TCONS_00013170-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00013170-protein
Unique NameTCONS_00013170-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length676

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00013170-protein ID=TCONS_00013170-protein|Name=TCONS_00013170-protein|organism=Clytia hemisphaerica|type=polypeptide|length=676bp
MSSFYMELLDEPLRFPPVSKEINVFFDECNKQVFAVSTEGGATKVQVKGL
DKSYDTRFSLQDKGNVISLKFSPNHRILAIQRSSKSIDFMNFYEGASVEE
YTQSCKGRSTLIIGFCWTSPNDIVFVTNQGIEFYQAQPEKNSLKFLKHYH
HPHVTNWYVFLPESSVLLLSSGLLGNSIHPYLFKPGTIIRLPKFDVETTS
SARSPPSGSLLERDVTVANIYNNIYVVILRNQPKSMNSVGAEIVLYQLQK
DAPAKKTAVLRLGAVGRFAVNVVDNLVGVHHQASKTSMIFDINLPGDFDG
QVTYYHPVLSPLPIEPFVMRVSKDGESSSSGDSGATRGLVCESYSANWVV
FQPNIIIDAKLGCLWLLSCKLQSVTNMIDDKGRLTDFLLLRSGSKQVLVS
VLELMLTPGKQSSISAISQIFDKINAVYAEFLELNTTGTTQVGEHWKENE
LTGRWFQKKSVLQQKDMYSSVFLPFIENESMGYKFIAAVLLEYIRSLNLF
KIPVEYYMNEFIINLLVQKKLYYQLHQFLQYHVLSDSKPLACLLLSLESV
YPCAYDLALDMMKRLGNDADSTIIETLLQKNRVISALKFMQSNDTIDSAA
PRKFLSAAVKADDDMVFYTVFTFFQQRNLKLKKNSRFVVGDQCEVYERMF
EKRFGQVSGAGKENEGFVEKLANLDL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_007354XLOC_007354Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00013170TCONS_00013170Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009755Mic1
IPR015943WD40/YVTN_repeat-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009755Colon cancer-associated Mic1-likePFAMPF07035Mic1coord: 484..637
e-value: 1.9E-57
score: 193.3
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 17..400
e-value: 1.4E-6
score: 27.0
NoneNo IPR availableSUPERFAMILY69322Tricorn protease domain 2coord: 26..193

Blast
[Close]
BLAST of TCONS_00013170-protein vs. Swiss-Prot (Human)
Match: MIC1 (Uncharacterized protein C18orf8 OS=Homo sapiens GN=C18orf8 PE=1 SV=2)

HSP 1 Score: 589.726 bits (1519), Expect = 0.000e+0
Identity = 310/653 (47.47%), Postives = 443/653 (67.84%), Query Frame = 0 
Query:    4 FYMELLDEPLRFPPVSKEINVFFDECNKQVFAVSTEGGATKVQVKGLDKSYDTRFSLQDKGNVISLKFSPNHRILAIQRSSKSIDFMNFYEGASVEEYTQSCKGRSTLIIGFCWTSPNDIVFVTNQGIEFYQAQPEKNSLKFLKHYHHPHVTNWYVFLPESSVLLLSSGLLGNSIHPYLFKPGTIIRLPKFDVETTSSARSPPSGSLLERDVTVANIYNNIYVVILRNQPKSMNSVGAEIVLYQLQKDAPAKKTAVLRLGAVGRFAVNVVDNLVGVHHQASKTSMIFDINLPGDFDGQVTYYHPVLSPLPIEPFVMRVSKDGESSSSGDSGATRGLVCESYSANWVVFQPNIIIDAKLGCLWLLSCKLQSVTNMIDDKGRLTDFLLLRSGSKQVLVSVLELMLTPGKQSSISAISQIFDKINAVYAEFLELNTTGTTQV-GEHWKENELTGRWFQKKSVLQQKDMYSSVFLPFIENESMGYKFIAAVLLEYIRSLNLFKIPVEYYMNEFIINLLVQKKLYYQLHQFLQYHVLSDSKPLACLLLSLESVYPCAYDLALDMMKRLGNDADSTIIETLLQKNRVISALKFMQSNDTIDSAAPRKFLSAAVKADDDMVFYTVFTFFQQRNLKLKKNSRFVVGDQCEVYERMFEKRFG 655
            +Y+EL + P++F   +    VFFDE NKQVFAV + GGAT V VKG D      F + DKG V  +KFS  ++ILA+QR+SK++DF NF    S  EYTQ CK ++  I+GFCWTS  +IVF+T+QGIEFYQ  PEK SLK LK   H    NWY++ PES+V+LLS+ +L N + P+ F+ GT+ +LPKF++E  ++ +S    SL ERD+ +A IY  +YV+ LR+  ++ NS GAE+VLY L ++   KK  +L+L   G+FA+NVVDNLV VHHQ ++TS+IFDI L G+FDG VT++HPVL    I+P+ + ++  G ++ +  S       C+ YS++W+VFQP+III A  G LW L  KL+ + N++ DKGRL DFLL R   K V++SV   ML+   ++S+  I+ +FDK+N  Y ++L+   +    V     + + L  R  + ++VL Q D+Y+ V   F+E + M +KF+ AVL+EYIRSLN F+I V++Y++E +I  LVQ  L+Y LHQFLQYHVLSDSKPLACLLLSLES YP A+ L+LDM+KRL   A+  I+E LL K++V++AL+F++     D+ + RKFL AA + +D+M+FYT+F FF+QRN +L+ +  F  G+ CE +   F++ FG
Sbjct:    6 YYLELCERPVQFEKANPVNCVFFDEANKQVFAVRS-GGATGVVVKGPDDRNPISFRMDDKGEVKCIKFSLENKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSSTEIVFITDQGIEFYQVLPEKRSLKLLKS--HNLNVNWYMYCPESAVILLSTTVLENVLQPFHFRAGTMSKLPKFEIELPAAPKST-KPSLSERDIAMATIYGQLYVLFLRHHSRTSNSTGAEVVLYHLPREGACKKMHILKLNRTGKFALNVVDNLVVVHHQDTETSVIFDIKLRGEFDGSVTFHHPVLPARSIQPYQIPIT--GPAAVTSQSPVP----CKLYSSSWIVFQPDIIISASQGYLWNLQVKLEPIVNLLPDKGRLMDFLLQRKECKMVILSVCSQMLSESDRASLPVIATVFDKLNHEYKKYLDAEQSYAMAVEAGQSRSSPLLKRPVRTQAVLDQSDVYTHVLSAFVEKKEMPHKFVIAVLMEYIRSLNQFQIAVQHYLHELVIKTLVQHNLFYMLHQFLQYHVLSDSKPLACLLLSLESFYPPAHQLSLDMLKRLST-ANDEIVEVLLSKHQVLAALRFIRGIGGHDNISARKFLDAAKQTEDNMLFYTIFRFFEQRNQRLRGSPNFTPGEHCEEHVAFFKQIFG 647
The following BLAST results are available for this feature:
BLAST of TCONS_00013170-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MIC10.000e+047.47Uncharacterized protein C18orf8 OS=Homo sapiens GN... [more]
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