TCONS_00013170 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013170
Unique NameTCONS_00013170
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2549

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013170 ID=TCONS_00013170|Name=TCONS_00013170|organism=Clytia hemisphaerica|type=transcript|length=2549bp
ttttagcgtaaaataagagaaaaaaattgaaaaagagaaTGTCATCCTTT
TATATGGAGCTTTTGGACGAACCTCTGAGGTTTCCACCTGTTTCCAAAga
aatcaatgttttctttgatgaatGCAACAAACAAGTTTTCGCTGTCTCCA
CTGAAGGAGGTGCGACCAAGGTACAAGTCAAAGGGCTTGACAAATCATAC
GATACACGTTTCTCCCTTCAAGACAAAGGGAATGTCATTTCACTCAAATT
CTCACCTAACCACCGAATCCTGGCTATACAACGTTCCTCCAAATCCATCG
ATTTCATGAATTTCTACGAAGGAGCGAGTGTTGAAGAATACACACAATCA
TGTAAAGGTCGTTCCACACTCATTATTGGTTTCTGTTGGACCTCACCCAA
TGATATTGTTTTTGTCACAAACCAAGGAATCGAATTCTATCAAGCACAAC
CGGAGAAGAACTCCttgaaatttctcaaacatTATCATCATCCACACGTG
ACCAACTGGTATGTCTTTCTACCGGAAAGTTCCGTTCTTTTACTTTCCTC
TGGACTTCTTGGGAATTCTATTCATCCGTATCTCTTCAAACCTGGTACGA
TTATTCGCCTACCGAAATTTGACGTAGAAACCACCTCGTCCGCCAGAAGT
CCACCCTCTGGAAGTTTACTCGAAAGAGATGTTACGGTGGCCAACATTTA
CAACAACATCTACGTCGTTATTTTACGGAACCAACCGAAATCAATGAATT
CCGTCGGGGCGGAGATTGTGCTCTATCAGTTACAAAAAGACGCCCCTGCC
AAGAAAACAGCTGTTTTACGATTAGGGGCGGTGGGGCGTTTTGCTGTTAA
TGTGGTTGACAATTTAGTTGGTGTTCATCACCAAGCTTCCAAGACATCCA
TGATATTTGATATCAACCTTCCTGGTGATTTTGACGGACAAGTTACCTAT
TACCATCCTGTTTTATCGCCTCTTCCTATCGAACCATTCGTCATGCGTGT
CAGTAAAGATGGAGAGAGCTCTTCTTCAGGGGATAGTGGCGCAACACGTG
GTTTAGTTTGTGAATCATACTCAGCTAATTGGGTTGTCTTTCAACCAAAC
ATCATTATTGACGCCAAATTAGGCTGCTTATGGTTACTGAGTTGTAAATT
ACAATCTGTGACAAACATGATTGATGACAAAGGCCGATTGACTGATTTCT
TGTTATTGAGATCTGGAAGTAAACAAGTTCTCGTTTCTGTATTGGAGTTG
ATGTTAACCCCGGGTAAACAAAGCAGCATTAGCGCTATATCACAAATCTT
TGACAAGATCAATGCAGTTTACGCGGAATTTCTTGAGTTGAATACAACAG
GTACAACACAAGTTGGTGAACATTGGAAAGAAAATGAGTTGACGGGTCGT
TGGTTTCAAAAGAAGTCCGTGCTTCAACAAAAGGATATGTATAGTAGCGT
CTTCTTACCGTTCATTGAAAACGAGAGTATGGGGTATAAATTCATCGCTG
CCGTTCTCTTAGAGTATATCCGATCTTTGAACTTGTTTAAAATACCGGTG
GAGTATTACATGAATGAGTTTATCATTAATCTTTTGGTTCAAAAGAAATT
GTATTATCAGCTTCATCAATTCTTACAATATCATGTTTTGAGTGATTCGA
AACCGCTCGCTTGTTTGTTGTTGTCACTTGAAAGTGTGTACCCGTGTGCG
