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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013156 ID=TCONS_00013156|Name=TCONS_00013156|organism=Clytia hemisphaerica|type=transcript|length=2126bp
GTCTTACCGCGcggtgaaaattttgaatcatttttgtTCGATCTTTTGGA
AAATCAATTTATAGAGGAGtgaatcaaatttttaaaaatattggaatttt
tttgatttttttaaacttggtatattctttgaaaattcttttggaCGATG
ATAAGTATGGTCAATGTGAAAAATTCGAGgcaTTCAGCTGCAATTACAAG
CTACGATTATTTCCCAACGGCATCCAGTCACGTCAGTGTTGGAAGTCACC
CTGGTGATTACAAGAAGCAGCCTAGCAGTTCAATGGAAGACTCCCCTGTA
GTGTGTCTACCTCCAACTCTCATTGTCAACGAACGAGTGAGTAACAGTGA
CAAGTCTTCAGAGCTATCAGAAGAAAGATTATGCGCCATCTGCAGTGATC
GGTCTACAGGCAGACACTATAAAGTTTATTCTTGTGAGGGTTGTAAGAAT
TTCTTTCGAAGAAGTGTCCGAAAAGATGTGAAATATGTCTGTCCGGCGTA
TGGAAAATGTCCGGTACATAAAGATCAACGAACTAGATGCAAAGCTTGCA
GActgagaaaatgtttgaaagttGGGATGAGGAAAGAAGCTGTACAATGT
GAACGCAAGCCATTGGTATTGACGCAACTCTCGGTACCGAGTATTGACGA
CAAAGTGAACCGAAACAAAACCATTGGTCTCGATTATCGAACGAGTTCCG
ACGAGAGCGATGACGACAAACGATCAGATCCGTTAACAAACAAAACATCT
TCCACATCCAGTGAAAAAGATAACGCCCTTCTAAATGTTGTCATAGACAG
GGTGGATGAAGAGGGTGGAAGGGCGCTTTTGAATTTAGCTCAAAGTTGCC
AACGGAAACCGATTTCGATAGATAGTGATGAGAACTTGATGCAGTATTCA
GAAATAGGAACCATCAAATCGGAATGTTCAGACGAAACACCCCCGTCATC
TCACACCTCTTACCCGGCCTATACGGAAAAACCACCAGAAGTGCTCAGTT
TAGCACATGGACGATTCCACCCATATAACCGTGCAACGTCCTTACCTTTT
CGTAACAGTTTCACACCTCAACATAATGGGTGGACCCTGGATATGTCGAC
TATgtccaaaaacaaaaactttgtcctTGAAGCTCCTTCAATTTCCACAA
CTGATGTCGGCTATTTATACGAAATTTCAACTCGTTTATTATTCGCTACT
CTAGACTGGGTACAAACGTTAGAACCTTTTCAAAAACTCTGCAAAGTAGA
CCAATTTACATTACTGTTAAATAAATGGCATTCTTTATTCATCCTTGGTA
TGGCACAATCTTCACCAATGTTTCCGATATCAACAATGTTGTTTTTGGCG
AACACTGGTCATGAACCACACTCTGATCAAACCAACACACATCTACCATG
GAGCACGTTCTTGAAATTGAAAGATGTGATAATGAATGGATTCGTGGAAT
GCAAAATATCGATGGAGATTTATAATTGCATGAAGATTATCGCTCTTTTT
GATCCGGaaatCCCTGGCCTTGGGGACCGAGAATTCACCCGCCGCACATG
CGCACACTCACGACAATTATTGGAAGATCTTTTCGAAAATAATCAGAATC
CAAAAGACTCGATGGATAATGATAAGATGAACTTGAATCAACAACGTATG
TTTAAAGTTTTAGAATGTGTGAACACGATACGTAAAGTTGAAGTGACTGA
TACTTTCTTTGTACCCATATTGAGACAGACCTCTATTGAGTACATCATAC
AAAAGGTTTTGAATGCAGAGAAAGATTGAGCGGAGAATATTAATCCACGT
TTTGGCTGGCAACTGCAATAGCAAATATATAATagtaaaatagcaaaaaa
caaaaaaataaactatGAATAAAATAAAACCAACTTTGATTCTCAGACCT
CTACAGATATACTTGAGGATTAGTATTGATCCAGAAGTTTTCCTGTGTTT
GGCACTAAATGGGACAAAAGAttgagtttttcatttttagaaaaacttga
tGGGTTGGAAACCCATAGAGAGCGAATTAGCTgtaaaaccaatttttttt
