt
attttctttgcAGATTGTGTGCTGGGTATTATTTTCTATAGTTTTACTTT
ATCTGAAAACGACAGTTTCATTGTTCTTGACCTACATATTATTATCCTTT
TGCAATGTTCCGTTCATGACAGTTGGATTAACGTATGTCACTGAACTGAC
TTATCCTATACCTGAAATTTTCTCAACCGCACTTATTATGATATTTGGAA
GTTTGTGTGAAGTTGTGTTTGTACTTGTATTTGGAAAATTGATTGATGAG
CAACTCTTATTTTTGATGTGCACTATTGTTGGAGGGTTGTATGCCGTTGG
TTTCTTAttgactttttttatcaaagaaaacTTGAAAAGATCCCAAATTG
AATCTCAGAAGTCATCAATACCATCAACCAGCCCAAAAGGAGTTTGATGG
CAATTATAACAATCTGACTGAAAATAAACATGTAATGAAAAAACCTAACA
TGGAAATTCCAGTTTTCAAACATGCTACAAACAGAATACTATTCAACCCT
TAGGCATATGTCTTAATTATATATCTAGAGAGATAGGACAGTATAGAAca
aactcttcatacaaaaattatgggaaacgcatatttggactttgcaatCT
ATGCTGCACACAGGCATTTAAGCTAAAGTCTATTTTATAATGTATATATC
TATCTATTATATAtctatttttaatgttttgtatCAATTTTCTCGTTTAA
ACTCTATGATTTATTCCTATCTATCTCtgatctatttttctttagtaGTA
GTACTTATCAAAATTTCCAATCTGACCAGGCTAGTTTATTTCTAATGCAA
CTTGATATGTATCATACCACAGAATATACTGTTCGTTTCATATCTTTTAA
TGGTGTTCATTTTCTCCACACTGACTATCACATAATCA
Run BLAST on NCBI

protein sequence of TCONS_00013186-protein

>TCONS_00013186-protein ID=TCONS_00013186-protein|Name=TCONS_00013186-protein|organism=Clytia hemisphaerica|type=polypeptide|length=451bp
MKDYDNLTHLSLNVRVYKKRWLILLVFSINSLANSMLFTCITSINLIISK
YYGISPELTDWASNSFPFVFVFIALPFAYFMDSFGVRTLLLVGSSLNAIC
VCLHLAGTFRQQGIWFVLAGQFVAAFSVGAYLQVTTVASVWFPESEQAIA
TSIALACNIIGNSIGYLQPSYMVPDSENMDKIYKGLLEMNISHVAFLGMC
LISTYLFFEEKPLLPPSYAKAVVDNTNHPEQCVETPGFKTSLKTLITDKN
FVIFSFVFGISFGLNNMFLICLNQMSTHITNSTFIGWIGFFGNISSFFGI
LMFAAILDKYKCYRKMTILLFSLQIVCWVLFSIVLLYLKTTVSLFLTYIL
LSFCNVPFMTVGLTYVTELTYPIPEIFSTALIMIFGSLCEVVFVLVFGKL
IDEQLLFLMCTIVGGLYAVGFLLTFFIKENLKRSQIESQKSSIPSTSPKG
V
Run BLAST on NCBI

transcript from alignment at sc0000162:219764..221951

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013186 ID=TCONS_00013186|Name=TCONS_00013186|organism=Clytia hemisphaerica|type=transcript|length=2188bp|location=Sequence derived from alignment at sc0000162:219764..221951 (Clytia hemisphaerica)
TGATTATGTGATAGTCAGTGTGGAGAAAATGAACACCATTAAAAGATATG
AAACGAACAGTATATTCTGTGGTATGATACATATCAAGTTGCATTAGAAA
TAAACTAGCCTGGTCAGATTGGAAATTTTGATAAGTACTACtactaaaga
aaaatagatcaGAGATAGATAGGAATAAATCATAGAGTTTAAACGAGAAA
ATTGatacaaaacattaaaaatagaTATATAATAGATAGATATATACATT
ATAAAATAGACTTTAGCTTAAATGCCTGTGTGCAGCATAGattgcaaagt