TACGATCTAGCCCTGGATATGATGAAGCGACTTGGGAATGACGCGGACAG
TACTATTATCGAGACTTTGTTACAAAAGAATCGAGTCATTTCTGCTTTGA
AGTTCATGCAAAGTAACGATACCATAGATTCAGCTGCTCCTCGTAAATTT
TTATCGGCTGCCGTAAAAGCTGACGATGACATGGTTTTTTATACTGTCTT
TACTTTCTTTCAACAACGCAActtgaaattgaagaagaacAGTCGGTTTG
TTGTTGGAGATCAGTGTGAAGTTTATGAGCGAATGTTCGAAAAGAGGTTT
GGACAGGTGAGTGGTGCAGGTAAAGAAAATGAAGGGTTTGTCGAGAAACT
GGCCAACCTCGATTTATAACATTCATGATTTGTTCATATTTTAAGTTTCT
TTACTTATTAGAAGCTGATTTTTGTCTTATATTGAATACTTTTATGGAAT
AGAATTTTCTGGGGATTGAATCAGATTGAATTTCGCGGTTGAACTCTTac
gcaaaaaaaataagatctcgTGAGTACTCTGGAGTACTTGGTATttcttt
tcttgctttttgCTGCATTACTGAGCATGTTGGCTGTTCTTAAACATATT
CTCATACTAACGCTTTTTTTCGGTGTTAATAAAACATTGAATAATgttaa
gaatttcttcaaattaaGTTTCGCGGATCATTTAATTCATCACTATTAAA
AAAAACCCTTCTCCTTGTTGGCCGAATTATTTTTATGCAGTTGGCTTAAC
TTAAGGGCTCNGCCAgccaaatctttttttaattttcacaactGTAGTGG
CAACTTATTGGGAAGCTAATACATTTAGCAGAAAAATCATGCTATCATG
Run BLAST on NCBI

protein sequence of TCONS_00013170-protein

>TCONS_00013170-protein ID=TCONS_00013170-protein|Name=TCONS_00013170-protein|organism=Clytia hemisphaerica|type=polypeptide|length=676bp
MSSFYMELLDEPLRFPPVSKEINVFFDECNKQVFAVSTEGGATKVQVKGL
DKSYDTRFSLQDKGNVISLKFSPNHRILAIQRSSKSIDFMNFYEGASVEE
YTQSCKGRSTLIIGFCWTSPNDIVFVTNQGIEFYQAQPEKNSLKFLKHYH
HPHVTNWYVFLPESSVLLLSSGLLGNSIHPYLFKPGTIIRLPKFDVETTS
SARSPPSGSLLERDVTVANIYNNIYVVILRNQPKSMNSVGAEIVLYQLQK
DAPAKKTAVLRLGAVGRFAVNVVDNLVGVHHQASKTSMIFDINLPGDFDG
QVTYYHPVLSPLPIEPFVMRVSKDGESSSSGDSGATRGLVCESYSANWVV
FQPNIIIDAKLGCLWLLSCKLQSVTNMIDDKGRLTDFLLLRSGSKQVLVS
VLELMLTPGKQSSISAISQIFDKINAVYAEFLELNTTGTTQVGEHWKENE
LTGRWFQKKSVLQQKDMYSSVFLPFIENESMGYKFIAAVLLEYIRSLNLF
KIPVEYYMNEFIINLLVQKKLYYQLHQFLQYHVLSDSKPLACLLLSLESV
YPCAYDLALDMMKRLGNDADSTIIETLLQKNRVISALKFMQSNDTIDSAA
PRKFLSAAVKADDDMVFYTVFTFFQQRNLKLKKNSRFVVGDQCEVYERMF
EKRFGQVSGAGKENEGFVEKLANLDL
Run BLAST on NCBI

transcript from alignment at sc0000162:451473..455081-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013170 ID=TCONS_00013170|Name=TCONS_00013170|organism=Clytia hemisphaerica|type=transcript|length=3609bp|location=Sequence derived from alignment at sc0000162:451473..455081- (Clytia hemisphaerica)
