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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012994 ID=TCONS_00012994|Name=TCONS_00012994|organism=Clytia hemisphaerica|type=transcript|length=2170bp
tgCTATTTGATGATAAGTCTGACGAAAAAAATGACTACAAACTTAAATTT
AAAGACCTTTTAACCTATGAAcatgaaaatctgtcaaaataaatataaga
aaaatatacAATTAAAAACACAGCACTCAATCAAATAAgatcataaaaaa
atatgtacatCTGTTAAAAAACCTAAAGCCtggtaaaatccatttttttg
atcaacaaaaacaaaaatgtacttAAAATAAAGTTTGGAGAGGGGGTAAA
TGGGAGTGGTGAAGTGGCTAAAGAACTATAAATATGATAAAGGCTAGCAG
GTTACCATAAGTATGGGGTGAATTGGTAAGAGGTAAAAAATTACTTTCCA
ATCACATATAAAAAAACTAGTTCTACAGCTTTTATATGCCCGAATAAACA
TGGTCAGGCTATGCTGATCTGTTCTTTAAAATAAAAGTGGAAAGCATGGC
AAGCCAATTAACCTTTGTTACATTACACAAGAGTAGGGAAAAATTTCTGG
TCAGTTCAttataaatttaaagaaaaaacccACAAAAAACTGTCTGATAT
CATCAGAAGTATACTTTTTCAGCATACTATCAAGGTCCTGAAATAATGAT
TCTTTATTCATGATCATACAACAGTTTAAGAGGAAAACTGAGAAGGAAGA
ACTTGAAATGAAGGAAAAGCAGATCAGGAGCTACATTGATGAGTACAAGA
ATTTGAACACAAGGATCAATATTATGAGAGGAGAGGCAACAGACGTGATA
GATCAGATGGAGGAGGCAACCCACCAACTCATTGATAAACAAAACATCAT
AAAACACCATGAAGAGTACATTCAAGGAGTGGAAACTGAAATCGCAAACT
TGAGACGTGCCATCCAATCAGAACATGAAAGTATTGaaaaagaacaacaa
caaaTTAAGCTTTTAGAACGAGATTACGATAAACAAAAAGGGCAATTAAA
TATGCTACAAAAAACGATTGGATCAATTAGCGAGAATAAAGAGAAATTAC
GNTATGCTACAAAAAACGATTGGATCGATTAGCGAGAATAAAGAGAAATT
ACGAGATATGGTTGAAAAAGTCGCACCCCATGTTGTTCCAATATTGGAAG
AAATCGATGACGACCAATAGAAATAAGCTGCTTAATCTCAAAGCAGGTCT
TCGTTGTCAAGATAATTGGTTTGTATGGAAATAATGTCACATCCACACTG
TAGACATTGACGCTTCCCAGAAAGACATTTAGCACAAAAAGAATGCCCAC
AAGGGAACACCATGACAGGTTTACGATCTTCAGTCACCATAACTTGTTTA
CACGAGGCACAAAAATGATTATCCATATACTTAATTCCTTCCATTTTCTT
TTGCGGTTTGTTGTTATTATATTTGGTACTGTCGTATTGGTCCAGTTTTA
GATTTGTCATGTGCTCTGTGAATGATGTTGAAAGAGACTCATCGGATtcc
aaagttgaatttttttcttcatctgGATTGTCAACAAGCTCTTCTTTGGA
AAGTTCTTTGTTATTACTGTGTGTGAAATTTGATGATTTGGCTGATAAGG
GTTTAGAAGAAGTTTGTTTCTTAAGAGAACTGTGAgtaaaggtttttgtt
tttttgttggaTGGTGTACGTGATGAATCTGGTCGACTCCGAGAAGTTCC
AGAACCGTTTCGAACAACAAATCCATTATAATTTGAATTACTTGTCGCCC
AAGCCATTGTATCAGACTCTTTCATAGCATCCTGtgtactttgttttgat
ttcacacTTGAGCTTGTAGAACGCAAACTAGAGTGAACAAATTTCTTTGG
ATTTTTATTATCTTCTCTCTCCTTCATCCATTggttttgcttttctttca
gTTTATTCACTTTTTCAACCAAATGTTGGTCTTTAGTTCTTTTAGAAGAC
ATTGTCACAATTTACCCTTGATAAAATGATATAGGTATTATTACTTACAA
AAATCTTAGGATGCCCTGTGCAGAGCATTTTTCAATAAGGAAACCTAGCA
GAGATACAGTAGGTAAAGAAGTcctttttaatcataatttcttttcctct
agatgaatttttgtgaaattttcaggagagatccataaaattatcattga
tatcatgttcaaatatctaaatcattctctttaaaggaaagaaaaaattg
acaatatttacattcctcta Run BLAST on NCBI transcript from alignment at sc0000161:497022..499527+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012994 ID=TCONS_00012994|Name=TCONS_00012994|organism=Clytia hemisphaerica|type=transcript|length=2506bp|location=Sequence derived from alignment at sc0000161:497022..499527+ (Clytia hemisphaerica)
tgCTATTTGATGATAAGTCTGACGAAAAAAATGACTACAAACTTAAATTT
AAAGACCTTTTAACCTATGAAcatgaaaatctgtcaaaataaatataaga
aaaatatacAATTAAAAACACAGCACTCAATCAAATAAgatcataaaaaa
atatgtacatCTGTTAAAAAACCTAAAGCCtggtaaaatccatttttttg
atcaacaaaaacaaaaatgtacttAAAATAAAGTTTGGAGAGGGGGTAAA
TGGGAGTGGTGAAGTGGCTAAAGAACTATAAATATGATAAAGGCTAGCAG
GTTACCATAAGTATGGGGTGAATTGGTAAGAGGTAAAAAATTACTTTCCA
ATCACATATAAAAAAACTAGTTCTACAGCTTTTATATGCCCGAATAAACA
TGGTCAGGCTATGCTGATCTGTTCTTTAAAATAAAAGTGGAAAGCATGGC