ccaaatatgcgtttcccataatttttgtatgaagagtttgTTCTATACTG
TCCTATCTCTCTAGATATATAATTAAGACATATGCCTAAGGGTTGAATAG
TATTCTGTTTGTAGCATGTTTGAAAACTGGAATTTCCATGTTAGGTTTTT
TCATTACATGTTTATTTTCAGTCAGATTGTTATAATTGCCATCAAACTCC
TTTTGGGCTGGTTGATGGTATTGATGACTTCTGAGATTCAATTTGGGATC
TTTTCAAgttttctttgataaaaaaagtcaaTAAGAAACCAACGGCATAC
AACCCTCCAACAATAGTGCACATCAAAAATAAGAGTTGCTCATCAATCAA
TTTTCCAAATACAAGTACAAACACAACTTCACACAAACTTCCAAATATCA
TAATAAGTGCGGTTGAGAAAATTTCAGGTATAGGATAAGTCAGTTCAGTG
ACATACGTTAATCCAACTGTCATGAACGGAACATTGCAAAAGGATAATAA
TATGTAGGTCAAGAACAATGAAACTGTCGTTTTCAGATAAAGTAAAACTA
TAGAAAATAATACCCAGCACACAATCTgcaaagaaaataacaaaatggTC
ATTTTCCTGTAACATTTGTACTTATCCAGAATAGCTGCAAACATTAAAAT
TCCAAAGAAACTTGAAATATTTCCAAAGAATCCGATCCAACCAATAAAGG
TTGAATTAGTTATGTGTGTGGACATCTGATTGAGACAAATCAGAAACATA
TTGTTTAATCCAAATGATATgccaaaaacaaatgaaaaaataacaaagtt
tTTATCAGTGATGAGTGTTTTAAGTGATGTTTTGAATCCAGGAGTTTCCA
CACATTGTTCAGGATGATTTGTATTATCTACAACTGCTTTGGCATATGAG
GGTGGTAATAAGGgcttttcttcaaaaaacaaATATGTAGATATCAAACA
CATCCCAAGAAAAGCAACATGAGATATATTCATTTCAAGAAGTCCTTTAT
AAATTTTGTCCATATTTTCACTGTCTGGGACCATGTATGAAGGTTGTAAA
TATCCTATGGAATTCCCAATTATATTACAGGCCAGTGCTATACTAGTAGC
TATGGCCTGTTCAGACTCTGGAAACCAAACTGATGCTACTGTCGTAACTT
GAAGGTAAGCACCAACCGAAAAAGCAGCAACAAATTGGCCAGCTAATACA
AACCATATGCCTTGTTGTCTAAATGTACCAGCAAGATGTAAACAAACACA
TATTGCATTCAAACTTGATCCAACTAGTAGTAATGTTCTGACACCAAATG
AATCCATGAAATATGCAAAGGGTAGAGCAATGAAAACAAATACAAATGGA
AAACTATTTGAAGCCCAATCAGTAAGTTCAGGAGATATTCCATAATACTT
CGATATAATTAAATTGATTGAGGTTATACAGGTAAATAACATTGAATTGG
CCAATGAATTTATGGAGAAAACCAGCAATATCAACCATCGTTTTTTGTAA
ACTCTTACATTCAGAGACAAGTGAGTAAGATTATCATAATCTTTCATTAT
GCTGTCTAGAAATATATTAAACAAATCCTTGTTAAAACTTTATGTATCCT
GAATCTCTTAAACTAAAATCAGCTATTTAGCTGTCTTAATATCTCATGTT
ACAACaaaaacaataatttcaaaagaaaataatgtacTTCTTGTGAACAA
GAAAAAACATGCAACCCATTTTATTAGACCAAGAATATTTTCAGGTCATG
TGATGATAATGAAATACTTAAGAAGACCAAACTTAAAACTTAAGTAggga
aaaatctaaaattagtCAGGTTATTTGCTACCTGggaagtaaaaaaaact
ttacccAGCAGGAAGCTTATAATATCTTCGGATTAAAG

Coding sequence (CDS) from alignment at sc0000162:219764..221951

>TCONS_00013186 ID=TCONS_00013186|Name=TCONS_00013186|organism=Clytia hemisphaerica|type=CDS|length=1356bp|location=Sequence derived from alignment at sc0000162:219764..221951 (Clytia hemisphaerica)