TTTTAGCGTAAAATAAGAGAAAAAAATTGAAAAAGAGAATGTCATCCTTT
TATATGGAGCTTTTGGACGAACCTCTGAGGTTTCCACCTGTTTCCAAAGA
AATCAATGTTTTCTTTGATGAATGCAACAAACAAGTTTTCGCTGTCTCCA
CTGAAGGTATTTTATTTAAACCCTGTTTAAATCTTGTTACGCCGAAAAAG
CATCTTTTTTAGATGCCACGAAACTCGTTGTTAATGAAACATCTTGGTTT
AAGGGCTCTGACCATAGTGAATTTTTTATAATTGCCATGTATAGAATATA
GTTTTCTGCTTGATGTAACCAACAAAACTATGGCATGTTTCACATTTTCT
TTTAGGCCAACTATTCCGGAATCTGAAAATTTAAAAATCGTAATGAATAA
AATTATTGAAGAAGAAAATAAAGTCTTTTGCTAAGACTTTTCAACTTTGA
GGACCTTACTTTCGGCGAAGAAAAAACATTTTAAAAAGATTTTTACGTTA
GATGGTGTATCTTTAACTAAACTAAAAAGAGATTTTCGGAAAATTTTGTC
TCGAAATCTTGAAAATAGTGCCTTTTGACCAATTTTTCATCCCAATTTTT
CGTAGAACAGTCATGATTTTTGATACATTAGTTAGGAAATTTTTCCGAAA
AATTTCAAATAGTTCAATTCCTTGCGGACAATTTAAAAAAGTTTGAAACA
AAAAGGTTAATTACCCATTAAAACTTAGCACTTTTTATAAAAGAAGGTGA
TGCAACATTTATTAACGTCTTTTTAAAGTTCATAACGTCATTTTTTGTAA
CTTTATTCTTAATTAAAGACAGGATAAATAACCAAACAACTTGTAAAAGC
AGTTTTTTAAGCGTGTCAAGGAACCCAAAACAAAAGTTTTATCTTCAAAT
CCCTTAACAAACTTTCTGACTATGATCAGAGCCCTTAAAAGCTTTTTGGT
GCATACGTTTTTTATTTCATTGTCAACTTCGTACTTAGCTGACAGAGTCT
TTCTTGTCAATGCGTGCACTATTTATCCTTAAAATCTTTTTTATACAGGT
TCAATCATCAAATGTCCGCCATTTTAAAAACTCGAAATATTTAAGTCATT
GGTCTCATATGCTTTGATGTTTTGAATATCTAAAGTCATCTAGCCTCACG
AGGTTAAGTAACTTCGGGTAATATTGTCAGGACAGTCTGGTACTTATTGA
CTACTTTTTATCATAGGAGGTGCGACCAAGGTACAAGTCAAAGGGCTTGA
CAAATCATACGATACACGTTTCTCCCTTCAAGACAAAGGGAATGTCATTT
CACTCAAATTCTCACCTAACCACCGAATCCTGGCTATACAACGTTCCTCC
AAATCCATCGATTTCATGAATTTCTACGAAGGAGCGAGTGTTGAAGAATA
CACACAATCATGTAAAGGTCGTTCCACACTCATTATTGGTTTCTGTTGGA
CCTCACCCAATGATATTGTTTTTGTCACAAACCAAGGAATCGAATTCTAT
CAAGCACAACCGGAGAAGAACTCCTTGAAATTTCTCAAACATTATCATCA
TCCACACGTGACCAACTGGTATGTCTTTCTACCGGAAAGTTCCGTTCTTT
TACTTTCCTCTGGACTTCTTGGGAATTCTATTCATCCGTATCTCTTCAAA
CCTGGTACGATTATTCGCCTACCGAAATTTGACGTAGAAACCACCTCGTC
CGCCAGAAGTCCACCCTCTGGAAGTTTACTCGAAAGAGATGTTACGGTGG
CCAACATTTACAACAACATCTACGTCGTTATTTTACGGAACCAACCGAAA
TCAATGAATTCCGTCGGGGCGGAGATTGTGCTCTATCAGTTACAAAAAGA
CGCCCCTGCCAAGAAAACAGCTGTTTTACGATTAGGGGCGGTGGGGCGTT
TTGCTGTTAATGTGGTTGACAATTTAGTTGGTGTTCATCACCAAGCTTCC
