TCONS_00013097 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013097
Unique NameTCONS_00013097
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2849

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013097 ID=TCONS_00013097|Name=TCONS_00013097|organism=Clytia hemisphaerica|type=transcript|length=2849bp
caataacaattttACCTCGAAATTGGATATATGTCCCCTAAAAATAATAC
TGCGGCGGAGAAGTACTTATGAAGTGGCGATTGAAATAtggaaaacaata
aaaatagaaGCAATCCTACAGAGGGTCAACAGCTTTTACAGACTGAAAAC
TGCAACAGAGGGGAGAGTCATACACGCAGCAAAATGAGGAATAGCAAGAT
TTTCAAAGAGATTGTGAGCCTTCTATACTGGACCATGTTGGCGGCTTGTA
CAGTGGGGCCGGGAACCGTAGTCACTTGCGCAAGGGCCGGTGCTGAATTT
GATTTGAACTTGATTTGGGCGTTGATTTTTGCTTCCATTCTCTCATATAC
TTTGCAAGAAGGTACAGCAAGACTGACAATAAAAAGTGGTAAAAGCCTTG
GTCAATGTCTTCAAGCAAAATATAAACATGGTCGACTGATATGGGGCGTG
GGCGTTATTTGCTGGGTGGTGGCGGTCTGTGTATTTCTTGGAAACACTTT
TTATTCATGCAACAACTGGGCAGGTGGCATGTCCGCCATCTACGCACTAC
CCGGTGCTGGAAATACGGTCGGACTACGTGTTGGTGCTTGTTTTGGGTAT
GGTTTCATTGTCATCGCAATTTCATTGGCTGATAAAACGGATTCACTTGG
AGTAGGACTTGGTGTAGTTATGATTGCCATGGTGATATTATTCCTGGTAG
TTGTCGTTAAACTAGGTTTAGATGGTGCACGATTCGCTAAAGGATTGCTG
CCGATCAGTATGCCAGCAGGATCCACCAACATTGTTTTAAGCTTGGTAGG
AACAACTGCTATCGGCTTCAACCTATTCTTAGGTGGACAGATGGCAGAAG
GGAAAACGCTTCCACAAGCACAAAGAGGGATTGCATTTTCAACAGTAATG
ACTCTGATTGTGTCAGTCTTAATCATGATTGTTGGAGATGGTACAGAGTT
ACAGAAAGGGTTATTCACCATCGCCAACTTGTCTGGTACTGTAGAAAATC
TGACTGGAGGTGCTGGTCTTTGGATATTTTGTCTGGGCTTCATTGCAGCC
GCTTTAAGTTCCATGTTAGTGTGCCCGTTAGGATCAGTGATGACTTGTGA
AAGCGTTTTCAATATTTATGCGGAAAATGACGAGCAGTCGGCAATGGAGT
ATAAGAGCACTGGAGAGAAGGAACAGGATCAAGGTACAAAAGAAGGGGAG
CAAGTTATTCAAATCCAAAGTGAAGGCCAAGAAAGATTGTTTCCCAAGAA
ATATGCACGTGCTTTGATGGTCATAATGGTATCCGTAGCTGTGATTGTGA
ACGCTGCAAATGCACCACCTGTTAAAGTCATCTTGGTCGCTCAAGTGTTC
AATGGTTGTCTTCTCCCCTTCTTTTCTATCTGTCTATTGATCTGTTTGAA
CGATCCACAATTTATGGCATCTGCTCCACAAAAAGGATGGTCCAATTGCT
TCCTCACTACTGCTGTCATTATAACTTTGTTCCTGACCGCAAATTCCATG
ATTCAAAACCTCTTCGGATGGACTACAACTAATGGTCATATCTTGAAATC
CACATTTGACACCatcaaatttagtttttctggAGTGATTGCGGTGGCGA
TTAtgctttgtttgtttttgtgtacTAGTCTAGGAAAGAATGTTTGCAAA
AGTTTAAATTGCTTTAATCGTGTAGAAGACCTAAGAACATAAAAGATGAT
GATGGTGAATTTTATTAGTAACACTATAGAACCCCCTCTAATATATCTAT
ACATGACAAAAGAAATACAAATTATCCTCGACTCTGGTAGTCATTAAAAC
CTACAATGGCGCAAAGAGCGACAAATACCACGAGCGAAAAACCCACGTGT
CCGGAAAAAGTAGAACAGATTTTATTTAAAGTATAATCATCAGAACTCAT
TATTTTACTTGAATTCAGAACAATTGAACTAATGGTATGGAATTTCTTTG
TCGAATCGATAAATACTAAAagtatttttgtttacttaaatTTTGTTCCA