TCAAACTCCTTTTGGGCTGGTTGATGGTATTGATGACTTCTGAGATTCAA
TTTGGGATCTTTTCAAgttttctttgataaaaaaagtcaaTAAGAAACCA
ACGGCATACAACCCTCCAACAATAGTGCACATCAAAAATAAGAGTTGCTC
ATCAATCAATTTTCCAAATACAAGTACAAACACAACTTCACACAAACTTC
CAAATATCATAATAAGTGCGGTTGAGAAAATTTCAGGTATAGGATAAGTC
AGTTCAGTGACATACGTTAATCCAACTGTCATGAACGGAACATTGCAAAA
GGATAATAATATGTAGGTCAAGAACAATGAAACTGTCGTTTTCAGATAAA
GTAAAACTATAGAAAATAATACCCAGCACACAATCTgcaaagaaaataac
aaaatggTCATTTTCCTGTAACATTTGTACTTATCCAGAATAGCTGCAAA
CATTAAAATTCCAAAGAAACTTGAAATATTTCCAAAGAATCCGATCCAAC
CAATAAAGGTTGAATTAGTTATGTGTGTGGACATCTGATTGAGACAAATC
AGAAACATATTGTTTAATCCAAATGATATgccaaaaacaaatgaaaaaat
aacaaagtttTTATCAGTGATGAGTGTTTTAAGTGATGTTTTGAATCCAG
GAGTTTCCACACATTGTTCAGGATGATTTGTATTATCTACAACTGCTTTG
GCATATGAGGGTGGTAATAAGGgcttttcttcaaaaaacaaATATGTAGA
TATCAAACACATCCCAAGAAAAGCAACATGAGATATATTCATTTCAAGAA
GTCCTTTATAAATTTTGTCCATATTTTCACTGTCTGGGACCATGTATGAA
GGTTGTAAATATCCTATGGAATTCCCAATTATATTACAGGCCAGTGCTAT
ACTAGTAGCTATGGCCTGTTCAGACTCTGGAAACCAAACTGATGCTACTG
TCGTAACTTGAAGGTAAGCACCAACCGAAAAAGCAGCAACAAATTGGCCA
GCTAATACAAACCATATGCCTTGTTGTCTAAATGTACCAGCAAGATGTAA
ACAAACACATATTGCATTCAAACTTGATCCAACTAGTAGTAATGTTCTGA
CACCAAATGAATCCATGAAATATGCAAAGGGTAGAGCAATGAAAACAAAT
ACAAATGGAAAACTATTTGAAGCCCAATCAGTAAGTTCAGGAGATATTCC
ATAATACTTCGATATAATTAAATTGATTGAGGTTATACAGGTAAATAACA
TTGAATTGGCCAATGAATTTATGGAGAAAACCAGCAATATCAACCATCGT
TTTTTGTAAACTCTTACATTCAGAGACAAGTGAGTAAGATTATCATAATC
TTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007367XLOC_007367Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013186-proteinTCONS_00013186-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013186-exon-sc0000162-1491911889:219764..221951TCONS_00013186-exon-sc0000162-1491911889:219764..221951Clytia hemisphaericaexon
TCONS_00013186-exon-sc0000162-1510915933:219764..221951TCONS_00013186-exon-sc0000162-1510915933:219764..221951Clytia hemisphaericaexon
TCONS_00013186-exon-sc0000162-1575043694:219764..221951TCONS_00013186-exon-sc0000162-1575043694:219764..221951Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000162supercontigsc0000162:219764..221951 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.878428	1.01394	0.690132	0.556036	1.20879	0.725951	0.668396	0.798363	0.181282	0.33682	0.363251	0.17909	0.357683	0.482894	0.356286	0.502517	0.376819	0.441402	0.457366	0.199417	0.571987	0.228269	0.452207	0.953055	0.538931	0.635585	0.589959	0.183639	0.397954	0.263544