ctgttttactatgttaaaaacgaaattttcaaaacataattttgggatat
tattattattgtaaaAATTTAGTGTG Run BLAST on NCBI transcript from alignment at sc0000162:246128..252341- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013156 ID=TCONS_00013156|Name=TCONS_00013156|organism=Clytia hemisphaerica|type=transcript|length=6214bp|location=Sequence derived from alignment at sc0000162:246128..252341- (Clytia hemisphaerica)
GTCTTACCGCGCGGTGAAAATTTTGAATCATTTTTGTTCGATCTTTTGGA
AAATCAATTTATAGAGGAGTGAATCAAATTTTTAAAAATATTGGAATTTT
TTTGATTTTTTTAAACTTGGTATATTCTTTGAAAATTCTTTTGGACGATG
ATAAGTATGGTCAATGTGAAAAATTCGAGGTAAAAATTCCGTCCACTCTT
TTTTATAAGAACCATTTTAGTTGACGTTCCGCTGTTCTTAATTTCAGCCT
CTTGTTGTTCTTATCTTGATCTTATTTTTTAGCTTTGTTGTTCTTGCAAA
ATTGAAGCTAGAATGAGATGCAGGGATGTAAATGTAGTCGTATTTTTCTG
TTTATAAATTCAAATCAGAACTGTTGTACGGTATGCAGCCGTGACTTGAA
TTGTTCATTCTCAGGGATACCTTTTGGGTCCTCTAGAGTTCTAGAATGGT
GTTTAACTCTATGTGAGTCTGAATACTCACTCTGATATTCTATACAAAAA
ATACCCATCATCAGTTTTATACATAAAGGGTTGGACTCTCTTTACTCCTT
CCCTCTATGCAATCAGCAAAAGAATTTAGATGATATGCAACTGTAACGTA
ATACCAATTTTAATTTTTTTCTAAAACTTATAACAAAAGTTCAAACTCTG
TATTATAAAAGCATATCAAGTGAACTTTATTATATGATATATATTTTTCT
TTCTCTTACGATTGTTTTTTATCATTCCTACTCATGTTGTAAAGCTTTGA
GTAGAGGGAAAGCTTGCGTGACTTAAGGGGTGGCTTGTCACGCCATACTT
TTTAACCGTTGTCTATCCAAGTTGGGTCAGATCATTCTAAGCGTTATGTA
TCTTAATGACGTCGATTTTTGCGCAAAAATTTGACCCCATAACCAATATT
ATTATTCGGGACGTCCCTTATGTTTAAAAGGTCAAATGAAAGAGATTGAA
CCCCCGTCTTTGGTTATGAAACAGTATCCTTCAACAATAGCTTGAAACTG
CGTTGGTAGTTTTTCTCATAATTTGACTTTCTGATAAAATATCGAAAACG
AGGTCACTCAAACATGGGGATTTGATACATGACATTGTGAAAGACAGAAA
TGAGGACTTGCTACTGGCTAACTCGTTTTAAAGGCGCTCTTTGATTGGTT
CGTTCCATCTACAGTTACGAAATGTAATGAATATGTCGTAAGACAAAAGT
TGTAGTCGGAGGTTATGAATCAAAAATATTGAGATGAAAAGTGAAAAGAC
AGACGTTACACATGTAATATTAAAAAGTTCGTTGACTTCATCAATTTATA
AACAACTTACAAGATAAAAAAGGCTTTTCTCTTCGAAACCAAGAAGGTTG
GGAATGAAGACAGTTTGGAGGGTTTTAATGGCAAGTTGACCTAGCCCAAA
GAATAAAGTTTTAATGAAATTGTATTTTTTTCTTCAGGCATTCAGCTGCA
ATTACAAGCTACGATTATTTCCCAACGGCATCCAGTCACGTCAGTGTTGG
AAGTCACCCTGGTGATTACAAGAAGCAGCCTAGCAGTTCAATGGAAGACT
CCCCTGTAGTGTGTCTACCTCCAACTCTCATTGTCAACGAACGAGTGAGT
AACAGTGACAAGTCTTCAGAGCTATCAGAAGAAAGATTATGCGCCATCTG
CAGTGATCGGTCTACAGGCAGACACTATAAAGTTTATTCTTGTGAGGGTT
GTAAGAATTTCTTTCGAAGAAGTGTCCGAAAAGATGTGAAATATGTCTGT
CCGGCGTATGGAAAATGTCCGGTACATAAAGATCAACGAACTAGATGCAA
AGCTTGCAGACTGAGAAAATGTTTGAAAGTTGGGATGAGGAAAGAAGGTT
TGTCTTCAGTTTTCATTCTTTATTTTGTAGAGAAAACTTTCTTTCAGTAG
