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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013139 ID=TCONS_00013139|Name=TCONS_00013139|organism=Clytia hemisphaerica|type=transcript|length=3780bp
ATGTTTGTGGAAAAAAGAGGAAATCAAAACAGATGGAAGAAATCAAAGAA
TggtagaagaagaaaaggacTCACTCCTGTCCAACGAAGATGGTGAACCA
TCGCTCAAACAAAAGACGGTTGAACTGAAAGTGTACCCTCAACGATGGCT
GATGTTATTCATCTTTTCAATGACAACTCTCTTAAACGGTTCCATGTTCA
TGGGGTTAAGTTCCGTCGTGGAAGTGGTTGCACCGTATTATGGTGTTAGT
GCGGTACACATCGAGTGGTTGTCCAACATGTTTATGGTCGTGTTTATTTT
CGTTGCCATGCCATCCGCTTACATCATGTCATTATTCGGCGTCCGTACAG
TTCTCACCTTAGCGGCTGGGTTAGCCGCAGCTGCGACGGCTATACAATTT
GCAGGTGCTCATCAAGATAAATTCCAGTTTGTGTTGattggtcaattttt
tgcaGCGATTGCGTACGGAAACATGATTCAAATCCCTGGTAAACTTTCTG
CGACCTGGTTTCCACCACGTGAGAGAGGGATGTCGACCTCCATTGGTGTG
TTTATGAATATTCTGGGTGTTGCTGTTGGTTTCGTTCAACCTTCATATCA
GATCCCTGTCAGTTATGACCCACCCGTTGTTTACGTTGGATTGAAACATT
TCTATACAGCGCGAATGTTAATGGcttttattatcttttttctaaCGGTG
GTGTTTTACAGGGAGAAACCGCCCACGCCTGTCTCTGTCATTGAAGGGAA
GAAGCATCTGGAATTCTTCGACAGTTTAAAAGTACTTTACaaggattttc
attttcacttgaTGGCGCAAGCCTACGGAATTTATTTCGGTCTTTTTGTG
GCCGTGTCCGTCGTTTTTTCACCATTAGTCAGTTGGCAATACGGAAGCAA
AGGAGATATTCAACACTTGATTGGTTGGATGGGTTTCACATGTGATATCG
CCGCCATTATTAGTTGTCTTGCCATCGGATTCTTTCTTGATCGATATTCT
CATCATAAAGCGGTTGCAATTTTTCTCAACGCCGGATCCATGTTGTTATG
GCTTCTTTTCGCGTTGATATTGACACAAACCAAAAACTTTAATCTCTTGT
TTTTCGTTTATGTTGTATACGGAACAGTCGGTATCCCGTATTTTGCTTCG
GGTGTGGAGCAAGCAGCGGAAATGACGTCACCCGTACCAGAAGGGACCTC
GAGTACCGTTATTCTTCTACTTGGTAATATTTACGGATTTGTGATGATTT
TTACTTTCGGTGCAATGATTGAGGATGGTTACCCATTGACTACTTTATAT
CTCATTCTGGGATTGTATGTTCTCTCAACTGCTTTTGTGACTTTTTCGAA
GATGGAGTTGAAACGTTCAGAAGCGGAGAGCACCACCTCCACAATCTCCA
TCGGTGATGATGAAGAAGACAGTGATGAAAAACCTAAATTAAATGATTCT
CGATAAGATGAGTTTTGAGTTGGACTGATGTTTACCTACTAAACCGTTAG
GACACTTACTACTAGAGAACACGTTAGTCTCAACTAATGATAGGGTTTTC
TTTCCTACTCATAGATTTGTGATATTTTCTGTTACCATTAGACCGTACTG
ATATCTACGACGTGTTTCAGGCAAATTTTCGTTATTCTTTAAtgagatta
taaaaatattgatatcaCGAGGAAGAAGCTATTAAGCctgcaaaaatgca
aaaatttcagatggaatttgaaaatttagaatctaagacaaattattttt
tactatttGAGATTTAGAATTCTTGATTCTCAATTGGGTTGTTGTTTAAA
ATATCCTTTGGGTGACTGACACATGACTGACGGTTTCTGTAAATATTCTT
TagcaaattaatttttgaattcACTAATATTATTGTAATGTTTTTGTTAA
GTTTAAAAATGGGGGATATGAAATTGCTAATGCAATAATAAAACAATCTT
TAACTGCTTTGagttaggcttctgctcatcctctaacGAAAAgatttctt
ataggaagtatatctatagaggtctgcgattcagactagcttTCAGAAGG