ATATTTCCCCTAACCCTATAGACACACAAAGATagaattttaagaaagaa
atccttaatttttaaaattgcattttcgattttcatttttaagctCAATG
GCCTATACTTTAGACGTAAACAATAAGAGTCATAGGAAAAATATCTAGCT
CATTCATAAATTCTCTagataaatacaaaaatatacaaaaaacaaatata
aacctTCCTTTTTGATGACCATCCCACCCTTTTTTCGGGAAATGTACGTA
CCCTAGTAAAACATTTTTCAGCGCTGGCATTTAGTTAAATTTTCAGTGAA
ATAAGTCTTTTGAGAGTCTTTTAATGGCCAATANcaaatttagtttttct
ggAGTGATTGCGGTGGCGATTAtgctttgtttgtttttgtgtacTAGTCT
AGGAAAGAATGTTTGCAAAAGTTTAAATTGCTTTAATCGTGTAGAAGACC
TAAGAACATAAAAGATGATGATGGTGAATTTTATTAGTAACACTATAGAA
CCCCCTTTAATGTATCTATACATGACAAAAGAAATACAAATTATCCTCGA
CTCTGGTAGTCATTAAAACCTACAATGGCGCGAAGAGCGACAAATACCAC
GAGCGAAAAACCCACGTGTCCGGAAAAAGTAGAACAGATTTTATTTAAAG
TATAATCATCAGAACTCATTATTTTACTTGAATTCAGAACAATTGAACTA
ATGGTATGGAATTTCTTTGTCGAATCGATAAATACTAAAagtatttttgt
ttacttaaatTTTGTTCCAATATTTCCCCTAACCCTATAGACACACAAAG
ATagaattttaagaaagaaatccttaatttttaaaattgcattttcgat
Run BLAST on NCBI

transcript from alignment at sc0000162:265687..270834+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013097 ID=TCONS_00013097|Name=TCONS_00013097|organism=Clytia hemisphaerica|type=transcript|length=5148bp|location=Sequence derived from alignment at sc0000162:265687..270834+ (Clytia hemisphaerica)
caataacaattttACCTCGAAATTGGATATATGTCCCCTAAAAATAATAC
TGCGGCGGAGAAGTACTTATGAAGTGGCGATTGAAATAtggaaaacaata
aaaatagaaGCAATCCTACAGAGGGTCAACAGCTTTTACAGACTGAAAAC
TGCAACAGAGGGGAGAGTCATACACGCAGCAAAATGAGGAATAGCAAGAT
TTTCAAAGAGATTGTGAGCCTTCTATACTGGACCATGTTGGCGGCTTGTA
CAGTGGGGCCGGGAACCGTAGTCACTTGCGCAAGGGCCGGTGCTGAATTT
GATTTGAACTTGATTTGGGCGTTGATTTTTGCTTCCATTCTCTCATATAC
TTTGCAAGAAGGTAAAGAATTTGAGCACAGACAGAAATGATGAACGTCGT
TTTACAGAAACACATTTTCTTTTCCATCGtctattctattctatttaGGG
TGGAGTTATAACCATGCCAACCCTCTTAGCTTTCATTACACTCGGAACAT
TGACAAGTTACTTGTTAACTTTGCTAACTTATCTGTACGTAATATCATTA
TCCACCATTAGGTACAGCAAGACTGACAATAAAAAGTGGTAAAAGCCTTG
GTCAATGTCTTCAAGCAAAATATAAACATGGTCGACTGATATGGGGCGTG
GGCGTTATTTGCTGGGTGGTGGCGGTCTGTGTATTTCTTGGTAAGTTGCC
TCAAAAAATGTTTAGCNCTAAAAATAATACTGCGGCGGAGAAGTACTTAT
GAAGTGGCGATTGAAATAtggaaaacaataaaaatagaaGCAATCCTACA
GAGGGTCAACAGCTTTTACAGACTGAAAACTGCAACAGAGGGGAGAGTCA
TACACGCAGCAAAATGAGGAATAGCAAGATTTTCAAAGAGATTGTGAGCC
TTCTATACTGGACCATGTTGGCGGCTTGTACAGTGGGGCCCGGAACCGTA
GTCACTTGCGCAAGGGCCGGTGCTGAATTTGATTTGAACTTGATTTGGGC
GTTGATTTTCGCTTCCATTCTCTCATATACTTTGCAGGAAGGTAAAGAAT
TTGAGCATGGACAAAAATGATAAACGTTATTTAACCTAAACACGTTTCTT
TTACATCATCTATTCTATTCAATTTAGGGTGGAGTAATAACCATGCCAAC