AAGACATCCATGATATTTGATATCAACCTTCCTGGTGATTTTGACGGACA
AGTTACCTATTACCATCCTGTTTTATCGCCTCTTCCTATCGAACCATTCG
TCATGCGTGTCAGTAAAGATGGAGAGAGCTCTTCTTCAGGGGATAGTGGC
GCAACACGTGGTTTAGTTTGTGAATCATACTCAGCTAATTGGGTTGTCTT
TCAACCAAACATCATTATTGACGCCAAATTAGGCTGCTTATGGTTACTGA
GTTGTAAATTACAATCTGTGACAAACATGATTGATGACAAAGGCCGATTG
ACTGATTTCTTGTTATTGAGATCTGGAAGTAAACAAGTTCTCGTTTCTGT
ATTGGAGTTGATGTTAACCCCGGGTAAACAAAGCAGCATTAGCGCTATAT
CACAAATCTTTGACAAGATCAATGCAGTTTACGCGGAATTTCTTGAGTTG
AATACAACAGGTACAACACAAGTTGGTGAACATTGGAAAGAAAATGAGTT
GACGGGTCGTTGGTTTCAAAAGAAGTCCGTGCTTCAACAAAAGGATATGT
ATAGTAGCGTCTTCTTACCGTTCATTGAAAACGAGAGTATGGGGTATAAA
TTCATCGCTGCCGTTCTCTTAGAGTATATCCGATCTTTGAACTTGTTTAA
AATACCGGTGGAGTATTACATGAATGAGTTTATCATTAATCTTTTGGTTC
AAAAGAAATTGTATTATCAGCTTCATCAATTCTTACAATATCATGTTTTG
AGTGATTCGAAACCGCTCGCTTGTTTGTTGTTGTCACTTGAAAGTGTGTA
CCCGTGTGCGTACGATCTAGCCCTGGATATGATGAAGCGACTTGGGAATG
ACGCGGACAGTACTATTATCGAGACTTTGTTACAAAAGAATCGAGTCATT
TCTGCTTTGAAGTTCATGCAAAGTAACGATACCATAGATTCAGCTGCTCC
TCGTAAATTTTTATCGGCTGCCGTAAAAGCTGACGATGACATGGTTTTTT
ATACTGTCTTTACTTTCTTTCAACAACGCAACTTGAAATTGAAGAAGAAC
AGTCGGTTTGTTGTTGGAGATCAGTGTGAAGTTTATGAGCGAATGTTCGA
AAAGAGGTTTGGACAGGTGAGTGGTGCAGGTAAAGAAAATGAAGGGTTTG
TCGAGAAACTGGCCAACCTCGATTTATAACATTCATGATTTGTTCATATT
TTAAGTTTCTTTACTTATTAGAAGCTGATTTTTGTCTTATATTGAATACT
TTTATGGAATAGAATTTTCTGGGGATTGAATCAGATTGAATTTCGCGGTT
GAACTCTTACGCAAAAAAAATAAGATCTCGTGAGTACTCTGGAGTACTTG
GTATTTCTTTTCTTGCTTTTTGCTGCATTACTGAGCATGTTGGCTGTTCT
TAAACATATTCTCATACTAACGCTTTTTTTCGGTGTTAATAAAACATTGA
ATAATGTTAAGAATTTCTTCAAATTAAGTTTCGCGGATCATTTAATTCAT
CACTATTAAAAAAAACCCTTCTCCTTGTTGGCCGAATTATTTTTATGCAG
TTGGCTTAACTTAAGGGCTCNGCCAGCCAAATCTTTTTTTAATTTTCACA
ACTGTAGTGGCAACTTATTGGGAAGCTAATACATTTAGCAGAAAAATCAT
GCTATCATG

Coding sequence (CDS) from alignment at sc0000162:451473..455081-

>TCONS_00013170 ID=TCONS_00013170|Name=TCONS_00013170|organism=Clytia hemisphaerica|type=CDS|length=4062bp|location=Sequence derived from alignment at sc0000162:451473..455081- (Clytia hemisphaerica)
GAGGTGCGACCAAGGTACAAGTCAAAGGGCTTGACAAATCATACGATACA