TTCCTTCCTACTGTTACAACTACAAGGATTCTTTCATACAGTAAAATTCG
CAATTTTTGGCGTCCTTTGAGCTCAAAAGTTAGTTCTATTTTTTAGAAGA
ACGTCTAAATTAGATTATGTGGTACATTGGACTTACGCTAATTCGATTCA
GTTCCTGTCATTTATAAACACTCGTAATCTATaaataattcgaatctctc
tttaACTCGAGCTTACAACCGTATAAGTTTTTAAGTTTAGTCCAATAGTT
ACCACATGCTCaagcaaaaatccaaaaaaataaagCCTACTTTTCAAAAG
GNTTCAACTGCTTTTGTGACTTTTTCGAAGATGGAGTTGAAACGTTCAGA
AGCGGAGAGCACCACCTCCACAATCTCCATCGctgatgatgaagaagaag
acaGTGATGAAAAACCTAAATTAAATGATTCTCCATAAGATGAGTTTTGA
GTTGGATTGATGTTTACCTACTAAACCGTTAGGACACTTACTACTAGGGA
CCAAGTCAGTCTCAACTATTGATAGGGTTTTCTTTCCTACTCATAGATTT
GTGATATTTTCTGATACCATTAGACCGTTCTGATATCTACGACGTGTTTC
AGGCAAATTTTCGTTATTCTTTAAtgagattataaaaatattgatatcaC
GAGGAAGAAGCTATTAAGCctgcaaaaatgcaaaaatttcagatggaatt
tgaaaatttagaatctaagacaaattattttttactatttGAGATTTAGA
ATTCTTGATTCTCAATTGGGTTGTTGTTTAAAATATCCTTTGGGTGACTG
ACACATGACTGACGGTTTCTGTAAATATTCTTTagcaaattaatttttga
attcACTAATATTATTGTAATGTTTTTGTTAAGTTTAAAAATGGGGGATA
TGAAATTGCTAATGCAATAATAAAACAATCTTTAACTGCTTTGagttagg
cttctgctcatcctctaacGAAAAgatttcttataggaagtatatctata
gaggtctgcgattcagactagcttTCAGAAGGTTCCTTCCTACTGTTACA
ACTACAAGGATTCTTTCATACAGTAAAATTCGCAATTTTTGGCGTCCTTT
GAGCTCAAAAGTTAGTTCTATTTTTTAGAAGAACGTCTAAATTAGATTAT
GTGGTACATTGGACTTACGCTAATTCGATTCAGTTCCTGTCATTTATAAA
CACTCGTAATctataaataatttgaatctctcTTTAACTCGAGCTTACAA
CCGTATAAGTTTTTAAGTTTAGTCCAATAGTTACCACATGCTCaagcaaa
aatccaaaaaaataaagCCTACTTTTCAAAAGGGGCATTAAAATTATATA
ATGAAATTAAGTTGAAGTctagaaggaaatatttatatAGCGCACGATTT
GAAGTCACTTTATTTCCATAAAAGTTGGGTGATCTTTGTGGTAGTGTTga
catagcctggatatccaggctagtgtTGGCATAATTGCTAGAAGAAAGCA
CTAATAGATTTAATCCATCGTCGTAAATCCTAATCCATCATTTTCCTGGA
AGATTCACTTCTAGCCTTCAACTTTACGTCATTGGCTTTaatgtaatttc
tttttttttggtggCAGTGTCAGTCGTAGTATTTTGACACGATCAATACA
TTGTtggaagaaaaattttgaatagatatttgaaattgaaaaagggCCCA
AGAATTGTTTTACACTTTTCAGAAACTGTG Run BLAST on NCBI transcript from alignment at sc0000162:194449..198947- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013139 ID=TCONS_00013139|Name=TCONS_00013139|organism=Clytia hemisphaerica|type=transcript|length=4499bp|location=Sequence derived from alignment at sc0000162:194449..198947- (Clytia hemisphaerica)
ATGTTTGTGGAAAAAAGAGGAAATCAAAACAGATGGAAGGTAGAAATCTC
GTGTTTCTTTCTTCGTCTTTTGTTATTACGCAAAATATTTCTACCTAACA
ACTCGTTTTTGAAGGACACCCTGTATAAAACTATCGGTGGCGATAGTGGA
GCATTATACCGGCATTTCCCGGCTCAGGAAAGTCCGGAAATGCCGTTTTT
AAGAGTACCGTAGCCATAACTCGGGCTGGAGGCCCCCAAAAGTACTGTAA