AATTCCAGGATGAATATTCTCTTAATTTTCGACCCATTGCATTTTCATAT
TTCGCTTGCATTCAGAAATCATATTATTTTAGGGTCAAAGATAAGAAACA
AAATTTGCTTATCAAGAAACAAAACCCAAACACCTGCAATACACACATCA
TACATTCTCACTTTTTCTAGGCTCTTTTGGGAAAGAAAACTCCGCAGAGT
CTTTAGGGTACGTAGAAATTTCAAAATATTTAACAGTAAATTGTTGGCTA
AAATTTGAGTTTTATTTAATTGGGCTTAGTTGGCAGGATCAGGATGATGA
ATTTTAAGCTCGATTAGTTAAGGACTCAATACTGTAGGAATAAGGTTGCA
CAAAACTTGACCCAGTTTGAAAAAAATATCAGGAAACTTTACCAAATATC
AAATTAATTATAAATATTAACATGCTGTCACGTGAATTTTCTTAACAGAG
AGCGAAGATAAAAGACTCAGCATTGATAATCAATGTTTTTAAAAATAGAC
GTTCTTAAAGCTTCTCGAGGTTGTGTTATGTTTTAAATTTCTGCATGACA
TCGAGCCAAGGTCAGAAATTCATTAATTGTCCTGTCTCAATACAAATCAA
ATGTCAAAAAAAACTCCAAAGATGGTATCATAATCTAAAGAATTATATGC
AAACCCGATTAGAATTTCTCGAAAGTATTTTTCTCCTCTATTTTTTAATG
ATTGCGTTAGTGGTTTTACAGGGACAAATAAAAGTTATACTGTATACTAG
TGTCTCACATAACTGACTATCAAAATATCTGATAACAATTTCTTTTGTTT
AACCTTTCCCTATTGTCCTTTTCATCCAATCAAGATAAGTTTCTCATGAA
AATCCAATCAGTTCAATGACATCATTTCTCTTCGAATTCAAGTTTTGGAA
AGTCTCTCGGAACTCCTCTTTTTTCCTGGAAGATTGAGATATCTTTTTTT
CATAAGAAGCCGTAAAATTTGGCTGAGATTTGGCTAATCCTATTATGATT
GGGGTTTTTGGGAACGAGTGTTACTAACATTATATGTTCTCACTTTACTC
ACTTATTTAGTCAAATGAGTTTAATATCTTGTAGAGAATCTTCTTTCTCT
AGAGTTTTAAATACATAGTAGAGCTGTCAAATGGGCTTTTTCTTGGTCGC
ATCTGAAATCTGACGTGAAAAACGGTCTTATCTGTCCTTAGTTTTTTTTC
CTTATAAAATTGTTCTTAAAAACGTGTCTTTCAAAATTTTCTTTCCTTGT
TTATTAGCTGTACAATGTGAACGCAAGCCATTGGTATTGACGCAACTCTC
GGTACCGAGTATTGACGACAAAGTGAACCGAAACAAAACCATTGGTCTCG
ATTATCGAACGAGTTCCGACGAGAGCGATGACGACAAACGATCAGATCCG
TTAACAAACAAAACATCTTCCACATCCAGTGAAAAAGATAACGCCCTTCT
AAATGTTGTCATAGACAGGGTGGATGAAGAGGGTGGAAGGGCGCTTTTGA
ATTTAGCTCAAAGTTGCCAACGGAAACCGATTTCGATAGATAGTGATGAG
AACTTGATGCAGTATTCAGAAATAGGAACCATCAAATCGGAATGTTCAGA
CGAAACACCCCCGTCATCTCACACCTCTTACCCGGCCTATACGGAAAAAC
CACCAGAAGTGCTCAGTTTAGCACATGGACGATTCCACCCATATAACCGT
GCAACGTCCTTACCTTTTCGTAACAGTTTCACACCTCAACATAATGGGTG
GACCCTGGATATGTCGACTATGTCCAAAAACAAAAACTTTGTCCTTGAAG
CTCCTTCAATTTCCACAACTGATGTCGGCTATTTATACGAAATTTCAACT
CGTTTATTATTCGCTACTCTAGACTGGGTACAAACGTTAGAACCTTTTCA
AAAACTCTGCAAAGTAGACCAATTTACATTACTGTTAAATAAATGGCATT
CTTTATTCATCCTTGGTATGGCACAATCTTCACCAATGTTTCCGATATCA
ACAATGTTGTTTTTGGCGAACACTGGTCATGAACCACACTCTGATCAAAC
CAACACACATCTACCATGGAGCACGTTCTTGAAATTGAAAGATGTGATAA
TGAATGGATTCGTGGAATGCAAAATATCGATGGAGATTTATAATTGCATG
AAGATTATCGCTCTTTTTGATCCGGGTAAGATTTCATTCTTTGATGATTG
TTGCACCCATTTCTACACCCCTTTCTCACAGACCCAGTAGAATTCTCAAC
TTCAGTTGAGCTAGAATCTGACAATGTATATATGTCTGTCCGAAAACTTT