AAGCCAATTAACCTTTGTTACATTACACAAGAGTAGGGAAAAATTTCTGG
TCAGTTCAttataaatttaaagaaaaaacccACAAAAAACTGTCTGATAT
CATCAGAAGTATACTTTTTCAGCATACTATCAAGGTCCTGAAATAATGAT
TCTTTATTCATGATCATACAACAGTTTAAGAGGAAAACTGAGAAGGAAGA
ACTTGAAATGAAGGAAAAGCAGATCAGGAGCTACATTGATGAGTACAAGA
ATTTGAACACAAGGATCAATATTATGAGAGGTAAAACTTCTATTTATTTT
CATAGCCCGGAAATATGGTGTTCGTTCTCTTAAAATgaattttgtttata
atttatttaatttacaTTGCAATGCTTAAGTTAAGAGACCTTAAAGGTCT
TCTGAAGATTTCAAGCCTTCAATCAAACCTGATATAGGCATCTCTTATCA
AGTTTCAAAATAGACAAACCCAATGCAAATATGCGTGAAAAGATATATAG
ATTTTGACGGGCTTTAGGCACCCGAGGAGGTGGGCAACATAAAAGATTTT
AGCTTTTGTTTGAGAAGCAACTGAGaataatatattttaatctaaacCAT
CATCTCTATCTTTCAGGAGAGGCAACAGACGTGATAGATCAGATGGAGGA
GGCAACCCACCAACTCATTGATAAACAAAACATCATAAAACACCATGAAG
AGTACATTCAAGGAGTGGAAACTGAAATCGCAAACTTGAGACGTGCCATC
CAATCAGAACATGAAAGTATTGaaaaagaacaacaacaaaTTAAGCTTTT
AGAACGAGATTACGATAAACAAAAAGGGCAATTAAATATGCTACAAAAAA
CGATTGGATCAATTAGCGAGAATAAAGAGAAATTACGNTATGCTACAAAA
AACGATTGGATCGATTAGCGAGAATAAAGAGAAATTACGAGATATGGTTG
AAAAAGTCGCACCCCATGTTGTTCCAATATTGGAAGAAATCGATGACGAC
CAATAGAAATAAGCTGCTTAATCTCAAAGCAGGTCTTCGTTGTCAAGATA
ATTGGTTTGTATGGAAATAATGTCACATCCACACTGTAGACATTGACGCT
TCCCAGAAAGACATTTAGCACAAAAAGAATGCCCACAAGGGAACACCATG
ACAGGTTTACGATCTTCAGTCACCATAACTTGTTTACACGAGGCACAAAA
ATGATTATCCATATACTTAATTCCTTCCATTTTCTTTTGCGGTTTGTTGT
TATTATATTTGGTACTGTCGTATTGGTCCAGTTTTAGATTTGTCATGTGC
TCTGTGAATGATGTTGAAAGAGACTCATCGGATtccaaagttgaattttt
ttcttcatctgGATTGTCAACAAGCTCTTCTTTGGAAAGTTCTTTGTTAT
TACTGTGTGTGAAATTTGATGATTTGGCTGATAAGGGTTTAGAAGAAGTT
TGTTTCTTAAGAGAACTGTGAgtaaaggtttttgtttttttgttggaTGG
TGTACGTGATGAATCTGGTCGACTCCGAGAAGTTCCAGAACCGTTTCGAA
CAACAAATCCATTATAATTTGAATTACTTGTCGCCCAAGCCATTGTATCA
GACTCTTTCATAGCATCCTGtgtactttgttttgatttcacacTTGAGCT
TGTAGAACGCAAACTAGAGTGAACAAATTTCTTTGGATTTTTATTATCTT
CTCTCTCCTTCATCCATTggttttgcttttctttcagTTTATTCACTTTT
TCAACCAAATGTTGGTCTTTAGTTCTTTTAGAAGACATTGTCACAATTTA
CCCTTGATAAAATGATATAGGTATTATTACTTACAAAAATCTTAGGATGC
CCTGTGCAGAGCATTTTTCAATAAGGAAACCTAGCAGAGATACAGTAGGT
AAAGAAGTcctttttaatcataatttcttttcctctagatgaatttttgt
gaaattttcaggagagatccataaaattatcattgatatcatgttcaaat
atctaaatcattctctttaaaggaaagaaaaaattgacaatatttacatt
cctcta
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012994-exon-sc0000161-1491911889:497022..497751 | TCONS_00012994-exon-sc0000161-1491911889:497022..497751 | Clytia hemisphaerica | exon |
| TCONS_00012994-exon-sc0000161-1510915933:497022..497751 | TCONS_00012994-exon-sc0000161-1510915933:497022..497751 | Clytia hemisphaerica | exon |
| TCONS_00012994-exon-sc0000161-1575043694:497022..497751 | TCONS_00012994-exon-sc0000161-1575043694:497022..497751 | Clytia hemisphaerica | exon |
| TCONS_00012994-exon-sc0000161-1491911889:498088..499527 | TCONS_00012994-exon-sc0000161-1491911889:498088..499527 | Clytia hemisphaerica | exon |
| TCONS_00012994-exon-sc0000161-1510915933:498088..499527 | TCONS_00012994-exon-sc0000161-1510915933:498088..499527 | Clytia hemisphaerica | exon |
| TCONS_00012994-exon-sc0000161-1575043694:498088..499527 | TCONS_00012994-exon-sc0000161-1575043694:498088..499527 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000161 | supercontig | sc0000161:497022..499527 + |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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