GCCTTCGTTAACGTTGAGACCGGTCTGAGAGCATATGCATTATTACAATT
TTTTATTGCTTGGGTGTGATTTACTGTATTTCTTTTATCCATTGCATTTC
ATCGAGTCGTCAGAATTGTATGTGTTGAAAAGATTTAGTATAGTGAACCT
CCCTGCGTGCCTTTCTATTCTTTGTCAGATTGGATTAGATTGCGTGGAGC
TCTTACAGAAATAAATACCATTCTCGTCATTGTTTAATTATTTAAAAAGA
GGATTTAAAAACATTGTCGACATGCAAATATTTTTGTAGAGAGACGTTTT
TATTTTGTTGTTCATTTGCTACAGGAAAGAGTGCAATAACGATGAGATTT
GCGATTCTAGGTTTACGTTGCGGATTTGAATCGATTGTTGTTCGATTTGA
TTCGAATCGATCTTACTGTTGAAAAACTCTACTCGATATTTAGCCTAATC
TGTTTATACTTGACAAAATCTCTTGAAAATCCAAAAACAATCTCTTGTTG
TTTTTCAGAAATCAAAGAATGGTAGAAGAAGAAAAGGACTCACTCCTGTC
CAACGAAGATGGTGAACCATCGCTCAAACAAAAGACGGTTGAACTGAAAG
TGTACCCTCAACGATGGCTGATGTTATTCATCTTTTCAATGACAACTCTC
TTAAACGGTTCCATGTTCATGGGGTTAAGTTCCGTCGTGGAAGTGGTTGC
ACCGTATTATGGTGTTAGTGCGGTACACATCGAGTGGTTGTCCAACATGT
TTATGGTCGTGTTTATTTTCGTTGCCATGCCATCCGCTTACATCATGTCA
TTATTCGGCGTCCGTACAGTTCTCACCTTAGCGGCTGGGTTAGCCGCAGC
TGCGACGGCTATACAATTTGCAGGTGCTCATCAAGATAAATTCCAGTTTG
TGTTGATTGGTCAATTTTTTGCAGCGATTGCGTACGGAAACATGATTCAA
ATCCCTGGTAAACTTTCTGCGACCTGGTTTCCACCACGTGAGAGAGGGAT
GTCGACCTCCATTGGTGTGTTTATGAATATTCTGGGTGTTGCTGTTGGTT
TCGTTCAACCTTCATATCAGATCCCTGTCAGTTATGACCCACCCGTTGTT
TACGTTGGATTGAAACATTTCTATACAGCGCGAATGTTAATGGCTTTTAT
TATCTTTTTTCTAACGGTGGTGTTTTACAGGGAGAAACCGCCCACGCCTG
TCTCTGTCATTGAAGGGAAGAAGCATCTGGAATTCTTCGACAGTTTAAAA
GTACTTTACAAGGATTTTCATTTTCACTTGATGGCGCAAGCCTACGGAAT
TTATTTCGGTCTTTTTGTGGCCGTGTCCGTCGTTTTTTCACCATTAGTCA
GTTGGCAATACGGAAGCAAAGGAGATATTCAACACTTGATTGGTTGGATG
GGTTTCACATGTGATATCGCCGCCATTATTAGTTGTCTTGCCATCGGATT
CTTTCTTGATCGATATTCTCATCATAAAGCGGTTGCAATTTTTCTCAACG
CCGGATCCATGTTGTTATGGCTTCTTTTCGCGTTGATATTGACACAAACC
AAAAACTTTAATCTCTTGTTTTTCGTTTATGTTGTATACGGAACAGTCGG
TATCCCGTATTTTGCTTCGGGTGTGGAGCAAGCAGCGGAAATGACGTCAC
CCGTACCAGAAGGGACCTCGAGTACCGTTATTCTTCTACTTGGTAATATT
TACGGATTTGTGATGATTTTTACTTTCGGTGCAATGATTGAGGATGGTTA
CCCATTGACTACTTTATATCTCATTCTGGGATTGTATGTTCTCTCAACTG
CTTTTGTGACTTTTTCGAAGATGGAGTTGAAACGTTCAGAAGCGGAGAGC
ACCACCTCCACAATCTCCATCGGTGATGATGAAGAAGACAGTGATGAAAA
ACCTAAATTAAATGATTCTCGATAAGATGAGTTTTGAGTTGGACTGATGT
TTACCTACTAAACCGTTAGGACACTTACTACTAGAGAACACGTTAGTCTC
AACTAATGATAGGGTTTTCTTTCCTACTCATAGATTTGTGATATTTTCTG
TTACCATTAGACCGTACTGATATCTACGACGTGTTTCAGGCAAATTTTCG
TTATTCTTTAATGAGATTATAAAAATATTGATATCACGAGGAAGAAGCTA
TTAAGCCTGCAAAAATGCAAAAATTTCAGATGGAATTTGAAAATTTAGAA
TCTAAGACAAATTATTTTTTACTATTTGAGATTTAGAATTCTTGATTCTC