GGGACAGGCTTGAGACTTCAAAGATGGTCGAATTTGGCTGAAATCTAGCA
CACTTGTTGCTTGACTGAATATCTGGGGTGTCTTTTTTATTTTTTGAAAG
TTTTCATTTATAAGGGCTTGGTCATGAGTTTTAGCTCCAAAACGAGGCTG
AAACTTTGGGGGTAGGCTTGAGACTTGACTAGGTTTTGGCTGAAATTTGG
CCCACTTGTTCATTTGGTGAAAATGTGATTTTTCATTTTTTGAAAATCTT
TGGAAAAAATGGAGTATAATTTTCCACTGGGGAAGATATTTTGGCCAATT
CTTCGAGTAGGAGGGGGTCCCACCGGGTCTGTGAGAAGGGTTATATTTCT
GAAGTCTCAGAAAGCTAGTTGAGTTCACAATGATCACTATAAACTAACAG
AGAGTCCCACCAAAGCTATTTTATTATTCCACTGGAGAGAGCGTTATTCA
GAAACTACAAGAAAACTACTTTGAATTTTGAATTTCTATCAAAAAATTTA
TTACGTTGAATGACCACATAAGGGAACCAGTTTTTTACGGTCTAGTCCAT
TTTCCTGGCTCCCAGAGAAAATTGAAATGCTTTTTTTACCTCTATTAATT
TAGAAGGTATTTACTGTAATTTAAATTTAAGAAAGACTGGAAAATAGATG
TCTGCATCGTAACCACCTTTTGTTTTGGAAAGTCAGGGAATCCCTTTTCG
TTCTTAATTTTCCATCATGACATATTCACGACAGACTTAATTAATTCACC
GTTTACATTGTGAAAAGAAAACGTCATTTTAAGCTGTAAGCTCATCAGTG
CACGCAAGTCACAAACAATACAACAGAAACAGTAGGAAACGAGCTCACGA
GACACTTCATGTGCTTATATATACCGAGTTCAACGGATTTAATGATGAAA
AGAATATAAGAATAAAATGAAGTAACGAAATTCGTGAGTTCAACATGGGC
TTGAAATTTCACGAAATCGACCTAAGTCTTTTTCTTGACTTCCTTTTGAA
CAGTGAGAAATCCCCATTCATTTCCACTAGGTGTGCGGGCTTCACTTTCA
AGCATTTTATTCTCCATGCTCACTCACTCGAAACACAGTCTTATGTACTG
GAGATTTTTAAAACTTAAACTGTGAACACTGATAGCCCTGATAGCCTTCT
CACCCAAAAAGGCCAGATCTCTTAAAGAGCGAGATTGAAGTTTTACTTGC
TATTCTACTCGAAGTCATATCCAAAAAAAGGGGAAAAGTAAAATTTCTCA
AAAAAGAAAAAGAAACTGCGAATCTCTAATAACTGATAAACTTTCAATCT
TTTCAGGGATAATTTTACTTCAATGATTATATACACGAGTCTGAAACTTT
GCGTGACTCCCACTCCATAATATATCTCCCTTTATTTATTTTCAGAAATC
CCTGGCCTTGGGGACCGAGAATTCACCCGCCGCACATGCGCACACTCACG
ACAATTATTGGAAGATCTTTTCGAAAATAATCAGAATCCAAAAGACTCGA
TGGATAATGATAAGATGAACTTGAATCAACAACGTATGTTTAAAGTTTTA
GAATGTGTGAACACGATACGTAAAGTTGAAGTGACTGATACTTTCTTTGT
ACCCATATTGAGACAGACCTCTATTGAGTACATCATACAAAAGGTTTTGA
ATGCAGAGAAAGATTGAGCGGAGAATATTAATCCACGTTTTGGCTGGCAA
CTGCAATAGCAAATATATAATAGTAAAATAGCAAAAAACAAAAAAATAAA
CTATGAATAAAATAAAACCAACTTTGATTCTCAGACCTCTACAGATATAC
TTGAGGATTAGTATTGATCCAGAAGTTTTCCTGTGTTTGGCACTAAATGG
GACAAAAGATTGAGTTTTTCATTTTTAGAAAAACTTGATGGGTTGGAAAC
CCATAGAGAGCGAATTAGCTGTAAAACCAATTTTTTTTCTGTTTTACTAT
GTTAAAAACGAAATTTTCAAAACATAATTTTGGGATATTATTATTATTGT
AAAAATTTAGTGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013156-exon-sc0000162-1575043694:252163..252341 | TCONS_00013156-exon-sc0000162-1575043694:252163..252341 | Clytia hemisphaerica | exon |
