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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013044 ID=TCONS_00013044|Name=TCONS_00013044|organism=Clytia hemisphaerica|type=transcript|length=1881bp
TCAACACTCAGATAGGAACAAGCATTTTTAGTGTTGCTAGTGAAATCCAG
GGATTATCCTTCTCCCCAATTTTTGTCTCGATTAAcccaatttaaaaaat
gattatgttattattattttctctTCAGAAAAGATAAGAATTATGCAATT
CCATCAACATGACTTTATCTTTTAATATCACAAGTGGTACAAGCGAAACC
ACCCCAAAGAAGCATTTCATACCCAGGCCCCTCAGGCGTCGAAGTCGTGC
CCAGtcaatcaaagatgaagaacaAGGAATCCCGGTCTACAAACCGGTTT
TAGAAATCGGGAAATCTTTACACAAAGAGTTCCCGTTTAATAGCCGCATT
ATAGATGATGGGACGCTTGTTTGGTTTTCATTATCTGGCAAACAAGAAAT
AACACTGAACTCGATCCACTATAAAAACAATCGGTTACAAGTTGGACAGT
CTTGGTCTATCAATGAGTCAATCAACAAAAAGAAAGGGAACGAAAAATGT
TTGAACTCAATGGTCACATTTAGTCCTGATTTAAGTTTTGGTGTTTTATT
GCAGCATACCAAGTCACGTGTTACGTTCCAGTCCCCTAAAACGTATATTC
GCGTCTCGATTCTAAAGTTCCAGCATAGTGGACTGGTTTCAAGTGTGAAA
AATcctaaaatatcaaattttgacGTTTACAAGAATGTGTTAGTAATGAA
AGGTCGGAATGGTGATATATTcaagaaaattgttttatgTTTGTCTCCCA
GAAAGAACCTTTTAGCTCTTGTTCTTCGTTACGATTTCACACACTCCACT
GTTTTCGTTTTCCAAATAAATTATAACAAAACCGCTGACCAGTACTCGTT
AGATTCGCTACTGCAGAAGAATGTGGACTATGAAATTAATTCGATCAAAT
TTAATGAATTCGAAAATACGTTGTTATTACTTGGTTCACGTTCGTTTCAT
GTTTTATACCCTATAGACGGCTCTACGCCGTCGGAGTCACGTATCTATGG
TGTCGATCCGTACATTATCTACGATAACAAACTAAAATGCGAATTCATTT
TCGCTcaaagtaaggataatttttacGAGGTTGATATTTATCAAGTGAAA
CAAGCCTTAAAGAGGGCGTCTGTACCGCAAAGGAGATTTTTCGATTATAA
GAAACTACGGAACATCGAATATGATCGCTTGAAACAAGAAAACGGCATCA
AGCGAGTTTTCTATGTAcatcatttccaaaacatcacTCGCTTATTTCTT
GGTTTCACTAAAAAAGTTTACATTTTCAACCCGTTTTCTTGTCAATTGTT
ATACAAGCTAGACTTGTCTTGCAGCCTGGAGACGCCATATTGTTACACAC
TTGATGCCAATTGGTCAGGCAAAGAAGTATCATTATTCTGTTGggataat
ttcaattttgtttctCTTAAGATTTATCATCTTGAGGAGGAGTTTGATAT
GTCGTTAAAACAACAAGCCTTGTTGGCTGTTCAAGCAAATTATTCACTGG
AGACTTTGAAAAAGATGAGAGTACCGAAATTTATTTTAGCATCACTGGGT
GATACGTCAGTTTGATTGTTTAACTGCTGTTCGTATTTTTAAGGGTTCGG
CCTATTTGCCACGGAAAAAAATGAAGGTTCGACCTTTCAAATTTGTACTG
GGaatgtgtcaatttttatgacaccttactgtcagaattgtcatcatgct
caagaaAATTATTAGGTGTCAAAAAAAAGTTatataaaaattatgaattt
ttacaCTGAACATATGTTTGACCAACGAACACAAAAAAGCCCCATCCCCC
TAAttacgaatagggttaatgaTTCTCTCTGCAGATAGGGTAGTGTTTTA
ATAACTCGAGCCTAAAAAAGCTTGAGATTTC Run BLAST on NCBI protein sequence of TCONS_00013044-protein >TCONS_00013044-protein ID=TCONS_00013044-protein|Name=TCONS_00013044-protein|organism=Clytia hemisphaerica|type=polypeptide|length=468bp
MTLSFNITSGTSETTPKKHFIPRPLRRRSRAQSIKDEEQGIPVYKPVLEI