AATTGGGTTGTTGTTTAAAATATCCTTTGGGTGACTGACACATGACTGAC
GGTTTCTGTAAATATTCTTTAGCAAATTAATTTTTGAATTCACTAATATT
ATTGTAATGTTTTTGTTAAGTTTAAAAATGGGGGATATGAAATTGCTAAT
GCAATAATAAAACAATCTTTAACTGCTTTGAGTTAGGCTTCTGCTCATCC
TCTAACGAAAAGATTTCTTATAGGAAGTATATCTATAGAGGTCTGCGATT
CAGACTAGCTTTCAGAAGGTTCCTTCCTACTGTTACAACTACAAGGATTC
TTTCATACAGTAAAATTCGCAATTTTTGGCGTCCTTTGAGCTCAAAAGTT
AGTTCTATTTTTTAGAAGAACGTCTAAATTAGATTATGTGGTACATTGGA
CTTACGCTAATTCGATTCAGTTCCTGTCATTTATAAACACTCGTAATCTA
TAAATAATTCGAATCTCTCTTTAACTCGAGCTTACAACCGTATAAGTTTT
TAAGTTTAGTCCAATAGTTACCACATGCTCAAGCAAAAATCCAAAAAAAT
AAAGCCTACTTTTCAAAAGGNTTCAACTGCTTTTGTGACTTTTTCGAAGA
TGGAGTTGAAACGTTCAGAAGCGGAGAGCACCACCTCCACAATCTCCATC
GCTGATGATGAAGAAGAAGACAGTGATGAAAAACCTAAATTAAATGATTC
TCCATAAGATGAGTTTTGAGTTGGATTGATGTTTACCTACTAAACCGTTA
GGACACTTACTACTAGGGACCAAGTCAGTCTCAACTATTGATAGGGTTTT
CTTTCCTACTCATAGATTTGTGATATTTTCTGATACCATTAGACCGTTCT
GATATCTACGACGTGTTTCAGGCAAATTTTCGTTATTCTTTAATGAGATT
ATAAAAATATTGATATCACGAGGAAGAAGCTATTAAGCCTGCAAAAATGC
AAAAATTTCAGATGGAATTTGAAAATTTAGAATCTAAGACAAATTATTTT
TTACTATTTGAGATTTAGAATTCTTGATTCTCAATTGGGTTGTTGTTTAA
AATATCCTTTGGGTGACTGACACATGACTGACGGTTTCTGTAAATATTCT
TTAGCAAATTAATTTTTGAATTCACTAATATTATTGTAATGTTTTTGTTA
AGTTTAAAAATGGGGGATATGAAATTGCTAATGCAATAATAAAACAATCT
TTAACTGCTTTGAGTTAGGCTTCTGCTCATCCTCTAACGAAAAGATTTCT
TATAGGAAGTATATCTATAGAGGTCTGCGATTCAGACTAGCTTTCAGAAG
GTTCCTTCCTACTGTTACAACTACAAGGATTCTTTCATACAGTAAAATTC
GCAATTTTTGGCGTCCTTTGAGCTCAAAAGTTAGTTCTATTTTTTAGAAG
AACGTCTAAATTAGATTATGTGGTACATTGGACTTACGCTAATTCGATTC
AGTTCCTGTCATTTATAAACACTCGTAATCTATAAATAATTTGAATCTCT
CTTTAACTCGAGCTTACAACCGTATAAGTTTTTAAGTTTAGTCCAATAGT
TACCACATGCTCAAGCAAAAATCCAAAAAAATAAAGCCTACTTTTCAAAA
GGGGCATTAAAATTATATAATGAAATTAAGTTGAAGTCTAGAAGGAAATA
TTTATATAGCGCACGATTTGAAGTCACTTTATTTCCATAAAAGTTGGGTG
ATCTTTGTGGTAGTGTTGACATAGCCTGGATATCCAGGCTAGTGTTGGCA
TAATTGCTAGAAGAAAGCACTAATAGATTTAATCCATCGTCGTAAATCCT
AATCCATCATTTTCCTGGAAGATTCACTTCTAGCCTTCAACTTTACGTCA
TTGGCTTTAATGTAATTTCTTTTTTTTTGGTGGCAGTGTCAGTCGTAGTA
TTTTGACACGATCAATACATTGTTGGAAGAAAAATTTTGAATAGATATTT
GAAATTGAAAAAGGGCCCAAGAATTGTTTTACACTTTTCAGAAACTGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013139-exon-sc0000162-1575043694:198909..198947 | TCONS_00013139-exon-sc0000162-1575043694:198909..198947 | Clytia hemisphaerica | exon |
| TCONS_00013139-exon-sc0000162-1575043694:194449..198189 | TCONS_00013139-exon-sc0000162-1575043694:194449..198189 | Clytia hemisphaerica | exon |
