TCONS_00013075 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013075
Unique NameTCONS_00013075
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1406

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013075 ID=TCONS_00013075|Name=TCONS_00013075|organism=Clytia hemisphaerica|type=transcript|length=1406bp
TGTAAACTCAGTGCAGTGGACGTGTTGGAAATGAGAGACCCATTAGAAAG
CTAAGGAAATGGTCGACtcatgtttttcatatttttcattgtaGGTCAAC
TGACGGTTCTGGCATGTTCAATTGGAGGTTTAAATACAATTTCAAATATC
ACCAAGCTAAAAGACAAATCGTCCGCAAAGAAACGAACGTAGCATTTGAA
AAGACAGCTCTATATTATCGACCGGAGCTCGTGATTGAATGTTTAGAGAA
CGACCTTTTCTCACACGATGTTCTAGGTGAGCGTCGAATCAACTTGCTGA
AAGTCCCACCATATTTCGGCAAACCCTGGGGATGGTCAATGGGTAAATAT
AAAGAACTAGCGAAGAACGAGAATAGGACACCATCTTTGTTCAACTGCTC
CACCATTCGTGGATGGTGGCCCTTGGAAACGGATGACCCTGAACGAGAAG
ACGGTGATGGTGGTCGAGTTGAATTGGAATTGGAGTTGTTAACGAAAGAA
GAAGCGGACGAGAACCCTGTCGGTGAACAACGAAATGAACCTCATGCTCT
CTCAAAACCTAAACGCCCTCAAGAGAGTATGCGGTTATTGATCGGCCCTC
TTCGAACACTCAGAATTTTCGTCAATTCACATCGTGGTCTTATTTGTAAA
GTAGTCTTCTTGTTGCTGCTGGTTATTCTGATGCTCCTCTTTCTATACGC
CATGCCTGGAGCTGCTGTCCAAAAGATGTTTGGTGCTCGTTGAGATAAAT
GTCGGGTTTTATTGCAAGTATTTATCTCGATTAGTGCATGAATTTAATCA
AGGCTTTGTTATGGTAATTTGTTGACCAAGCATCAAAGAGCAAAAAGAAA
ATGTACTAACGAGACATCAGACTGTGTCAATATAGTTCCCTGTAACTTAT
CAATCATGCCTCCTCCCCCTGTACTGATCCTTACAAAGACTACCTCAGCT
GAGCTCAGTTGATCTATGTCATTTTGACGCTCTTTGTCAATTATGGGGTG
TAATCTAACAAAACGGcgcaaattttaaaagaatttaaaaccaATTAGAT
TTTTGATGAACGAACGAatgtatatttttgaattttttcctttaaacCTA
CATACTAAAATACTATTTATAAATTATTTACAAATGAAATgtcatatata
tatattttgaatGCATTGTTTATTGTATATTTTATATGATTTTTACGGGG
AAATCACGAGTCATTAAACCAACCAGGATTCGCTTccagtaaaaaaataa
tttatataggggtcattttgaaatagaaagttttttaaaaatatttttgt
actaTATCTTGAGGGTTGATTTGGTGTTGGACGTGTGTATATGTATTTGG
ATGACCATATATTGACcctaaaaaatgaaacaaaataattgaatatGAAT
TATTAA
Run BLAST on NCBI

protein sequence of TCONS_00013075-protein

>TCONS_00013075-protein ID=TCONS_00013075-protein|Name=TCONS_00013075-protein|organism=Clytia hemisphaerica|type=polypeptide|length=209bp
MFNWRFKYNFKYHQAKRQIVRKETNVAFEKTALYYRPELVIECLENDLFS
HDVLGERRINLLKVPPYFGKPWGWSMGKYKELAKNENRTPSLFNCSTIRG
WWPLETDDPEREDGDGGRVELELELLTKEEADENPVGEQRNEPHALSKPK
RPQESMRLLIGPLRTLRIFVNSHRGLICKVVFLLLLVILMLLFLYAMPGA
AVQKMFGAR
Run BLAST on NCBI

