TCONS_00013069 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013069
Unique NameTCONS_00013069
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2696

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013069 ID=TCONS_00013069|Name=TCONS_00013069|organism=Clytia hemisphaerica|type=transcript|length=2696bp
GCTAAAAAGTGTTTTGGACGGGCAATGTTTTATCGTTGAATAGTATTTAT
TTAACGGAGATGTAAATATGTAATGTTTTTATTACCTTAATATAATGTTT
GCTACTAGAATGTTTTTATATACATACTTTTCAGAAGGTTGATAAAGTTA
CATTATGCCTACCCAAAGAGCCTGTTGGCCATCTATGACATTTTTAATAT
ATAACATTAGTCCAGGTGGGATTTAATTTTGTGTGTAGAAAAGGAGTATC
GTTAATTTCACAATTCTGGATTGATACTTTTCAATTTATGTATATAAATA
AAAATCTTGATTAAAGAAGGAAACTGCGATGCTATTTTCCTGGCATCTTG
GGGATCATTTACCCCTTGTCTGTACATGAacataaaaattgaaacagcCT
CAACAATACAGGAGTCCTCATTTTACATAAAGAGTGTTTAgtgtgtttta
ttttaatattgaaattacAAATACATATATTAtctattttttgtaaataa
ataattgatttttagggaatattaatttttaaagacttatttttttagaa
acaaaaatgatcaaatattatgtaaaattttttttcaaaaacttattacc
tcgattctttaaaatttgataaattattatagaatcaaaattatttgatC
GCGGAAATGTTTGATTGGCCAAGATCAGGTTTGTAATGAACTTAGCTGTA
TAAACCTAGACTTTCAAATAATATATAGGTGAAACGTATCAATCATCTAC
ACATCAGTGGTAAGCTGTTGTCTTTGAGGTTCACAAGATGTAGAAGGAAC
AGTGTTTTGTTGTGAACGCGAAGAAGGTTGAACCATACTGTAAATCTCAT
CATCACAAAAACTCGATTCTGATGCATAACCATAATTTCCACTGTGTCCT
GATGCTGAACTGTTCTTAGAGACACTCCTTTGCACTGCTTTTCGTGATTG
GTGCGCCATGTAACCACTGTGGCGTTGTGAGGGTGCAACGAGTGGGCGTT
GAATGAAATGGGGCGACATCTGAATATATCCATAATCACTTTCGGAGGTA
TATCCATTGGGTGTCTCGTAGCCTGATCGAGGGTACATGGCGCCTGGAGT
GGCGTATCCTGGCGTGTAGTATCCAGGTAGAGGAGGGGCATGATGTGTTG
GCATGAAGTAAGGTGACATTTGGGCTGGAGCGTGGTTCATGTATGGTTGA
GGGGTAGCATAGAAGTTTCCAGCTGCATACCGTGGGTGGGGTGCTGGATA
GTAGCCTCCAGGTATAGCTGAGTGAGGTCGGTCTTGGTCAGTAAAGGAAG
GGTGAGGGTGTGGTGGTACATGATCGAAAGTGAATCGTGGGGCAGCATAT
TGACGCATATGAATAGCAGGTGTGACGTCACTTTGATAACCACGATACAC
GTCATCTTCATACGCTGAACTATAACCCTCACTTGAGAACTGTCGATGTG
AATGTCCTGTATTACGTTGGTTGGCTTTCTGTGGTTGTATGAAACGTGTT
TGTGCATAAACCATTGGGTCTTCGTAACATAATTCCTTAGCCGTGTATTG
CACAGGTTCAAATGCGTGGTCCAATGATTTGTGGCTAACTGATCTTTTGA
TCTGGTCAATCTTTTCCATGGATGCAGCACGACTGTTCAATTTAGACATG
CTTGGTGTTCGTTGAAACACTTGTTTGGGGTTAGCGTAATATTCAAAAGC
CCCGTTCAAGTTATCTACGGACTTTGCTCTTGAAGATGAGAAGAGATTCT
TGAACGATCCTGACTTTCCTTTGGATAAATTACTCTTGTTTTCTTGGTTT
GTTGGCTTGGTTTCTTTCACCCCTTTCTCTTCTTCGGGTGGAATGTAAAC
GCCCACTGATCGGGCGTAATCGTTCGAAGAATGGGCTCGACAACGACCAC
CGCTCTCTTTCTTTTTGCCACTTGCAGTAAATTTACTGAATATgcctttt
ttcttttgacttgGTGACGGCATGTAATGAGCTAATTGTCTATCCAGTAA
AGCTTCTTCGTGTCTCTGTTTCAcgctttcttttaatttacgaAATAGTC
CCATTTTGTTGTTATGTTTTTTGACATTACGTTCACTGTCACTGTAATAT
TGATTGAGAGGATATTTGTCGCGTCCTGTAGAGTCCGTGCAGTGCTCCTC
TTCTGTATCTTCCACTATCTTTCCaatgtttttctccttattgttGTTGT