CGTTTCTCCCTTCAAGACAAAGGGAATGTCATTTCACTCAAATTCTCACC
TAACCACCGAATCCTGGCTATACAACGTTCCTCCAAATCCATCGATTTCA
TGAATTTCTACGAAGGAGCGAGTGTTGAAGAATACACACAATCATGTAAA
GGTCGTTCCACACTCATTATTGGTTTCTGTTGGACCTCACCCAATGATAT
TGTTTTTGTCACAAACCAAGGAATCGAATTCTATCAAGCACAACCGGAGA
AGAACTCCTTGAAATTTCTCAAACATTATCATCATCCACACGTGACCAAC
TGGTATGTCTTTCTACCGGAAAGTTCCGTTCTTTTACTTTCCTCTGGACT
TCTTGGGAATTCTATTCATCCGTATCTCTTCAAACCTGGTACGATTATTC
GCCTACCGAAATTTGACGTAGAAACCACCTCGTCCGCCAGAAGTCCACCC
TCTGGAAGTTTACTCGAAAGAGATGTTACGGTGGCCAACATTTACAACAA
CATCTACGTCGTTATTTTACGGAACCAACCGAAATCAATGAATTCCGTCG
GGGCGGAGATTGTGCTCTATCAGTTACAAAAAGACGCCCCTGCCAAGAAA
ACAGCTGTTTTACGATTAGGGGCGGTGGGGCGTTTTGCTGTTAATGTGGT
TGACAATTTAGTTGGTGTTCATCACCAAGCTTCCAAGACATCCATGATAT
TTGATATCAACCTTCCTGGTGATTTTGACGGACAAGTTACCTATTACCAT
CCTGTTTTATCGCCTCTTCCTATCGAACCATTCGTCATGCGTGTCAGTAA
AGATGGAGAGAGCTCTTCTTCAGGGGATAGTGGCGCAACACGTGGTTTAG
TTTGTGAATCATACTCAGCTAATTGGGTTGTCTTTCAACCAAACATCATT
ATTGACGCCAAATTAGGCTGCTTATGGTTACTGAGTTGTAAATTACAATC
TGTGACAAACATGATTGATGACAAAGGCCGATTGACTGATTTCTTGTTAT
TGAGATCTGGAAGTAAACAAGTTCTCGTTTCTGTATTGGAGTTGATGTTA
ACCCCGGGTAAACAAAGCAGCATTAGCGCTATATCACAAATCTTTGACAA
GATCAATGCAGTTTACGCGGAATTTCTTGAGTTGAATACAACAGGTACAA
CACAAGTTGGTGAACATTGGAAAGAAAATGAGTTGACGGGTCGTTGGTTT
CAAAAGAAGTCCGTGCTTCAACAAAAGGATATGTATAGTAGCGTCTTCTT
ACCGTTCATTGAAAACGAGAGTATGGGGTATAAATTCATCGCTGCCGTTC
TCTTAGAGTATATCCGATCTTTGAACTTGTTTAAAATACCGGTGGAGTAT
TACATGAATGAGTTTATCATTAATCTTTTGGTTCAAAAGAAATTGTATTA
TCAGCTTCATCAATTCTTACAATATCATGTTTTGAGTGATTCGAAACCGC
TCGCTTGTTTGTTGTTGTCACTTGAAAGTGTGTACCCGTGTGCGTACGAT
CTAGCCCTGGATATGATGAAGCGACTTGGGAATGACGCGGACAGTACTAT
TATCGAGACTTTGTTACAAAAGAATCGAGTCATTTCTGCTTTGAAGTTCA
TGCAAAGTAACGATACCATAGATTCAGCTGCTCCTCGTAAATTTTTATCG
GCTGCCGTAAAAGCTGACGATGACATGGTTTTTTATACTGTCTTTACTTT
CTTTCAACAACGCAACTTGAAATTGAAGAAGAACAGTCGGTTTGTTGTTG
GAGATCAGTGTGAAGTTTATGAGCGAATGTTCGAAAAGAGGTTTGGACAG
GTGAGTGGTGCAGGTAAAGAAAATGAAGGGTTTGTCGAGAAACTGGCCAA
CCTCGATTTATAAATGTCATCCTTTTATATGGAGCTTTTGGACGAACCTC
TGAGGTTTCCACCTGTTTCCAAAGAAATCAATGTTTTCTTTGATGAATGC
AACAAACAAGTTTTCGCTGTCTCCACTGAAGGAGGTGCGACCAAGGTACA