CTCTTAGCTTTCGTTACACTCGGAACATTGACAAGTTACTTGTTAACTTT
GCTAACTTTTATCTGTACGTAATATCATTATCCACCTTTAGGTACAGCAA
GACTGACAATAAAAAGTGGTAAAAGCCTTGGTCAATGTCTTCAAGCAAAA
TATAAACATGGTCGACTGATATGGGGCGTGGGCGTTATTTGCTGGGTGGT
GGCGGTCTGTGTATTTCTTGGTAAGTTGCCTCAAAAAATGTTTAGCCACC
TCGGTTTAAAGCtcattcgattgacaaaaagGCAAAAAGTCATTGCACTA
TTTCAATTATttatttcaattcatttttcTCCAGTTCCCGATTTGTTCTG
TTCTTGTTCAATTCCTCAGCCTGTCTAAAAGCTGCTGATTTTCTTTTCCT
TCATACTATAGGAAACACTTTTTATTCATGCAACAACTGGGCAGGTGGCA
TGTCCGCCATCTACGCACTACCCGGTGCTGGAAATACGGTCGGACTACGT
GTTGGTGCTTGTTTTGGGTATGGTTTCATTGTCATCGCAATTTCATTGGC
TGATAAAACGGATTCACTTGGAGTAGGACTTGGTGTAGTTATGATTGCCA
TGGTGATATTATTCCTGGTAGTTGTCGTTAAACTAGGTAAATTTTATTAT
CTCATGTTACAAGCCTTGAGAAGAGATTATAATTCAAAACAGCTAATTGG
AAGACACTTTTTGTCCTTTAACTATTATTCTTTGCCAAATCATGACTCAT
AGATTAATTATGTATGTGCAGTAAACAATAACCTTCTAGCAAGTTAAACC
TTGATGCTTGTTTCCCCTCCAAATCTTATTACTTGCTAACACACTTTCCG
TGGTGAAGCATAAACAATTACATTACATGAAAACATGGTTCTTAATTTTg
atgacaaaaattctttctATACCACATTATANAAGGCAAAAAGTCATTGC
ACTATTTCAATTATttatttcaattcatttttcTCCAGTTCCCGATTTGT
TCTGTTCTTGTTCAATTCCTCAGCCTGTCTAAAAGCTGCTGATTTTCTTT
TCCTTCATACTATAGGAAACACTTTTTATTCATGCAACAACTGGGCAGGT
GGCATGTCCGCCATCTACGCACTACCCGGTGCTGGAAATACGGTCGGACT
ACGTGTTGGTGCTTGTTTTGGGTATGGTTTCATTGTCATCGCAATTTCAT
TGGCTGATAAAACGGATTCACTTGGAGTAGGACTTGGTGTAGTTATGATT
GCCATGGTGATATTATTCCTGGTAGTTGTCGTTAAACTAGGTAAATTTTA
TTATCTCATGTTACAAGCCTTGAGAAGAGATTATAATTCAAAACAGCTAA
TTGGAAGACACTTTTTGTCCTTTAACTATTATTCTTTGCCAAATCATGAC
TCATAGATTAATTATGTATGTGCAGTAAACAATAACCTTCTAGCAAGTTA
AACCTTGATGCTTGTTTCCCCTCCAAATCTTATTACTTGCTAACACACTT
TCCGTGGTGAAGCATAAACAATTACATTACATGAAAACATGGTTCTTAAT
TTTgatgacaaaaattctttctATACCACATTATATCATTTCCATAGGTT
TAGATGGTGCACGATTCGCTAAAGGATTGCTGCCGATCAGTATGCCAGCA
GGATCCACCAACATTGTTTTAAGCTTGGTAGGAACAACTGCTATCGGCTT
CAACCTATTCTTAGGTGGACAGATGGCAGAAGGGAAAACGCTTCCACAAG
CACAAAGAGGGATTGCATTTTCAACAGTAATGACTCTGATTGTGTCAGTC
TTAATCATGATTGTTGGAGATGGTACAGAGTTACAGAAAGGGTTATTCAC
CATCGCCAACTTGTCTGGTACTGTAGAAAATCTGACTGGAGGTGCTGGTC
TTTGGATATTTTGTCTGGGCTTCATTGCAGCCGCTTTAAGTTCCATGTTA
GTGTGCCCGTTAGGATCAGTGATGACTTGTGAAAGCGTTTTCAATATTTA
TGCGGAAAATGACGAGCAGTCGGCAATGGAGTATAAGAGCACTGGAGAGA
AGGAACAGGATCAAGGTACAAAAGAAGGGGAGCAAGTTATTCAAATCCAA
AGTGAAGGCCAAGAAAGATTGTTTCCCAAGAAATATGCACGTGCTTTGAT
GGTCATAATGGTATCCGTAGCTGTGATTGTGAACGCTGCAAATGCACCAC
CTGTTAAAGTCATCTTGGTCGCTCAAGTAAggctttttcttatttttcta
aactAATTTTGACACAAGGCATACGTACTGATAGCTTCTAAGATCTTAAT
AAGGCCATCAGgtgttaaattttgaaaataataaaaacctACTTACTTGA
