TCONS_00013166 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013166
Unique NameTCONS_00013166
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1445

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013166 ID=TCONS_00013166|Name=TCONS_00013166|organism=Clytia hemisphaerica|type=transcript|length=1445bp
TAAGTTCTAAATGTTGTGGTTCATTATGTTATTTCGGTACAATGGACAAG
ATATCGGCTGGAACCATATCGTACAAGTATATGAATGGGATCTCAACGAA
AAGAGTCAATCATATGGTCTTCGAGTCCTTAACAAATTGACAGAGGATCA
TATCAAACTTACCCCACGACTAAGAATGAAAGTAAAGCTTGCAGCTCAgG
TCCTCAGTGCTCACATGGCAAATGCCCTCAAATTGCAAAACGAATTTTAC
ACAGAAGGTACacgaaatttcatcaaaatatttgatcGACTCTTTGATTG
TTTGAATGGTCAATCCTATGACGACTATGGCAAACCAGATAGAGCACCTT
ACAGAAAAGTGGATGATGCAAGATTTACGTTCCTAAACAAGGTTCTCACC
TATTTGGATGACTGGGAGAAGGAAGCAAAATCACTGACACAATTGACAGT
AGAAGAACAAGCGAAGCGATGTTTGAGCAAGCAGACTGTTTTTGGGTGGC
GAATGACAATACATACGTTTATGGATTTGACGAAAGAGCTACTAAATGAA
GGAGCACGTTTCGTACTCAGTGAAAAGTTTTCCCAAGACCCATTGGAAGA
GCACTTCGGACGCCAGAGAGCTGCAGGAGGAGCAAACGAAAACCCAACAT
ACCTTCAATTTGAGAAACAAGAAGTTTCATTGAACTTAATGAGCTCTGAA
CTGATAAACGAGTTACAAGGTAGTAACGTTTCCAGAAAAGACTCCACACC
TCTCGATATTAATGACCAACGCACTCTTCCAAGAAAAGAGATTGTACGAA
AAAAAGCTCAGAAAGACCCTAAATGAACTTTTAAATCGATTTTAGTTTTA
GTATTTAATTTCTACATTTTTGTCTAGATATTTATAAAGAAACACGAGAA
TCAATTTTTTAACAGGGTATGTGAATAAAAGCTGGGAGCAGCAACAATTT
GTAAAAAACGtctattttttcacttttgagaTGTTCCTCAAGTGTTTCTG
ATTTACTAAAATTTTCTTGATAATTTGGGTAATTTTGGACAATGAGCAGA
GCTGATTATTAATCAAGTCTGTATTTTTAGGATAAAGATATCTTACAGCT
TCACTTCTTGTATATATTGTCATTTATCTCATGCACATTTTATTTCCCAC
CGGACTAACTATATCattcatttttcataaatttttactACCCTTTTATA
CGTACATCAATTTTTATTGCATCAATTATCTcaacttttttaatattttt
cagctttttataCATACATCAATTTTTATTGCACCAAGTATCtcaatatt
tttaacatttttcagcttttttaaatgaagacaaTTTCTAAATAggttca
ttttatttgtaaatttgACAAGTGCAGTAGCACGAAACTCGGAGTAgtgt
actttttttattttgtgatcaAAGATAgatatattttaatatttt
Run BLAST on NCBI

protein sequence of TCONS_00013166-protein

>TCONS_00013166-protein ID=TCONS_00013166-protein|Name=TCONS_00013166-protein|organism=Clytia hemisphaerica|type=polypeptide|length=271bp
MLWFIMLFRYNGQDIGWNHIVQVYEWDLNEKSQSYGLRVLNKLTEDHIKL
TPRLRMKVKLAAQVLSAHMANALKLQNEFYTEGTRNFIKIFDRLFDCLNG
QSYDDYGKPDRAPYRKVDDARFTFLNKVLTYLDDWEKEAKSLTQLTVEEQ
AKRCLSKQTVFGWRMTIHTFMDLTKELLNEGARFVLSEKFSQDPLEEHFG
RQRAAGGANENPTYLQFEKQEVSLNLMSSELINELQGSNVSRKDSTPLDI
NDQRTLPRKEIVRKKAQKDPK
Run BLAST on NCBI

transcript from alignment at sc0000162:392143..394102-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013166 ID=TCONS_00013166|Name=TCONS_00013166|organism=Clytia hemisphaerica|type=transcript|length=1960bp|location=Sequence derived from alignment at sc0000162:392143..394102- (Clytia hemisphaerica)
TAAGTTCTAAATGTTGTGGTTCATTATGTTATTTCGGTACAATGGACAAG