transcript from alignment at sc0000162:104867..109062+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013075 ID=TCONS_00013075|Name=TCONS_00013075|organism=Clytia hemisphaerica|type=transcript|length=4196bp|location=Sequence derived from alignment at sc0000162:104867..109062+ (Clytia hemisphaerica)
TGTAAACTCAGTGCAGTGGACGTGTTGGAAATGAGAGACCCATTAGAAAG CTAAGGAAATGGTCGACtcatgtttttcatatttttcattgtaGGTCAAC TGACGGTTCTGGCATGTTCAATTGGAGGTTTAAATACAATTTCAAATATC ACCAAGCTAAAAGACAAATCGTCCGCAAAGAAACGGTCAGTTGAAAGTTC CTTTGTTCGTTTTTTCATTTAGGTCTGCTCGTCTTCTTTTAATCAAAGGG TCTGCGTTATCAATATATTGCCAATTGGTAAATACTAATGGTAGACGAAT AGACTCTCATCTTTATCAGTTTCTCGGTGCAACCTGATATAAAAGTTCGA ATaatgttggaaaattttcaaaattttaataaacggggggaccaaATTTC CGGAGGGGttagaaattgtacttctgaaaacccaaaataaggtaaatata ggctaaaatcaggttaTTTAGAGctaaataaggggccttctctttggcag ctgaaaatattcttgaaaatttataaacaGGGGGTGTcctaattttcgaa aaattaacaagcagggggcccgtttatttggaacctaagagaaGCTTTTa gtactttaagggcagaaactttcgtgggcagaaactttcgcactttcgcg tttttcgcgattttgatcctttttcgagaaagtttctgccaggtaagaaa ttaaacctgaaaaacgcgaaagtttttttcgcgaaaaataaactttccta ctcagttttgcactgtttgctaaatttttgcgtgtttttgttaccaaaaa aggtaaattttatatgaattcgcgaaagttctatctgtaaaatttcggct aaaaccataattcgcgaaacttaaattcgctaaatttcgcgactttttga cttcgcgaaactttctgcccgtgaaactttctgcccttaaagtatcaGTA CTTATTTCAATGTTTATTCTTTTGCAGAACGTAGCATTTGAAAAGACAGC TCTATATTATCGACCGGAGCTCGTGATTGAATGTTTAGAGAACGACCTTT TCTCACACGATGTTCTAGGTATGTATTGTACGGGATTCgaagatttgaaa actttttaaaaaaaagaaaagtttaaatTACATAGACATAGTTGTGAAGC TACGAAGAGTTATTATTGTTAATACTTTCTACTCACAATACTTTACCGGT AGATAATTCGTTGGTGAAAAATATTCGCCGGTTAAAAATATTCGTCTGtc aaaaattccgtcaccgagcgatttttttgtcattttctacCGAAGAATTT CTTACCGAAAAAGgtatatttttaataaaatttctaaccGTAGGTGAGCG TCGAATCAACTTGCTGAAAGTCCCACCATATTTCGGCAAACCCTGGGGAT GGTCAATGGGTAAATATAAAGAACTAGCGAAGAACGAGAATAGGACACCA TCTTTGTTCAACTGCTCCACCATTCGTGGATGGTGGCCCTTGGAAACGGA TGACCCTGAACGAGAAGACGGTGATGGTGTAAGTGCCCAGCTGGtgcaca atgttgtttcaacgttcatcgaATATTCACAACGTCAATATAACGTtgga tgaacattgaaacaacgtcttgtgccagctgggtgggATTTTGAACGTGT CTCTTACAAGATATTTTACACGAATGGCTAAAAGAAATCCAGTCATAAGA TATATGTGGGCCCAGTCCATTCGCTTTATGCGAGCGCTATTTTATGTTAT CACGTGTGAACCATGTAAGCATCATTTGACTAATCTCCATTGTAGTGGTT TCCACATGGAATATCAGAAAAGTGCTCACTTAAGGCGAATGGACTTTAGG CTTGAAAAAGGGAATATGTAAAACTTTAAAGGAGTGGGCGGTCAAGACTT ATCAATGAGAATAAGTGAATTCAatatattgatttgattttcttttgtag