GKSLHKEFPFNSRIIDDGTLVWFSLSGKQEITLNSIHYKNNRLQVGQSWS
INESINKKKGNEKCLNSMVTFSPDLSFGVLLQHTKSRVTFQSPKTYIRVS
ILKFQHSGLVSSVKNPKISNFDVYKNVLVMKGRNGDIFKKIVLCLSPRKN
LLALVLRYDFTHSTVFVFQINYNKTADQYSLDSLLQKNVDYEINSIKFNE
FENTLLLLGSRSFHVLYPIDGSTPSESRIYGVDPYIIYDNKLKCEFIFAQ
SKDNFYEVDIYQVKQALKRASVPQRRFFDYKKLRNIEYDRLKQENGIKRV
FYVHHFQNITRLFLGFTKKVYIFNPFSCQLLYKLDLSCSLETPYCYTLDA
NWSGKEVSLFCWDNFNFVSLKIYHLEEEFDMSLKQQALLAVQANYSLETL
KKMRVPKFILASLGDTSV Run BLAST on NCBI transcript from alignment at sc0000161:477660..479611- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013044 ID=TCONS_00013044|Name=TCONS_00013044|organism=Clytia hemisphaerica|type=transcript|length=1952bp|location=Sequence derived from alignment at sc0000161:477660..479611- (Clytia hemisphaerica)
TCAACACTCAGATAGGAACAAGCATTTTTAGTGTTGCTAGTGAAATCCAG
GGATTATCCTTCTCCCCAATTTTTGTCTCGATTAACCCAATTTAAAAAAT
GATTATGTTATTATTATTTTCTCTTCAGAAAAGATAAGAATTATGCAATT
CCATCAACATGACTTTATCTTTTAATATCACAAGTGGTACAAGCGAAACC
ACCCCAAAGAAGCATTTCATACCCAGGCCCCTCAGGCGTCGAAGTCGTGC
CCAGTCAATCAAAGATGAAGAACAAGGAATCCCGGTCTACAAACCGGTTT
TAGAAATCGGGAAATCTTTACACAAAGAGTTCCCGTTTAATAGCCGCATT
ATAGATGATGGGACGCTTGTTTGGTTTTCATTATCTGGCAAACAAGAAAT
AACACTGAACTCGATCCACTATAAAAACAATCGGTTACAAGTTGGACAGT
CTTGGTCTATCAATGAGTCAATCAACAAAAAGAAAGGGAACGAAAAATGT
TTGAACTCAATGGTCACATTTAGTCCTGATTTGAGTTTTNAATCAACAAA
AAGAAAGGGAACGAAAAATGTTTGAACTCAATGGTCACATTTAGTCCTGA
TTTAAGTTTTGGTGTTTTATTGCAGCATACCAAGTCACGTGTTACGTTCC
AGTCCCCTAAAACGTATATTCGCGTCTCGATTCTAAAGTTCCAGCATAGT
GGACTGGTTTCAAGTGTGAAAAATCCTAAAATATCAAATTTTGACGTTTA
CAAGAATGTGTTAGTAATGAAAGGTCGGAATGGTGATATATTCAAGAAAA
TTGTTTTATGTTTGTCTCCCAGAAAGAACCTTTTAGCTCTTGTTCTTCGT
TACGATTTCACACACTCCACTGTTTTCGTTTTCCAAATAAATTATAACAA
AACCGCTGACCAGTACTCGTTAGATTCGCTACTGCAGAAGAATGTGGACT
ATGAAATTAATTCGATCAAATTTAATGAATTCGAAAATACGTTGTTATTA
CTTGGTTCACGTTCGTTTCATGTTTTATACCCTATAGACGGCTCTACGCC
GTCGGAGTCACGTATCTATGGTGTCGATCCGTACATTATCTACGATAACA
AACTAAAATGCGAATTCATTTTCGCTCAAAGTAAGGATAATTTTTACGAG
GTTGATATTTATCAAGTGAAACAAGCCTTAAAGAGGGCGTCTGTACCGCA
AAGGAGATTTTTCGATTATAAGAAACTACGGAACATCGAATATGATCGCT
TGAAACAAGAAAACGGCATCAAGCGAGTTTTCTATGTACATCATTTCCAA
AACATCACTCGCTTATTTCTTGGTTTCACTAAAAAAGTTTACATTTTCAA
CCCGTTTTCTTGTCAATTGTTATACAAGCTAGACTTGTCTTGCAGCCTGG
AGACGCCATATTGTTACACACTTGATGCCAATTGGTCAGGCAAAGAAGTA
TCATTATTCTGTTGGGATAATTTCAATTTTGTTTCTCTTAAGATTTATCA
TCTTGAGGAGGAGTTTGATATGTCGTTAAAACAACAAGCCTTGTTGGCTG