ATATCGGCTGGAACCATATCGTACAAGTATATGAATGGGATCTCAACGAA
AAGAGTCAATCATATGGTCTTCGAGTCCTTAACAAATTGACAGAGGATCA
TATCAAACTTACCCCACGACTAAGAATGAAAGTAAAGCTTGCAGCTCAGG
TATTAAAAGATTTTTTCCATATCTGTTGGGGGAACCTCACAAGGGGGGGA
GAGAAAATTTTCTGGGTGCGCCAAACCTGGAGGAAATTTTAGAATGTTTC
GTTATTTAAATTGAAATCATAAACACATTTTCAGGTCCTCAGTGCTCACA
TGGCAAATGCCCTCAAATTGCAAAACGAATTTTACACAGAAGGTACACGA
AATTTCATCAAAATATTTGATCGACTCTTTGATTGTTTGAATGGTCAATC
CTATGACGACTATGGCAAACCAGATAGAGCACCTTACAGAAAAGTGGATG
ATGCAAGATTTACGGTAAAAGTTGATTTATTCCGTTTTTGCTTTTGCCTT
ATAGAGATTTTTCCACCATTCCAGTCATTCTAGCCTAGTCATTCCAATAA
CTTGCTGCTGTGTACTAGAATAATTCTTAAGTTCTTTAAAATATTAATTA
TCATATTCTATTTCAGTTCCTAAACAAGGTTCTCACCTATTTGGATGACT
GGGAGAAGGAAGCAAAATCACTGACACAATTGACAGTAGAAGAACAAGCG
AAGCGATGTTTGAGCAAGCAGACTGTTTTTGGGTGGCGAATGACAAGTAA
GTTTTTCATGTTTCTTTTAGTTGTTAATTTGCTCAATCGATTCACTTCTA
AAGGTACTGAGTGAAGAGACATTTTCTTAAAAGCTGTATGGTAGATTAAA
CCCTTCATAAAAGCAAGATCATTGGAAAAAAATTCCTTAAATTAAGCTCG
CGACCCAAAGCACAAATTCTCTCTGGATGAACCCATTCGAAGTGATTTAC
ATGTTTTGTATATTTCTTGTTCAGTACATACGTTTATGGATTTGACGAAA
GAGCTACTAAATGAAGGAGCACGTTTCGTACTCAGTGAAAAGTTTTCCCA
AGACCCATTGGAAGAGCACTTCGGACGCCAGAGAGCTGCAGGAGGAGCAA
ACGAAAACCCAACATACCTTCAATTTGAGAAACAAGAAGTTTCATTGAAC
TTAATGAGCTCTGAACTGATAAACGAGTTACAAGGTAGTAACGTTTCCAG
AAAAGACTCCACACCTCTCGATATTAATGACCAACGCACTCTTCCAAGAA
AAGAGATTGTACGAAAAAAAGCTCAGAAAGACCCTAAATGAACTTTTAAA
TCGATTTTAGTTTTAGTATTTAATTTCTACATTTTTGTCTAGATATTTAT
AAAGAAACACGAGAATCAATTTTTTAACAGGGTATGTGAATAAAAGCTGG
GAGCAGCAACAATTTGTAAAAAACGTCTATTTTTTCACTTTTGAGATGTT
CCTCAAGTGTTTCTGATTTACTAAAATTTTCTTGATAATTTGGGTAATTT
TGGACAATGAGCAGAGCTGATTATTAATCAAGTCTGTATTTTTAGGATAA
AGATATCTTACAGCTTCACTTCTTGTATATATTGTCATTTATCTCATGCA
CATTTTATTTCCCACCGGACTAACTATATCATTCATTTTTCATAAATTTT
TACTACCCTTTTATACGTACATCAATTTTTATTGCATCAATTATCTCAAC
TTTTTTAATATTTTTCAGCTTTTTATACATACATCAATTTTTATTGCACC
AAGTATCTCAATATTTTTAACATTTTTCAGCTTTTTTAAATGAAGACAAT
TTCTAAATAGGTTCATTTTATTTGTAAATTTGACAAGTGCAGTAGCACGA
AACTCGGAGTAGTGTACTTTTTTTATTTTGTGATCAAAGATAGATATATT
TTAATATTTT

Coding sequence (CDS) from alignment at sc0000162:392143..394102-

>TCONS_00013166 ID=TCONS_00013166|Name=TCONS_00013166|organism=Clytia hemisphaerica|type=CDS|length=3264bp|location=Sequence derived from alignment at sc0000162:392143..394102- (Clytia hemisphaerica)
TACATACGTTTATGGATTTGACGAAAGAGCTACTAAATGAAGGAGCACGT
TTCGTACTCAGTGAAAAGTTTTCCCAAGACCCATTGGAAGAGCACTTCGG
ACGCCAGAGAGCTGCAGGAGGAGCAAACGAAAACCCAACATACCTTCAAT
TTGAGAAACAAGAAGTTTCATTGAACTTAATGAGCTCTGAACTGATAAAC
GAGTTACAAGGTAGTAACGTTTCCAGAAAAGACTCCACACCTCTCGATAT
TAATGACCAACGCACTCTTCCAAGAAAAGAGATTGTACGAAAAAAAGCTC
AGAAAGACCCTAAATGATTCCTAAACAAGGTTCTCACCTATTTGGATGAC
TGGGAGAAGGAAGCAAAATCACTGACACAATTGACAGTAGAAGAACAAGC