GGTCGAGTTGAATTGGAATTGGAGTTGTTAACGAAAGAAGAAGCGGACGA GAACCCTGTCGGTGAACAACGAAATGAACCTCATGCTCTCTCAAAACCTA AGTAAGTTCGCTAATCACTAGCTCTGCTGGTTTAACTCACCAAGTGCCTT AACACACTGTTGATTTGGCTCTTTCTAGGAGGTGTTAGATTTGGGGAAGC CTGAGAGTAATATTTTGCGTTGTCACATCATCTCAACACCGGACGATATG TTACATGACATGGAATCTCGTTTATGACATTAATTGGTTTGTTGATCATC CAAGTTGATCGTTAAAATTCTTCTAGTTGACTTTTTGACTTATTGGTTAA CTTACCGTTGTTGGATATTGTTGATTGTAGGATTATCCCTTCATAAAGGA AATATAAATTGTAGATCTGATGAGTACCTGTAAATAATTCCAAATCAGAA GCTCGAAATCACAATTTTCTCCTTCCTTTTTTAGACGCCCTCAAGAGAGT ATGCGGTTATTGATCGGCCCTCTTCGAACACTCAGAATTTTCGTCAATTC ACATCGTGGTCTTATTTGTAAAGTAGTCTTCTTGTTGCTGCTGGTTATTC TGATGCTCCTCTTTCTATACGCCATGCCTGTGAGTAGACTTCTGTgagga ttttgaattttatgagGATAGACATCCTTGTCTCTTTGAGGAAGCTCAAT TCTGAATGGGAATAGAAACCACCTGTTTTAATGGTAGGGATTTCAAATTC TATTCTACTTGTTATTGATGTTCAAAAATCTATCCTTTGAGAGGGGTCCC AGCCGGTCTGTGGCACGGGttgtataagaaaatttttcgccagaaattga aattttttacgTACCGAAATTCTCTCTGTCATTTCAACATGACTATTTGC CTAATTTAGAGTGAATTTTCTTCGCCTTTTGATTTCATCAGATATTTCAT TGATCAATTTTATTATTGGGTATGTGATGTGTGTCAATATAAGTAAGGAA TCTCGAGTAGCATTTTGTCCATTCCACTTGCGGATGGAGAAGGTTTcgta atttttctttctaataTCGAGTTCGATGTCCTGTTTTATCTATTCCCCGA ATGCGTGCATTACCTCAAATTTCTCTTCATTTTCGTAATCATAGGGAGCT GCTGTCCAAAAGATGTTTGGTGCTCGTTGAGGTACTTGATAAGAAAATGT CGAAATATAGAATGGATGAAACTAAAAGAACTTAATAAATGGATCATTCT TTCTCTTGGATTTCCTCTACAAGTTACTCAGTCCaacaaaaatacaaaca aacaaattgtTTCCCATGGAAATCGAGATACGAGAACATTTCTGAAACAT TACTTCCTTTATCTTAACTCATCCTTTGGTTGAGTTATGTAACGCCAATT TTCACGTATTATGAATGTCGTTTCAACATTCATTCCTGAACATTGGGTAG ATATCTCGACTTTCAATCTTGTAGCTTGTTAAGAGCGGAAATTAAAGTAA TTAGGGTAGGAGATTGCGTTTTAATTGGCCACCTAGAGTTGTTTTTGTAA TTCGTAAATGCATTCTATTTATTCTTCATTATAGATAAATGTCGGGTTTT ATTGCAAGTATTTATCTCGATTAGTGCATGAATTTAATCAAGGCTTTGTT ATGGTAATTTGTTGACCAAGCATCAAAGAGCAAAAAGAAAATGTACTAAC GAGACATCAGACTGTGTCAATATAGTTCCCTGTAACTTATCAATCATGCC TCCTCCCCCTGTACTGATCCTTACAAAGACTACCTCAGCTGAGCTCAGTT GATCTATGTCATTTTGACGCTCTTTGTCAATTATGGGGTGTAATCTAACA AAACGGcgcaaattttaaaagaatttaaaaccaATTAGATTTTTGATGAA CGAACGAatgtatatttttgaattttttcctttaaacCTACATACTAAAA TACTATTTATAAATTATTTACAAATGAAATgtcatatatatatattttga atGCATTGTTTATTGTATATTTTATATGATTTTTACGGGGAAATCACGAG TCATTAAACCAACCAGGATTCGCTTccagtaaaaaaataatttatatagg ggtcattttgaaatagaaagttttttaaaaatatttttgtactaTATCTT GAGGGTTGATTTGGTGTTGGACGTGTGTATATGTATTTGGATGACCATAT ATTGACcctaaaaaatgaaacaaaataattgaatatGAATTATTAA