AGTCAAAGGGCTTGACAAATCATACGATACACGTTTCTCCCTTCAAGACA
AAGGGAATGTCATTTCACTCAAATTCTCACCTAACCACCGAATCCTGGCT
ATACAACGTTCCTCCAAATCCATCGATTTCATGAATTTCTACGAAGGAGC
GAGTGTTGAAGAATACACACAATCATGTAAAGGTCGTTCCACACTCATTA
TTGGTTTCTGTTGGACCTCACCCAATGATATTGTTTTTGTCACAAACCAA
GGAATCGAATTCTATCAAGCACAACCGGAGAAGAACTCCTTGAAATTTCT
CAAACATTATCATCATCCACACGTGACCAACTGGTATGTCTTTCTACCGG
AAAGTTCCGTTCTTTTACTTTCCTCTGGACTTCTTGGGAATTCTATTCAT
CCGTATCTCTTCAAACCTGGTACGATTATTCGCCTACCGAAATTTGACGT
AGAAACCACCTCGTCCGCCAGAAGTCCACCCTCTGGAAGTTTACTCGAAA
GAGATGTTACGGTGGCCAACATTTACAACAACATCTACGTCGTTATTTTA
CGGAACCAACCGAAATCAATGAATTCCGTCGGGGCGGAGATTGTGCTCTA
TCAGTTACAAAAAGACGCCCCTGCCAAGAAAACAGCTGTTTTACGATTAG
GGGCGGTGGGGCGTTTTGCTGTTAATGTGGTTGACAATTTAGTTGGTGTT
CATCACCAAGCTTCCAAGACATCCATGATATTTGATATCAACCTTCCTGG
TGATTTTGACGGACAAGTTACCTATTACCATCCTGTTTTATCGCCTCTTC
CTATCGAACCATTCGTCATGCGTGTCAGTAAAGATGGAGAGAGCTCTTCT
TCAGGGGATAGTGGCGCAACACGTGGTTTAGTTTGTGAATCATACTCAGC
TAATTGGGTTGTCTTTCAACCAAACATCATTATTGACGCCAAATTAGGCT
GCTTATGGTTACTGAGTTGTAAATTACAATCTGTGACAAACATGATTGAT
GACAAAGGCCGATTGACTGATTTCTTGTTATTGAGATCTGGAAGTAAACA
AGTTCTCGTTTCTGTATTGGAGTTGATGTTAACCCCGGGTAAACAAAGCA
GCATTAGCGCTATATCACAAATCTTTGACAAGATCAATGCAGTTTACGCG
GAATTTCTTGAGTTGAATACAACAGGTACAACACAAGTTGGTGAACATTG
GAAAGAAAATGAGTTGACGGGTCGTTGGTTTCAAAAGAAGTCCGTGCTTC
AACAAAAGGATATGTATAGTAGCGTCTTCTTACCGTTCATTGAAAACGAG
AGTATGGGGTATAAATTCATCGCTGCCGTTCTCTTAGAGTATATCCGATC
TTTGAACTTGTTTAAAATACCGGTGGAGTATTACATGAATGAGTTTATCA
TTAATCTTTTGGTTCAAAAGAAATTGTATTATCAGCTTCATCAATTCTTA
CAATATCATGTTTTGAGTGATTCGAAACCGCTCGCTTGTTTGTTGTTGTC
ACTTGAAAGTGTGTACCCGTGTGCGTACGATCTAGCCCTGGATATGATGA
AGCGACTTGGGAATGACGCGGACAGTACTATTATCGAGACTTTGTTACAA
AAGAATCGAGTCATTTCTGCTTTGAAGTTCATGCAAAGTAACGATACCAT
AGATTCAGCTGCTCCTCGTAAATTTTTATCGGCTGCCGTAAAAGCTGACG
ATGACATGGTTTTTTATACTGTCTTTACTTTCTTTCAACAACGCAACTTG
AAATTGAAGAAGAACAGTCGGTTTGTTGTTGGAGATCAGTGTGAAGTTTA
TGAGCGAATGTTCGAAAAGAGGTTTGGACAGGTGAGTGGTGCAGGTAAAG
AAAATGAAGGGTTTGTCGAGAAACTGGCCAACCTCGATTTATAAATGTCA
TCCTTTTATATGGAGCTTTTGGACGAACCTCTGAGGTTTCCACCTGTTTC
CAAAGAAATCAATGTTTTCTTTGATGAATGCAACAAACAAGTTTTCGCTG
TCTCCACTGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007354XLOC_007354Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013170-proteinTCONS_00013170-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013170-exon-sc0000162-1575043694:454926..455081TCONS_00013170-exon-sc0000162-1575043694:454926..455081Clytia hemisphaericaexon
TCONS_00013170-exon-sc0000162-1575043694:451473..453865TCONS_00013170-exon-sc0000162-1575043694:451473..453865Clytia hemisphaericaexon
TCONS_00013170-exon-sc0000162-1510915933:454926..455081TCONS_00013170-exon-sc0000162-1510915933:454926..455081Clytia hemisphaericaexon
TCONS_00013170-exon-sc0000162-1510915933:451473..453865TCONS_00013170-exon-sc0000162-1510915933:451473..453865Clytia hemisphaericaexon
TCONS_00013170-exon-sc0000162-1491911889:454926..455081TCONS_00013170-exon-sc0000162-1491911889:454926..455081Clytia hemisphaericaexon
TCONS_00013170-exon-sc0000162-1491911889:451473..453865TCONS_00013170-exon-sc0000162-1491911889:451473..453865Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000162supercontigsc0000162:451473..455081 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
25.1831	24.3731	18.6479	18.1827	10.7751	7.52904	9.47331	9.83597	6.01761	8.03932	5.80629	3.9178	6.36262	5.79085	8.00455	9.3468	8.01267	8.25939	6.2856	6.44251	7.5136	7.72212	18.3399	17.5373	7.99257	8.99275	9.25125	7.09255	13.8831	16.4113
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR009755Mic1
IPR015943WD40/YVTN_repeat-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00013170 vs. Swiss-Prot (Human)
Match: MIC1 (Uncharacterized protein C18orf8 OS=Homo sapiens GN=C18orf8 PE=1 SV=2)

HSP 1 Score: 568.155 bits (1463), Expect = 0.000e+0
Identity = 308/653 (47.17%), Postives = 441/653 (67.53%), Query Frame = 3 