| TCONS_00013156-exon-sc0000162-1575043694:250495..250904 | TCONS_00013156-exon-sc0000162-1575043694:250495..250904 | Clytia hemisphaerica | exon |
| TCONS_00013156-exon-sc0000162-1575043694:248267..249184 | TCONS_00013156-exon-sc0000162-1575043694:248267..249184 | Clytia hemisphaerica | exon |
| TCONS_00013156-exon-sc0000162-1575043694:246128..246746 | TCONS_00013156-exon-sc0000162-1575043694:246128..246746 | Clytia hemisphaerica | exon |
| TCONS_00013156-exon-sc0000162-1510915933:252163..252341 | TCONS_00013156-exon-sc0000162-1510915933:252163..252341 | Clytia hemisphaerica | exon |
| TCONS_00013156-exon-sc0000162-1510915933:250495..250904 | TCONS_00013156-exon-sc0000162-1510915933:250495..250904 | Clytia hemisphaerica | exon |
| TCONS_00013156-exon-sc0000162-1510915933:248267..249184 | TCONS_00013156-exon-sc0000162-1510915933:248267..249184 | Clytia hemisphaerica | exon |
| TCONS_00013156-exon-sc0000162-1510915933:246128..246746 | TCONS_00013156-exon-sc0000162-1510915933:246128..246746 | Clytia hemisphaerica | exon |
| TCONS_00013156-exon-sc0000162-1491911889:252163..252341 | TCONS_00013156-exon-sc0000162-1491911889:252163..252341 | Clytia hemisphaerica | exon |
| TCONS_00013156-exon-sc0000162-1491911889:250495..250904 | TCONS_00013156-exon-sc0000162-1491911889:250495..250904 | Clytia hemisphaerica | exon |
| TCONS_00013156-exon-sc0000162-1491911889:248267..249184 | TCONS_00013156-exon-sc0000162-1491911889:248267..249184 | Clytia hemisphaerica | exon |
| TCONS_00013156-exon-sc0000162-1491911889:246128..246746 | TCONS_00013156-exon-sc0000162-1491911889:246128..246746 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000162 | supercontig | sc0000162:246128..252341 - |
Blast
BLAST of TCONS_00013156 vs. Swiss-Prot (Human)
Match: RXRB (Retinoic acid receptor RXR-beta OS=Homo sapiens GN=RXRB PE=1 SV=2) HSP 1 Score: 112.849 bits (281), Expect = 5.490e-26 Identity = 52/100 (52.00%), Postives = 65/100 (65.00%), Query Frame = 1
Query: 310 PPTLIVNERVSNSDKSSELSEERLCAICSDRSTGRHYKVYSCEGCKNFFRRSVRKDVKYVCPAYGKCPVHKDQRTRCKACRLRKCLKVGMRKEAVQCERK 609
PP L V + +RLCAIC DRS+G+HY VYSCEGCK FF+R++RKD+ Y C C V K QR RC+ CR +KCL GM++EAVQ ER+
Sbjct: 181 PPVLGVRGLHCPPPPGGPGAGKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRYQKCLATGMKREAVQEERQ 280
The following BLAST results are available for this feature:
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