Coding sequence (CDS) from alignment at sc0000162:104867..109062+

>TCONS_00013075 ID=TCONS_00013075|Name=TCONS_00013075|organism=Clytia hemisphaerica|type=CDS|length=3780bp|location=Sequence derived from alignment at sc0000162:104867..109062+ (Clytia hemisphaerica)
ATGTTCAATTGGAGGTTTAAATACAATTTCAAATATCACCAAGCTAAAAG
ACAAATCGTCCGCAAAGAAACGAACGTAGCATTTGAAAAGACAGCTCTAT
ATTATCGACCGGAGCTCGTGATTGAATGTTTAGAGAACGACCTTTTCTCA
CACGATGTTCTAGGTGAGCGTCGAATCAACTTGCTGAAAGTCCCACCATA
TTTCGGCAAACCCTGGGGATGGTCAATGGGTAAATATAAAGAACTAGCGA
AGAACGAGAATAGGACACCATCTTTGTTCAACTGCTCCACCATTCGTGGA
TGGTGGCCCTTGGAAACGGATGACCCTGAACGAGAAGACGGTGATGGTGG
TCGAGTTGAATTGGAATTGGAGTTGTTAACGAAAGAAGAAGCGGACGAGA
ACCCTGTCGGTGAACAACGAAATGAACCTCATGCTCTCTCAAAACCTAAA
CGCCCTCAAGAGAGTATGCGGTTATTGATCGGCCCTCTTCGAACACTCAG
AATTTTCGTCAATTCACATCGTGGTCTTATTTGTAAAGTAGTCTTCTTGT
TGCTGCTGGTTATTCTGATGCTCCTCTTTCTATACGCCATGCCTGGAGCT
GCTGTCCAAAAGATGTTTGGTGCTCGTTGAATGTTCAATTGGAGGTTTAA
ATACAATTTCAAATATCACCAAGCTAAAAGACAAATCGTCCGCAAAGAAA
CGAACGTAGCATTTGAAAAGACAGCTCTATATTATCGACCGGAGCTCGTG
ATTGAATGTTTAGAGAACGACCTTTTCTCACACGATGTTCTAGGTGAGCG
TCGAATCAACTTGCTGAAAGTCCCACCATATTTCGGCAAACCCTGGGGAT
GGTCAATGGGTAAATATAAAGAACTAGCGAAGAACGAGAATAGGACACCA
TCTTTGTTCAACTGCTCCACCATTCGTGGATGGTGGCCCTTGGAAACGGA
TGACCCTGAACGAGAAGACGGTGATGGTGGTCGAGTTGAATTGGAATTGG
AGTTGTTAACGAAAGAAGAAGCGGACGAGAACCCTGTCGGTGAACAACGA
AATGAACCTCATGCTCTCTCAAAACCTAAACGCCCTCAAGAGAGTATGCG
GTTATTGATCGGCCCTCTTCGAACACTCAGAATTTTCGTCAATTCACATC
GTGGTCTTATTTGTAAAGTAGTCTTCTTGTTGCTGCTGGTTATTCTGATG
CTCCTCTTTCTATACGCCATGCCTGGAGCTGCTGTCCAAAAGATGTTTGG
TGCTCGTTGAATGTTCAATTGGAGGTTTAAATACAATTTCAAATATCACC
AAGCTAAAAGACAAATCGTCCGCAAAGAAACGAACGTAGCATTTGAAAAG
ACAGCTCTATATTATCGACCGGAGCTCGTGATTGAATGTTTAGAGAACGA
CCTTTTCTCACACGATGTTCTAGGTGAGCGTCGAATCAACTTGCTGAAAG
TCCCACCATATTTCGGCAAACCCTGGGGATGGTCAATGGGTAAATATAAA
GAACTAGCGAAGAACGAGAATAGGACACCATCTTTGTTCAACTGCTCCAC
CATTCGTGGATGGTGGCCCTTGGAAACGGATGACCCTGAACGAGAAGACG
GTGATGGTGGTCGAGTTGAATTGGAATTGGAGTTGTTAACGAAAGAAGAA
GCGGACGAGAACCCTGTCGGTGAACAACGAAATGAACCTCATGCTCTCTC
AAAACCTAAACGCCCTCAAGAGAGTATGCGGTTATTGATCGGCCCTCTTC
GAACACTCAGAATTTTCGTCAATTCACATCGTGGTCTTATTTGTAAAGTA
GTCTTCTTGTTGCTGCTGGTTATTCTGATGCTCCTCTTTCTATACGCCAT