Query:   48 FYMELLDEPLRFPPVSKEINVFFDECNKQVFAVSTEGGATKVQVKGLDKSYDTRFSLQDKGNVISLKFSPNHRILAIQRSSKSIDFMNFYEGASVEEYTQSCKGRSTLIIGFCWTSPNDIVFVTNQGIEFYQAQPEKNSLKFLKHYHHPHVTNWYVFLPEXXXXXXXXXXXXXXIHPYLFKPGTIIRLPKFDVETTSSARSPPSGSLLERDVTVANIYNNIYVVILRNQPKSMNSVGAEIVLYQLQKDAPAKKTAVLRLGAVGRFAVNVVDNLVGVHHQASKTSMIFDINLPGDFDGQVTYYHPVLSPLPIEPFVMRVXXXXXXXXXXXXXATRGLVCESYSANWVVFQPNIIIDAKLGCLWLLSCKLQSVTNMIDDKGRLTDFLLLRSGSKQVLVSVLELMLTPGKQSSISAISQIFDKINAVYAEFLELNTTGTTQV-GEHWKENELTGRWFQKKSVLQQKDMYSSVFLPFIENESMGYKFIAAVLLEYIRSLNLFKIPVEYYMNEFIINLLVQKKLYYQLHQFLQYHVLSDSKPLACLLLSLESVYPCAYDLALDMMKRLGNDADSTIIETLLQKNRVISALKFMQSNDTIDSAAPRKFLSAAVKADDDMVFYTVFTFFQQRNLKLKKNSRFVVGDQCEVYERMFEKRFG 2003
            +Y+EL + P++F   +    VFFDE NKQVFAV + GGAT V VKG D      F + DKG V  +KFS  ++ILA+QR+SK++DF NF    S  EYTQ CK ++  I+GFCWTS  +IVF+T+QGIEFYQ  PEK SLK LK   H    NWY++ PES+V+LLS+ +L N + P+ F+ GT+ +LPKF++E  ++ +S    SL ERD+ +A IY  +YV+ LR+  ++ NS GAE+VLY L ++   KK  +L+L   G+FA+NVVDNLV VHHQ ++TS+IFDI L G+FDG VT++HPVL    I+P+ + ++     +      +   + C+ YS++W+VFQP+III A  G LW L  KL+ + N++ DKGRL DFLL R   K V++SV   ML+   ++S+  I+ +FDK+N  Y ++L+   +    V     + + L  R  + ++VL Q D+Y+ V   F+E + M +KF+ AVL+EYIRSLN F+I V++Y++E +I  LVQ  L+Y LHQFLQYHVLSDSKPLACLLLSLES YP A+ L+LDM+KRL   A+  I+E LL K++V++AL+F++     D+ + RKFL AA + +D+M+FYT+F FF+QRN +L+ +  F  G+ CE +   F++ FG
Sbjct:    6 YYLELCERPVQFEKANPVNCVFFDEANKQVFAVRS-GGATGVVVKGPDDRNPISFRMDDKGEVKCIKFSLENKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSSTEIVFITDQGIEFYQVLPEKRSLKLLKS--HNLNVNWYMYCPESAVILLSTTVLENVLQPFHFRAGTMSKLPKFEIELPAAPKST-KPSLSERDIAMATIYGQLYVLFLRHHSRTSNSTGAEVVLYHLPREGACKKMHILKLNRTGKFALNVVDNLVVVHHQDTETSVIFDIKLRGEFDGSVTFHHPVLPARSIQPYQIPITGPAAVT------SQSPVPCKLYSSSWIVFQPDIIISASQGYLWNLQVKLEPIVNLLPDKGRLMDFLLQRKECKMVILSVCSQMLSESDRASLPVIATVFDKLNHEYKKYLDAEQSYAMAVEAGQSRSSPLLKRPVRTQAVLDQSDVYTHVLSAFVEKKEMPHKFVIAVLMEYIRSLNQFQIAVQHYLHELVIKTLVQHNLFYMLHQFLQYHVLSDSKPLACLLLSLESFYPPAHQLSLDMLKRLST-ANDEIVEVLLSKHQVLAALRFIRGIGGHDNISARKFLDAAKQTEDNMLFYTIFRFFEQRNQRLRGSPNFTPGEHCEEHVAFFKQIFG 647
The following BLAST results are available for this feature:
BLAST of TCONS_00013170 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MIC10.000e+047.17Uncharacterized protein C18orf8 OS=Homo sapiens GN... [more]
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