AAACGTTCTCCAACAACTGATTTGTGCGTCAACCTGAAGTAAGAAATAAG
CTGGAAAATTATCTTATCTACACTAAGCAACTGAAGTTTATATAATGTTC
ATGGATTTTTTCATTAATTGAAGTACCTTTGAATCTAATTTAGGTGTTCA
ATGGTTGTCTTCTCCCCTTCTTTTCTATCTGTCTATTGATCTGTTTGAAC
GATCCACAATTTATGGCATCTGCTCCACAAAAAGGATGGTCCAATTGCTT
CCTCACTACTGCTGTCATTATAACTTTGTTCCTGACCGCAAATTCCATGA
TTCAAAACCTCTTCGGATGGACTACAACTAATGGTCATATCTTGAAATCC
ACATTTGACACCatcaaatttagtttttctggAGTGATTGCGGTGGCGAT
TAtgctttgtttgtttttgtgtacTAGTCTAGGAAAGAATGTTTGCAAAA
GTTTAAATTGCTTTAATCGTGTAGAAGACCTAAGAACATAAAAGATGATG
ATGGTGAATTTTATTAGTAACACTATAGAACCCCCTCTAATATATCTATA
CATGACAAAAGAAATACAAATTATCCTCGACTCTGGTAGTCATTAAAACC
TACAATGGCGCAAAGAGCGACAAATACCACGAGCGAAAAACCCACGTGTC
CGGAAAAAGTAGAACAGATTTTATTTAAAGTATAATCATCAGAACTCATT
ATTTTACTTGAATTCAGAACAATTGAACTAATGGTATGGAATTTCTTTGT
CGAATCGATAAATACTAAAagtatttttgtttacttaaatTTTGTTCCAA
TATTTCCCCTAACCCTATAGACACACAAAGATagaattttaagaaagaaa
tccttaatttttaaaattgcattttcgattttcatttttaagctCAATGG
CCTATACTTTAGACGTAAACAATAAGAGTCATAGGAAAAATATCTAGCTC
ATTCATAAATTCTCTagataaatacaaaaatatacaaaaaacaaatataa
acctTCCTTTTTGATGACCATCCCACCCTTTTTTCGGGAAATGTACGTAC
CCTAGTAAAACATTTTTCAGCGCTGGCATTTAGTTAAATTTTCAGTGAAA
TAAGTCTTTTGAGAGTCTTTTAATGGCCAATANcaaatttagtttttctg
gAGTGATTGCGGTGGCGATTAtgctttgtttgtttttgtgtacTAGTCTA
GGAAAGAATGTTTGCAAAAGTTTAAATTGCTTTAATCGTGTAGAAGACCT
AAGAACATAAAAGATGATGATGGTGAATTTTATTAGTAACACTATAGAAC
CCCCTTTAATGTATCTATACATGACAAAAGAAATACAAATTATCCTCGAC
TCTGGTAGTCATTAAAACCTACAATGGCGCGAAGAGCGACAAATACCACG
AGCGAAAAACCCACGTGTCCGGAAAAAGTAGAACAGATTTTATTTAAAGT
ATAATCATCAGAACTCATTATTTTACTTGAATTCAGAACAATTGAACTAA
TGGTATGGAATTTCTTTGTCGAATCGATAAATACTAAAagtatttttgtt
tacttaaatTTTGTTCCAATATTTCCCCTAACCCTATAGACACACAAAGA
Tagaattttaagaaagaaatccttaatttttaaaattgcattttcgat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007328XLOC_007328Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013097-exon-sc0000162-1491911889:265687..266047TCONS_00013097-exon-sc0000162-1491911889:265687..266047Clytia hemisphaericaexon
TCONS_00013097-exon-sc0000162-1510915933:265687..266047TCONS_00013097-exon-sc0000162-1510915933:265687..266047Clytia hemisphaericaexon
TCONS_00013097-exon-sc0000162-1575043694:265687..266047TCONS_00013097-exon-sc0000162-1575043694:265687..266047Clytia hemisphaericaexon
TCONS_00013097-exon-sc0000162-1491911889:266248..266376TCONS_00013097-exon-sc0000162-1491911889:266248..266376Clytia hemisphaericaexon