GCCTGGAGCTGCTGTCCAAAAGATGTTTGGTGCTCGTTGAATGTTCAATT
GGAGGTTTAAATACAATTTCAAATATCACCAAGCTAAAAGACAAATCGTC
CGCAAAGAAACGAACGTAGCATTTGAAAAGACAGCTCTATATTATCGACC
GGAGCTCGTGATTGAATGTTTAGAGAACGACCTTTTCTCACACGATGTTC
TAGGTGAGCGTCGAATCAACTTGCTGAAAGTCCCACCATATTTCGGCAAA
CCCTGGGGATGGTCAATGGGTAAATATAAAGAACTAGCGAAGAACGAGAA
TAGGACACCATCTTTGTTCAACTGCTCCACCATTCGTGGATGGTGGCCCT
TGGAAACGGATGACCCTGAACGAGAAGACGGTGATGGTGGTCGAGTTGAA
TTGGAATTGGAGTTGTTAACGAAAGAAGAAGCGGACGAGAACCCTGTCGG
TGAACAACGAAATGAACCTCATGCTCTCTCAAAACCTAAACGCCCTCAAG
AGAGTATGCGGTTATTGATCGGCCCTCTTCGAACACTCAGAATTTTCGTC
AATTCACATCGTGGTCTTATTTGTAAAGTAGTCTTCTTGTTGCTGCTGGT
TATTCTGATGCTCCTCTTTCTATACGCCATGCCTGGAGCTGCTGTCCAAA
AGATGTTTGGTGCTCGTTGAATGTTCAATTGGAGGTTTAAATACAATTTC
AAATATCACCAAGCTAAAAGACAAATCGTCCGCAAAGAAACGAACGTAGC
ATTTGAAAAGACAGCTCTATATTATCGACCGGAGCTCGTGATTGAATGTT
TAGAGAACGACCTTTTCTCACACGATGTTCTAGGTGAGCGTCGAATCAAC
TTGCTGAAAGTCCCACCATATTTCGGCAAACCCTGGGGATGGTCAATGGG
TAAATATAAAGAACTAGCGAAGAACGAGAATAGGACACCATCTTTGTTCA
ACTGCTCCACCATTCGTGGATGGTGGCCCTTGGAAACGGATGACCCTGAA
CGAGAAGACGGTGATGGTGGTCGAGTTGAATTGGAATTGGAGTTGTTAAC
GAAAGAAGAAGCGGACGAGAACCCTGTCGGTGAACAACGAAATGAACCTC
ATGCTCTCTCAAAACCTAAACGCCCTCAAGAGAGTATGCGGTTATTGATC
GGCCCTCTTCGAACACTCAGAATTTTCGTCAATTCACATCGTGGTCTTAT
TTGTAAAGTAGTCTTCTTGTTGCTGCTGGTTATTCTGATGCTCCTCTTTC
TATACGCCATGCCTGGAGCTGCTGTCCAAAAGATGTTTGGTGCTCGTTGA
ATGTTCAATTGGAGGTTTAAATACAATTTCAAATATCACCAAGCTAAAAG
ACAAATCGTCCGCAAAGAAACGAACGTAGCATTTGAAAAGACAGCTCTAT
ATTATCGACCGGAGCTCGTGATTGAATGTTTAGAGAACGACCTTTTCTCA
CACGATGTTCTAGGTGAGCGTCGAATCAACTTGCTGAAAGTCCCACCATA
TTTCGGCAAACCCTGGGGATGGTCAATGGGTAAATATAAAGAACTAGCGA
AGAACGAGAATAGGACACCATCTTTGTTCAACTGCTCCACCATTCGTGGA
TGGTGGCCCTTGGAAACGGATGACCCTGAACGAGAAGACGGTGATGGTGG
TCGAGTTGAATTGGAATTGGAGTTGTTAACGAAAGAAGAAGCGGACGAGA
ACCCTGTCGGTGAACAACGAAATGAACCTCATGCTCTCTCAAAACCTAAA
CGCCCTCAAGAGAGTATGCGGTTATTGATCGGCCCTCTTCGAACACTCAG
AATTTTCGTCAATTCACATCGTGGTCTTATTTGTAAAGTAGTCTTCTTGT
TGCTGCTGGTTATTCTGATGCTCCTCTTTCTATACGCCATGCCTGGAGCT
GCTGTCCAAAAGATGTTTGGTGCTCGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007321XLOC_007321Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013075-proteinTCONS_00013075-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013075-exon-sc0000162-1491911889:104867..105051TCONS_00013075-exon-sc0000162-1491911889:104867..105051Clytia hemisphaericaexon