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011701MFS
IPR020846MFS_dom
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016021 integral component of membrane
Blast
[Close]
BLAST of TCONS_00013186 vs. Swiss-Prot (Human)
Match: FLVC2 (Feline leukemia virus subgroup C receptor-related protein 2 OS=Homo sapiens GN=FLVCR2 PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.530e-31
Identity = 109/395 (27.59%), Postives = 200/395 (50.63%), Query Frame = 3 
Query:  381 VRVYKKRWLILLVFSINSLANSMLFTCITSINLIISKYYGISPELTDWASNSFPFVFVFIALPFAYFMDSFGVRTLLLVGSSLNAICVCLHLAGTFRQQGIWFVLAGQFVAAFSVGAYLQV-TTVASVWFPESEQAIATSIALACNIIGNSIGYLQPSYMVPDSENMDKI--YKGLLEMNISHVAFLGMCLISTYLFFEEKPLLPPSYAKAVVDNTNHPEQCVETPGFKTSLKTLITDKNXXXXXXXXXXXXXLNNMFLICLNQMST-HITNSTXXXXXXXXXXXXXXXXXLMFAAI-LDKYKCYRKMTILLFSLQIVCWVLFSIVLLYLKTTVSLFLTYILLSFCNVPFMTVGLTYVTELTYPIPEIFSTALIMIFGSLCEVVFVLVFGKLIDE 1550
            ++V ++RW ++LVFS  S+ NS  +    SIN I   +YG+S    DW S  +   ++ + LP A+ ++ FG+RT+ L GS+LN +   + L G+ +       + GQ + + +    L + + +ASVWF  +E + A S+A+  N +G +IG+L P  +VP+ E+ D++  +  ++   I  VA L   LI   + F+EKP  PPS A+++      P+       +  S+  L  + NFV+    +G++ G        LN+M   H               + +     + + I LD+ K Y++ T++++ + +V  V+++   L L     +F+T   + F    ++ +G  +  ELTYP  E  S+ L+ I   +  ++F +  G++ID 
Sbjct:   78 IKVSRRRWAVVLVFSCYSMCNSFQWIQYGSINNIFMHFYGVSAFAIDWLSMCYMLTYIPLLLPVAWLLEKFGLRTIALTGSALNCLGAWVKL-GSLKPHLFPVTVVGQLICSVAQVFILGMPSRIASVWFGANEVSTACSVAVFGNQLGIAIGFLVPPVLVPNIEDRDELAYHISIMFYIIGGVATL--LLILVIIVFKEKPKYPPSRAQSLSYALTSPDAS-----YLGSIARLFKNLNFVLLVITYGLNAGAFYALSTLLNRMVIWHYPGEEVNAGRIGLTIVIAGMLGAVISGIWLDRSKTYKETTLVVYIMTLVGMVVYTFT-LNLGHLWVVFITAGTMGFFMTGYLPLGFEFAVELTYPESEGISSGLLNISAQVFGIIFTISQGQIIDN 463
The following BLAST results are available for this feature:
BLAST of TCONS_00013186 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FLVC21.530e-3127.59Feline leukemia virus subgroup C receptor-related ... [more]
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