TTCAAGCAAATTATTCACTGGAGACTTTGAAAAAGATGAGAGTACCGAAA
TTTATTTTAGCATCACTGGGTGATACGTCAGTTTGATTGTTTAACTGCTG
TTCGTATTTTTAAGGGTTCGGCCTATTTGCCACGGAAAAAAATGAAGGTT
CGACCTTTCAAATTTGTACTGGGAATGTGTCAATTTTTATGACACCTTAC
TGTCAGAATTGTCATCATGCTCAAGAAAATTATTAGGTGTCAAAAAAAAG
TTATATAAAAATTATGAATTTTTACACTGAACATATGTTTGACCAACGAA
CACAAAAAAGCCCCATCCCCCTAATTACGAATAGGGTTAATGATTCTCTC
TGCAGATAGGGTAGTGTTTTAATAACTCGAGCCTAAAAAAGCTTGAGATT
TC Coding sequence (CDS) from alignment at sc0000161:477660..479611- >TCONS_00013044 ID=TCONS_00013044|Name=TCONS_00013044|organism=Clytia hemisphaerica|type=CDS|length=2814bp|location=Sequence derived from alignment at sc0000161:477660..479611- (Clytia hemisphaerica)
ATTTAGTCCTGATTTAAGTTTTGGTGTTTTATTGCAGCATACCAAGTCAC
GTGTTACGTTCCAGTCCCCTAAAACGTATATTCGCGTCTCGATTCTAAAG
TTCCAGCATAGTGGACTGGTTTCAAGTGTGAAAAATCCTAAAATATCAAA
TTTTGACGTTTACAAGAATGTGTTAGTAATGAAAGGTCGGAATGGTGATA
TATTCAAGAAAATTGTTTTATGTTTGTCTCCCAGAAAGAACCTTTTAGCT
CTTGTTCTTCGTTACGATTTCACACACTCCACTGTTTTCGTTTTCCAAAT
AAATTATAACAAAACCGCTGACCAGTACTCGTTAGATTCGCTACTGCAGA
AGAATGTGGACTATGAAATTAATTCGATCAAATTTAATGAATTCGAAAAT
ACGTTGTTATTACTTGGTTCACGTTCGTTTCATGTTTTATACCCTATAGA
CGGCTCTACGCCGTCGGAGTCACGTATCTATGGTGTCGATCCGTACATTA
TCTACGATAACAAACTAAAATGCGAATTCATTTTCGCTCAAAGTAAGGAT
AATTTTTACGAGGTTGATATTTATCAAGTGAAACAAGCCTTAAAGAGGGC
GTCTGTACCGCAAAGGAGATTTTTCGATTATAAGAAACTACGGAACATCG
AATATGATCGCTTGAAACAAGAAAACGGCATCAAGCGAGTTTTCTATGTA
CATCATTTCCAAAACATCACTCGCTTATTTCTTGGTTTCACTAAAAAAGT
TTACATTTTCAACCCGTTTTCTTGTCAATTGTTATACAAGCTAGACTTGT
CTTGCAGCCTGGAGACGCCATATTGTTACACACTTGATGCCAATTGGTCA
GGCAAAGAAGTATCATTATTCTGTTGGGATAATTTCAATTTTGTTTCTCT
TAAGATTTATCATCTTGAGGAGGAGTTTGATATGTCGTTAAAACAACAAG
CCTTGTTGGCTGTTCAAGCAAATTATTCACTGGAGACTTTGAAAAAGATG
AGAGTACCGAAATTTATTTTAGCATCACTGGGTGATACGTCAGTTTGAAT
GACTTTATCTTTTAATATCACAAGTGGTACAAGCGAAACCACCCCAAAGA
AGCATTTCATACCCAGGCCCCTCAGGCGTCGAAGTCGTGCCCAGTCAATC
AAAGATGAAGAACAAGGAATCCCGGTCTACAAACCGGTTTTAGAAATCGG
GAAATCTTTACACAAAGAGTTCCCGTTTAATAGCCGCATTATAGATGATG
GGACGCTTGTTTGGTTTTCATTATCTGGCAAACAAGAAATAACACTGAAC
TCGATCCACTATAAAAACAATCGGTTACAAGTTGGACAGTCTTGGTCTAT
CAATGAGTCAATCAACAAAAAGAAAGGGAACGAAAAATGTTTGAACTCAA
TGGTCACATTTAGTCCTGATTTAAGTTTTGGTGTTTTATTGCAGCATACC
AAGTCACGTGTTACGTTCCAGTCCCCTAAAACGTATATTCGCGTCTCGAT
TCTAAAGTTCCAGCATAGTGGACTGGTTTCAAGTGTGAAAAATCCTAAAA
TATCAAATTTTGACGTTTACAAGAATGTGTTAGTAATGAAAGGTCGGAAT
GGTGATATATTCAAGAAAATTGTTTTATGTTTGTCTCCCAGAAAGAACCT