TCONS_00013075-exon-sc0000162-1510915933:104867..105051TCONS_00013075-exon-sc0000162-1510915933:104867..105051Clytia hemisphaericaexon
TCONS_00013075-exon-sc0000162-1575043694:104867..105051TCONS_00013075-exon-sc0000162-1575043694:104867..105051Clytia hemisphaericaexon
TCONS_00013075-exon-sc0000162-1491911889:105844..105934TCONS_00013075-exon-sc0000162-1491911889:105844..105934Clytia hemisphaericaexon
TCONS_00013075-exon-sc0000162-1510915933:105844..105934TCONS_00013075-exon-sc0000162-1510915933:105844..105934Clytia hemisphaericaexon
TCONS_00013075-exon-sc0000162-1575043694:105844..105934TCONS_00013075-exon-sc0000162-1575043694:105844..105934Clytia hemisphaericaexon
TCONS_00013075-exon-sc0000162-1491911889:106210..106394TCONS_00013075-exon-sc0000162-1491911889:106210..106394Clytia hemisphaericaexon
TCONS_00013075-exon-sc0000162-1510915933:106210..106394TCONS_00013075-exon-sc0000162-1510915933:106210..106394Clytia hemisphaericaexon
TCONS_00013075-exon-sc0000162-1575043694:106210..106394TCONS_00013075-exon-sc0000162-1575043694:106210..106394Clytia hemisphaericaexon
TCONS_00013075-exon-sc0000162-1491911889:106817..106917TCONS_00013075-exon-sc0000162-1491911889:106817..106917Clytia hemisphaericaexon
TCONS_00013075-exon-sc0000162-1510915933:106817..106917TCONS_00013075-exon-sc0000162-1510915933:106817..106917Clytia hemisphaericaexon
TCONS_00013075-exon-sc0000162-1575043694:106817..106917TCONS_00013075-exon-sc0000162-1575043694:106817..106917Clytia hemisphaericaexon
TCONS_00013075-exon-sc0000162-1491911889:107301..107445TCONS_00013075-exon-sc0000162-1491911889:107301..107445Clytia hemisphaericaexon
TCONS_00013075-exon-sc0000162-1510915933:107301..107445TCONS_00013075-exon-sc0000162-1510915933:107301..107445Clytia hemisphaericaexon
TCONS_00013075-exon-sc0000162-1575043694:107301..107445TCONS_00013075-exon-sc0000162-1575043694:107301..107445Clytia hemisphaericaexon
TCONS_00013075-exon-sc0000162-1491911889:107961..107997TCONS_00013075-exon-sc0000162-1491911889:107961..107997Clytia hemisphaericaexon
TCONS_00013075-exon-sc0000162-1510915933:107961..107997TCONS_00013075-exon-sc0000162-1510915933:107961..107997Clytia hemisphaericaexon