GAAGCGATGTTTGAGCAAGCAGACTGTTTTTGGGTGGCGAATGACAAGTC
CTCAGTGCTCACATGGCAAATGCCCTCAAATTGCAAAACGAATTTTACAC
AGAAGGTACACGAAATTTCATCAAAATATTTGATCGACTCTTTGATTGTT
TGAATGGTCAATCCTATGACGACTATGGCAAACCAGATAGAGCACCTTAC
AGAAAAGTGGATGATGCAAGATTTACGATGTTGTGGTTCATTATGTTATT
TCGGTACAATGGACAAGATATCGGCTGGAACCATATCGTACAAGTATATG
AATGGGATCTCAACGAAAAGAGTCAATCATATGGTCTTCGAGTCCTTAAC
AAATTGACAGAGGATCATATCAAACTTACCCCACGACTAAGAATGAAAGT
AAAGCTTGCAGCTCAGTACATACGTTTATGGATTTGACGAAAGAGCTACT
AAATGAAGGAGCACGTTTCGTACTCAGTGAAAAGTTTTCCCAAGACCCAT
TGGAAGAGCACTTCGGACGCCAGAGAGCTGCAGGAGGAGCAAACGAAAAC
CCAACATACCTTCAATTTGAGAAACAAGAAGTTTCATTGAACTTAATGAG
CTCTGAACTGATAAACGAGTTACAAGGTAGTAACGTTTCCAGAAAAGACT
CCACACCTCTCGATATTAATGACCAACGCACTCTTCCAAGAAAAGAGATT
GTACGAAAAAAAGCTCAGAAAGACCCTAAATGATTCCTAAACAAGGTTCT
CACCTATTTGGATGACTGGGAGAAGGAAGCAAAATCACTGACACAATTGA
CAGTAGAAGAACAAGCGAAGCGATGTTTGAGCAAGCAGACTGTTTTTGGG
TGGCGAATGACAAGTCCTCAGTGCTCACATGGCAAATGCCCTCAAATTGC
AAAACGAATTTTACACAGAAGGTACACGAAATTTCATCAAAATATTTGAT
CGACTCTTTGATTGTTTGAATGGTCAATCCTATGACGACTATGGCAAACC
AGATAGAGCACCTTACAGAAAAGTGGATGATGCAAGATTTACGATGTTGT
GGTTCATTATGTTATTTCGGTACAATGGACAAGATATCGGCTGGAACCAT
ATCGTACAAGTATATGAATGGGATCTCAACGAAAAGAGTCAATCATATGG
TCTTCGAGTCCTTAACAAATTGACAGAGGATCATATCAAACTTACCCCAC
GACTAAGAATGAAAGTAAAGCTTGCAGCTCAGTACATACGTTTATGGATT
TGACGAAAGAGCTACTAAATGAAGGAGCACGTTTCGTACTCAGTGAAAAG
TTTTCCCAAGACCCATTGGAAGAGCACTTCGGACGCCAGAGAGCTGCAGG
AGGAGCAAACGAAAACCCAACATACCTTCAATTTGAGAAACAAGAAGTTT
CATTGAACTTAATGAGCTCTGAACTGATAAACGAGTTACAAGGTAGTAAC
GTTTCCAGAAAAGACTCCACACCTCTCGATATTAATGACCAACGCACTCT
TCCAAGAAAAGAGATTGTACGAAAAAAAGCTCAGAAAGACCCTAAATGAT
TCCTAAACAAGGTTCTCACCTATTTGGATGACTGGGAGAAGGAAGCAAAA
TCACTGACACAATTGACAGTAGAAGAACAAGCGAAGCGATGTTTGAGCAA
GCAGACTGTTTTTGGGTGGCGAATGACAAGTCCTCAGTGCTCACATGGCA
AATGCCCTCAAATTGCAAAACGAATTTTACACAGAAGGTACACGAAATTT
CATCAAAATATTTGATCGACTCTTTGATTGTTTGAATGGTCAATCCTATG
ACGACTATGGCAAACCAGATAGAGCACCTTACAGAAAAGTGGATGATGCA
AGATTTACGATGTTGTGGTTCATTATGTTATTTCGGTACAATGGACAAGA
TATCGGCTGGAACCATATCGTACAAGTATATGAATGGGATCTCAACGAAA
AGAGTCAATCATATGGTCTTCGAGTCCTTAACAAATTGACAGAGGATCAT
ATCAAACTTACCCCACGACTAAGAATGAAAGTAAAGCTTGCAGCTCAGTA
CATACGTTTATGGATTTGACGAAAGAGCTACTAAATGAAGGAGCACGTTT
CGTACTCAGTGAAAAGTTTTCCCAAGACCCATTGGAAGAGCACTTCGGAC
GCCAGAGAGCTGCAGGAGGAGCAAACGAAAACCCAACATACCTTCAATTT
GAGAAACAAGAAGTTTCATTGAACTTAATGAGCTCTGAACTGATAAACGA
GTTACAAGGTAGTAACGTTTCCAGAAAAGACTCCACACCTCTCGATATTA
ATGACCAACGCACTCTTCCAAGAAAAGAGATTGTACGAAAAAAAGCTCAG
AAAGACCCTAAATGATTCCTAAACAAGGTTCTCACCTATTTGGATGACTG
GGAGAAGGAAGCAAAATCACTGACACAATTGACAGTAGAAGAACAAGCGA
AGCGATGTTTGAGCAAGCAGACTGTTTTTGGGTGGCGAATGACAAGTCCT
CAGTGCTCACATGGCAAATGCCCTCAAATTGCAAAACGAATTTTACACAG
AAGGTACACGAAATTTCATCAAAATATTTGATCGACTCTTTGATTGTTTG