TTTAGCTCTTGTTCTTCGTTACGATTTCACACACTCCACTGTTTTCGTTT
TCCAAATAAATTATAACAAAACCGCTGACCAGTACTCGTTAGATTCGCTA
CTGCAGAAGAATGTGGACTATGAAATTAATTCGATCAAATTTAATGAATT
CGAAAATACGTTGTTATTACTTGGTTCACGTTCGTTTCATGTTTTATACC
CTATAGACGGCTCTACGCCGTCGGAGTCACGTATCTATGGTGTCGATCCG
TACATTATCTACGATAACAAACTAAAATGCGAATTCATTTTCGCTCAAAG
TAAGGATAATTTTTACGAGGTTGATATTTATCAAGTGAAACAAGCCTTAA
AGAGGGCGTCTGTACCGCAAAGGAGATTTTTCGATTATAAGAAACTACGG
AACATCGAATATGATCGCTTGAAACAAGAAAACGGCATCAAGCGAGTTTT
CTATGTACATCATTTCCAAAACATCACTCGCTTATTTCTTGGTTTCACTA
AAAAAGTTTACATTTTCAACCCGTTTTCTTGTCAATTGTTATACAAGCTA
GACTTGTCTTGCAGCCTGGAGACGCCATATTGTTACACACTTGATGCCAA
TTGGTCAGGCAAAGAAGTATCATTATTCTGTTGGGATAATTTCAATTTTG
TTTCTCTTAAGATTTATCATCTTGAGGAGGAGTTTGATATGTCGTTAAAA
CAACAAGCCTTGTTGGCTGTTCAAGCAAATTATTCACTGGAGACTTTGAA
AAAGATGAGAGTACCGAAATTTATTTTAGCATCACTGGGTGATACGTCAG
TTTGAATGACTTTATCTTTTAATATCACAAGTGGTACAAGCGAAACCACC
CCAAAGAAGCATTTCATACCCAGGCCCCTCAGGCGTCGAAGTCGTGCCCA
GTCAATCAAAGATGAAGAACAAGGAATCCCGGTCTACAAACCGGTTTTAG
AAATCGGGAAATCTTTACACAAAGAGTTCCCGTTTAATAGCCGCATTATA
GATGATGGGACGCTTGTTTGGTTTTCATTATCTGGCAAACAAGAAATAAC
ACTGAACTCGATCCACTATAAAAACAATCGGTTACAAGTTGGACAGTCTT
GGTCTATCAATGAGTCAATCAACAAAAAGAAAGGGAACGAAAAATGTTTG
AACTCAATGGTCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013044-exon-sc0000161-1575043694:479095..479611 | TCONS_00013044-exon-sc0000161-1575043694:479095..479611 | Clytia hemisphaerica | exon |
| TCONS_00013044-exon-sc0000161-1575043694:477660..479023 | TCONS_00013044-exon-sc0000161-1575043694:477660..479023 | Clytia hemisphaerica | exon |
| TCONS_00013044-exon-sc0000161-1510915933:479095..479611 | TCONS_00013044-exon-sc0000161-1510915933:479095..479611 | Clytia hemisphaerica | exon |
| TCONS_00013044-exon-sc0000161-1510915933:477660..479023 | TCONS_00013044-exon-sc0000161-1510915933:477660..479023 | Clytia hemisphaerica | exon |
| TCONS_00013044-exon-sc0000161-1491911889:479095..479611 | TCONS_00013044-exon-sc0000161-1491911889:479095..479611 | Clytia hemisphaerica | exon |
| TCONS_00013044-exon-sc0000161-1491911889:477660..479023 | TCONS_00013044-exon-sc0000161-1491911889:477660..479023 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000161 | supercontig | sc0000161:477660..479611 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR015943 | WD40/YVTN_repeat-like_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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