TCTGTTTTGTCGATCGTTGCCGTTTGAACATCCCCATGAAGGATTTCTTT
GGATCACTCTTTACATCCATGTTATTCAAGACTTGGTCCAACACAGCACG
TTCTTTAGGATTCCACGTGCCAGAGTAAATATCCTTCCGGTTCATTTGAA
GGGTGGTTGGTTGGAAATCACTAAGTGCGCTCTCCTCGCTGTCTTCTGGT
GGTGGAACAGTGATACTCAACCGATTTACGTTCTTACTTCCGGCCCTTTT
CCGCCGGCTGTCTTGACTTTCCTTTACTTCACTTCCGGCCTCGATTCGTT
TGCTTCCGGCACGCTTTCGATAGCGAAGTTGTTTTTCTTCTGTAGCGCTT
TCAGATGAATTTTCGCTTCCCGAATCATTTTTGGAGTCGAGTAAAGAAAC
GCGACTTGAGCGACGCTTATCTCTTTCAGATTTCGTTTTGCGACTTTTGT
TGATGGGAGTTTGATCAAGTGGCAGTGCTTCGATTTTCACTTCCCC
Run BLAST on NCBI

transcript from alignment at sc0000162:45847..48615+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013069 ID=TCONS_00013069|Name=TCONS_00013069|organism=Clytia hemisphaerica|type=transcript|length=2769bp|location=Sequence derived from alignment at sc0000162:45847..48615+ (Clytia hemisphaerica)
GCTAAAAAGTGTTTTGGACGGGCAATGTTTTATCGTTGAATAGTATTTAT
TTAACGGAGATGTAAATATGTAATGTTTTTATTACCTTAATATAATGTTT
GCTACTAGAATGTTTTTATATACATACTTTTCAGAAGGTTGATAAAGTTA
CATTATGCCTACCCAAAGAGCCTGTTGGCCATCTATGACATTTTTAATAT
ATAACATTAGTCCAGGTGGGATTTAATTTTGTGTGTAGAAAAGGAGTATC
GTTAATTTCACAATTCTGGATTGATACTTTTCAATTTATGTATATAAATA
AAAATCTTGATTAAAGAAGGAAACTGCGATGCTATTTTCCTGGCATCTTG
GGGATCATTTACCCCTTGTCTGTACATGAacataaaaattgaaacagcCT
CAACAATACAGGAGTCCTCATTTTACATAAAGAGTGTTTAgtgtgtttta
ttttaatattgaaattacAAATACATATATTAtctattttttgtaaataa
ataattgatttttagggaatattaatttttaaagacttatttttttagaa
acaaaaatgatcaaatattatgtaaaattttttttcaaaaacttattacc
tcgattctttaaaatttgataaattattatagaatcaaaattatttgatC
GCGGAAATGTTTGATTGGCCAAGATCAGGTTTGTAATGAACTTAGCTGTA
TAAACCTAGACTTTCAAATAATATATAGGTGAAACGTATCAATCATCTAC
ACATCAGTGGTAAGCTGTTGTCTTTGAGGTTCACAAGATGTAGAAGGAAC
AGTGTTTTGTTGTGAACGCGAAGAAGGTTGAACCATACTGTAAATCTCAT
CATCACAAAAACTCGATTCTGATGCATAACCATAATTTCCACTGTGTCCT
GATGCTGAACTGTTCTTAGAGACACTCCTTTGCACTGCTTTTCGTGATTG
GTGCGCCATGTAACCACTGTGGCGTTGTGAGGGTGCAACGAGTGGGCGTT
GAATGAAATGGGGCGACATCTGAATATATCCATAATCACTTTCGGAGGTA
TATCCATTGGGTGTCTCGTAGCCTGATCGAGGGTACATGGCGCCTGGAGT
GGCGTATCCTGGCGTGTAGTATCCAGGTAGAGGAGGGGCATGATGTGTTG
GCATGAAGTAAGGTGACATTTGGGCTGGAGCGTGGTTCATGTATGGTTGA
GGGGTAGCATAGAAGTTTCCAGCTGCATACCGTGGGTGGGGTGCTGGATA
GTAGCCTCCAGGTATAGCTGAGTGAGGTCGGTCTTGGTCAGTAAAGGAAG
GGTGAGGGTGTGGTGGTACATGATCGAAAGTGAATCGTGGGGCAGCATAT
TGACGCATATGAATAGCAGGTGTGACGTCACTTTGATAACCACGATACAC
GTCATCTTCATACGCTGAACTATAACCCTCACTTGAGAACTGTCGATGTG
AATGTCCTGTATTACGTTGGTTGGCTTTCTGTGGTTGTATGAAACGTGTT
TGTGCATAAACCATTGGGTCTTCGTAACATAATTCCTTAGCCGTGTATTG
CACAGGTTCAAATGCGTGGTCCAATGATTTGTGGCTAACTGATCTTTTGA
TCTGGTCAATCTTTTCCATGGATGCAGCACGACTGTTCAATTTAGACATG