AATGGTCAATCCTATGACGACTATGGCAAACCAGATAGAGCACCTTACAG
AAAAGTGGATGATGCAAGATTTACGATGTTGTGGTTCATTATGTTATTTC
GGTACAATGGACAAGATATCGGCTGGAACCATATCGTACAAGTATATGAA
TGGGATCTCAACGAAAAGAGTCAATCATATGGTCTTCGAGTCCTTAACAA
ATTGACAGAGGATCATATCAAACTTACCCCACGACTAAGAATGAAAGTAA
AGCTTGCAGCTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007350XLOC_007350Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013166-exon-sc0000162-1575043694:393904..394102TCONS_00013166-exon-sc0000162-1575043694:393904..394102Clytia hemisphaericaexon
TCONS_00013166-exon-sc0000162-1575043694:393589..393768TCONS_00013166-exon-sc0000162-1575043694:393589..393768Clytia hemisphaericaexon
TCONS_00013166-exon-sc0000162-1575043694:393307..393436TCONS_00013166-exon-sc0000162-1575043694:393307..393436Clytia hemisphaericaexon
TCONS_00013166-exon-sc0000162-1575043694:392143..393078TCONS_00013166-exon-sc0000162-1575043694:392143..393078Clytia hemisphaericaexon
TCONS_00013166-exon-sc0000162-1510915933:393904..394102TCONS_00013166-exon-sc0000162-1510915933:393904..394102Clytia hemisphaericaexon
TCONS_00013166-exon-sc0000162-1510915933:393589..393768TCONS_00013166-exon-sc0000162-1510915933:393589..393768Clytia hemisphaericaexon
TCONS_00013166-exon-sc0000162-1510915933:393307..393436TCONS_00013166-exon-sc0000162-1510915933:393307..393436Clytia hemisphaericaexon
TCONS_00013166-exon-sc0000162-1510915933:392143..393078TCONS_00013166-exon-sc0000162-1510915933:392143..393078Clytia hemisphaericaexon
TCONS_00013166-exon-sc0000162-1491911889:393904..394102TCONS_00013166-exon-sc0000162-1491911889:393904..394102Clytia hemisphaericaexon
TCONS_00013166-exon-sc0000162-1491911889:393589..393768TCONS_00013166-exon-sc0000162-1491911889:393589..393768Clytia hemisphaericaexon
TCONS_00013166-exon-sc0000162-1491911889:393307..393436TCONS_00013166-exon-sc0000162-1491911889:393307..393436Clytia hemisphaericaexon
TCONS_00013166-exon-sc0000162-1491911889:392143..393078TCONS_00013166-exon-sc0000162-1491911889:392143..393078Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013166-proteinTCONS_00013166-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000162supercontigsc0000162:392143..394102 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.344444	0.44785	0.227498	0.127184	3.87085	2.50821	3.02605	2.79841	2.03179	1.25835	1.86116	1.98811	1.92808	1.5067	1.79288	2.01149	2.65037	2.09815	2.74614	4.31045	2.88624	3.49245	0.987332	1.40628	0.246543	0.247538	5.70697	6.34266	3.66377	3.79772
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013166 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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