| TCONS_00013139-exon-sc0000162-1510915933:198909..198947 | TCONS_00013139-exon-sc0000162-1510915933:198909..198947 | Clytia hemisphaerica | exon |
| TCONS_00013139-exon-sc0000162-1510915933:194449..198189 | TCONS_00013139-exon-sc0000162-1510915933:194449..198189 | Clytia hemisphaerica | exon |
| TCONS_00013139-exon-sc0000162-1491911889:198909..198947 | TCONS_00013139-exon-sc0000162-1491911889:198909..198947 | Clytia hemisphaerica | exon |
| TCONS_00013139-exon-sc0000162-1491911889:194449..198189 | TCONS_00013139-exon-sc0000162-1491911889:194449..198189 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000162 | supercontig | sc0000162:194449..198947 - |
Blast
BLAST of TCONS_00013139 vs. Swiss-Prot (Human)
Match: FLVC2 (Feline leukemia virus subgroup C receptor-related protein 2 OS=Homo sapiens GN=FLVCR2 PE=1 SV=1) HSP 1 Score: 156.762 bits (395), Expect = 1.100e-39 Identity = 110/428 (25.70%), Postives = 211/428 (49.30%), Query Frame = 2
Query: 125 LKVYPQRWLMLFIFSMTTLLNGSMFMGLSSVVEVVAPYYGVSAVHIEWLSNMFMVVFIFVAMPSAYIMSLFGVRTVXXXXXXXXXXXXXXXXXXXHQDKFQFVLIGQFFAAIAYGNMIQIPGKLSATWFPPRERGMSTSIGVFMNILGVAVGFVQPSYQIPVSYDPPVVYVGLKHFYTARMLMAFIIFFLTVVFYREKPPTPVSVIEG------KKHLEFFDSLKVLYKDFHFHLMAQAYGIYFGLFVAVSVVFSPLVSWQYGSKGDIQHLIGWMGFTCDIAAIISCLAIGFFLDRYSHHKAVAIFLNAGSMLLWLLFALILTQTKNFNLLFFVYVVYGTVG---IPYFASGVEQAAEMTSPVPEGTSSTVILLLGNIYGFVMIFTFGAMIED-GYPLTTLYLILGLYVLSTAFVTFSKMELKRSEAE 1378
+KV +RW ++ +FS ++ N ++ S+ + +YGVSA I+WLS +M+ +I + +P A+++ FG+RT+ + L ++ F ++GQ ++A ++ +P ++++ WF E + S+ VF N LG+A+GF+ P +P D + + + +A ++ L ++ ++EKP P S + + S+ L+K+ +F L+ YG+ G F A+S + + +V W Y + + G +G T IA ++ + G +LDR +K + + ++ L+ ++ T T N L+ V++ GT+G Y G E A E+T P EG SS ++ + ++G + + G +I++ G ++L + L L A F K +L+R +A
Sbjct: 78 IKVSRRRWAVVLVFSCYSMCNSFQWIQYGSINNIFMHFYGVSAFAIDWLSMCYMLTYIPLLLPVAWLLEKFGLRTIALTGSALNCLGAWVKLGSLKPHLFPVTVVGQLICSVAQVFILGMPSRIASVWFGANEVSTACSVAVFGNQLGIAIGFLVPPVLVPNIEDRDELAYHISIMFYIIGGVATLLLILVIIVFKEKPKYPPSRAQSLSYALTSPDASYLGSIARLFKNLNFVLLVITYGLNAGAFYALSTLLNRMVIWHYPGE---EVNAGRIGLTIVIAGMLGAVISGIWLDRSKTYKETTLVV----YIMTLVGMVVYTFTLNLGHLWVVFITAGTMGFFMTGYLPLGFEFAVELTYPESEGISSGLLNISAQVFGIIFTISQGQIIDNYGTKPGNIFLCVFL-TLGAALTAFIKADLRRQKAN 497
The following BLAST results are available for this feature:
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