TCONS_00013075-exon-sc0000162-1575043694:107961..107997TCONS_00013075-exon-sc0000162-1575043694:107961..107997Clytia hemisphaericaexon
TCONS_00013075-exon-sc0000162-1491911889:108401..109062TCONS_00013075-exon-sc0000162-1491911889:108401..109062Clytia hemisphaericaexon
TCONS_00013075-exon-sc0000162-1510915933:108401..109062TCONS_00013075-exon-sc0000162-1510915933:108401..109062Clytia hemisphaericaexon
TCONS_00013075-exon-sc0000162-1575043694:108401..109062TCONS_00013075-exon-sc0000162-1575043694:108401..109062Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000162supercontigsc0000162:104867..109062 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.430035 3.74229e-08 0.101164 0 0.592178 0.051041 2.13415 3.51757 5.11892 3.57931 6.96582 3.17574 0.720102 0.78838 0.579956 1.04597 0.845178 0.787095 1.46134 1.70169 0.00181373 0 0.964914 0.433824 1.13256 1.38464 0.0519616 0 0 0.0224038
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000008C2_dom
IPR032362Ferlin_C
Blast
BLAST of TCONS_00013075 vs. Swiss-Prot (Human)
Match: OTOF (Otoferlin OS=Homo sapiens GN=OTOF PE=1 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 5.121e-17
Identity = 85/223 (38.12%), Postives = 127/223 (56.95%), Query Frame = 3
Query:   87 HCRSTDGSGMFNWRFKYNFKYHQAKRQIV--RKETNVAFEKTALYYRPELVIECLENDLFS-HDVLGERRINLLKVPPYFGKPWGWSMGKYKELAKNENRTP--SLFNCSTIRGWWPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPVGEQRNEPHALSKPKRPQESMRLLIGPLRTLRIFV-NSHRGLICKXXXXXXXXXXXXXXXYAMPGAAVQKMFGA 737
            H  S  G G FNWR+ + F Y  A+ +IV  +KE+  ++++T       L ++  + D FS  D LG   ++L + P         +M    E+A  E   P  S+F    ++GWWPL   +   E    G+VE EL LLT EEA++NPVG  RNEP  L KP RP  S    + PL++ R F+ +++R L+ K++ LLLL++L+ LFLY++PG  V+K+ GA
Sbjct: 1779 HYHSLTGEGNFNWRYLFPFDYLAAEEKIVISKKESMFSWDETEYKIPARLTLQIWDADHFSADDFLGAIELDLNRFPRGAKTAKQCTM----EMATGEVDVPLVSIFKQKRVKGWWPLLARNENDEFELTGKVEAELHLLTAEEAEKNPVGLARNEPDPLEKPNRPDTSFIWFLNPLKSARYFLWHTYRWLLLKLLLLLLLLLLLALFLYSVPGYLVKKILGA 1997          
The following BLAST results are available for this feature:
BLAST of TCONS_00013075 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
OTOF5.121e-1738.12Otoferlin OS=Homo sapiens GN=OTOF PE=1 SV=3[more]
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