TCONS_00013097-exon-sc0000162-1510915933:266248..266376TCONS_00013097-exon-sc0000162-1510915933:266248..266376Clytia hemisphaericaexon
TCONS_00013097-exon-sc0000162-1575043694:266248..266376TCONS_00013097-exon-sc0000162-1575043694:266248..266376Clytia hemisphaericaexon
TCONS_00013097-exon-sc0000162-1491911889:267248..267280TCONS_00013097-exon-sc0000162-1491911889:267248..267280Clytia hemisphaericaexon
TCONS_00013097-exon-sc0000162-1510915933:267248..267280TCONS_00013097-exon-sc0000162-1510915933:267248..267280Clytia hemisphaericaexon
TCONS_00013097-exon-sc0000162-1575043694:267248..267280TCONS_00013097-exon-sc0000162-1575043694:267248..267280Clytia hemisphaericaexon
TCONS_00013097-exon-sc0000162-1491911889:267935..268126TCONS_00013097-exon-sc0000162-1491911889:267935..268126Clytia hemisphaericaexon
TCONS_00013097-exon-sc0000162-1510915933:267935..268126TCONS_00013097-exon-sc0000162-1510915933:267935..268126Clytia hemisphaericaexon
TCONS_00013097-exon-sc0000162-1575043694:267935..268126TCONS_00013097-exon-sc0000162-1575043694:267935..268126Clytia hemisphaericaexon
TCONS_00013097-exon-sc0000162-1491911889:268434..269062TCONS_00013097-exon-sc0000162-1491911889:268434..269062Clytia hemisphaericaexon
TCONS_00013097-exon-sc0000162-1510915933:268434..269062TCONS_00013097-exon-sc0000162-1510915933:268434..269062Clytia hemisphaericaexon
TCONS_00013097-exon-sc0000162-1575043694:268434..269062TCONS_00013097-exon-sc0000162-1575043694:268434..269062Clytia hemisphaericaexon
TCONS_00013097-exon-sc0000162-1491911889:269330..270834TCONS_00013097-exon-sc0000162-1491911889:269330..270834Clytia hemisphaericaexon
TCONS_00013097-exon-sc0000162-1510915933:269330..270834TCONS_00013097-exon-sc0000162-1510915933:269330..270834Clytia hemisphaericaexon
TCONS_00013097-exon-sc0000162-1575043694:269330..270834TCONS_00013097-exon-sc0000162-1575043694:269330..270834Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000162supercontigsc0000162:265687..270834 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.139793	0.0734728	0.0186606	0	0	0.0524427	0	0.0297277	0	0.18143	8.20641	8.91192	7.04503	16.3835	0.755877	0.69795	2.62138	2.02412	0.64129	0.573465	0.261949	0.199738	0.267022	0	0.0707373	0.132057	0	0.166022
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013097 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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