CTTGGTGTTCGTTGAAACACTTGTTTGGGGTTAGCGTAATATTCAAAAGC
CCCGTTCAAGTTATCTACGGACTTTGCTCTTGAAGATGAGAAGAGATTCT
TGAACGATCCTGACTTTCCTTTGGATAAATTACTCTTGTTTTCTTGGTTT
GTTGGCTTTGTTTCTTTCACCCCTTTCTCTTCTTCGGGTGGAATGTAAAC
GCCCACTGATCGGGCGTNGGTTTGTTGGCTTGGTTTCTTTCACCCCTTTC
TCTTCTTCGGGTGGAATGTAAACGCCCACTGATCGGGCGTAATCGTTCGA
AGAATGGGCTCGACAACGACCACCGCTCTCTTTCTTTTTGCCACTTGCAG
TAAATTTACTGAATATgccttttttcttttgacttgGTGACGGCATGTAA
TGAGCTAATTGTCTATCCAGTAAAGCTTCTTCGTGTCTCTGTTTCAcgct
ttcttttaatttacgaAATAGTCCCATTTTGTTGTTATGTTTTTTGACAT
TACGTTCACTGTCACTGTAATATTGATTGAGAGGATATTTGTCGCGTCCT
GTAGAGTCCGTGCAGTGCTCCTCTTCTGTATCTTCCACTATCTTTCCaat
gtttttctccttattgttGTTGTTCTGTTTTGTCGATCGTTGCCGTTTGA
ACATCCCCATGAAGGATTTCTTTGGATCACTCTTTACATCCATGTTATTC
AAGACTTGGTCCAACACAGCACGTTCTTTAGGATTCCACGTGCCAGAGTA
AATATCCTTCCGGTTCATTTGAAGGGTGGTTGGTTGGAAATCACTAAGTG
CGCTCTCCTCGCTGTCTTCTGGTGGTGGAACAGTGATACTCAACCGATTT
ACGTTCTTACTTCCGGCCCTTTTCCGCCGGCTGTCTTGACTTTCCTTTAC
TTCACTTCCGGCCTCGATTCGTTTGCTTCCGGCACGCTTTCGATAGCGAA
GTTGTTTTTCTTCTGTAGCGCTTTCAGATGAATTTTCGCTTCCCGAATCA
TTTTTGGAGTCGAGTAAAGAAACGCGACTTGAGCGACGCTTATCTCTTTC
AGATTTCGTTTTGCGACTTTTGTTGATGGGAGTTTGATCAAGTGGCAGTG
CTTCGATTTTCACTTCCCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007318XLOC_007318Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013069-exon-sc0000162-1491911889:45847..47642TCONS_00013069-exon-sc0000162-1491911889:45847..47642Clytia hemisphaericaexon
TCONS_00013069-exon-sc0000162-1510915933:45847..47642TCONS_00013069-exon-sc0000162-1510915933:45847..47642Clytia hemisphaericaexon
TCONS_00013069-exon-sc0000162-1575043694:45847..47642TCONS_00013069-exon-sc0000162-1575043694:45847..47642Clytia hemisphaericaexon
TCONS_00013069-exon-sc0000162-1491911889:47716..48615TCONS_00013069-exon-sc0000162-1491911889:47716..48615Clytia hemisphaericaexon
TCONS_00013069-exon-sc0000162-1510915933:47716..48615TCONS_00013069-exon-sc0000162-1510915933:47716..48615Clytia hemisphaericaexon
TCONS_00013069-exon-sc0000162-1575043694:47716..48615TCONS_00013069-exon-sc0000162-1575043694:47716..48615Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000162supercontigsc0000162:45847..48615 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.172897	0.0863857	0	0.0471234	1.32776	0.380399	0.776962	0.415787	0.109921	0.354875	0.137573	0.446357	5.18993	4.07322	9.21508	6.26137	1.41285	2.14365	9.46978	6.12612	1.58697	2.79817	1.32252	1.0711	1.78466	1.31792	0.633621	0.95316	11.8621	11.5652
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013069 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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