TCONS_00012936 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012936
Unique NameTCONS_00012936
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length573

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012936 ID=TCONS_00012936|Name=TCONS_00012936|organism=Clytia hemisphaerica|type=transcript|length=573bp
GCGATTAAGACTTCTATTATATTATAAGGttcaataaaattataaatgtA
TAAATTGTtggattattttataaaatatggaaaattacAATAACTGtgaa
ttcagaaaaaaatattttaattttactCTACAAACAACGGGCACACCCTC
CAAAGATACGAAAATTGGCTGGCTTTTAAAAtattacaatttttcaaaac
agttGCCCTATATTACAGCAATACTTTGCACATTTAGTATGAGCTCGGAG
GCGAGTCATTCTGTCAGGATCCTGGCAATTTCTTTGGGAACAATCTAATG
CACGGTCAGTAAGATTGGAACATTTCTCTTGTTCGCTTCCACGACATCTC
CCACAAGACCGAATGCAAATATGACCGTATTTTGAACAATGTTGTGATGA
ATTAAATGTTTCTGTCATGAAACAGAATGATGCTTTATCGCCACAGCCTG
ATGCCAATAATTCTGGAGTTTTTCGTGGGTGTATCGTTGGGGTGGTTCTC
TTAGTTGTTAGTGGTGTCTTGGAGACTGTTGTAGTTGAAGCTTTTGTTGT
TGGCGCTGTCGTTGTAGTTTTTG
Run BLAST on NCBI

protein sequence of TCONS_00012936-protein

>TCONS_00012936-protein ID=TCONS_00012936-protein|Name=TCONS_00012936-protein|organism=Clytia hemisphaerica|type=polypeptide|length=125bp
KTTTTAPTTKASTTTVSKTPLTTKRTTPTIHPRKTPELLASGCGDKASFC
FMTETFNSSQHCSKYGHICIRSCGRCRGSEQEKCSNLTDRALDCSQRNCQ
DPDRMTRLRAHTKCAKYCCNIGQLF
Run BLAST on NCBI

transcript from alignment at sc0000157:435769..436341

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012936 ID=TCONS_00012936|Name=TCONS_00012936|organism=Clytia hemisphaerica|type=transcript|length=573bp|location=Sequence derived from alignment at sc0000157:435769..436341 (Clytia hemisphaerica)
CAAAAACTACAACGACAGCGCCAACAACAAAAGCTTCAACTACAACAGTC
TCCAAGACACCACTAACAACTAAGAGAACCACCCCAACGATACACCCACG
AAAAACTCCAGAATTATTGGCATCAGGCTGTGGCGATAAAGCATCATTCT
GTTTCATGACAGAAACATTTAATTCATCACAACATTGTTCAAAATACGGT
CATATTTGCATTCGGTCTTGTGGGAGATGTCGTGGAAGCGAACAAGAGAA
ATGTTCCAATCTTACTGACCGTGCATTAGATTGTTCCCAAAGAAATTGCC
AGGATCCTGACAGAATGACTCGCCTCCGAGCTCATACTAAATGTGCAAAG
TATTGCTGTAATATAGGGCaactgttttgaaaaattgtaataTTTTAAAA
GCCAGCCAATTTTCGTATCTTTGGAGGGTGTGCCCGTTGTTTGTAGagta
aaattaaaatatttttttctgaattcaCAGTTATTgtaattttccatatt
ttataaaataatccaACAATTTATacatttataattttattgaaCCTTAT
AATATAATAGAAGTCTTAATCGC

Coding sequence (CDS) from alignment at sc0000157:435769..436341

>TCONS_00012936 ID=TCONS_00012936|Name=TCONS_00012936|organism=Clytia hemisphaerica|type=CDS|length=378bp|location=Sequence derived from alignment at sc0000157:435769..436341 (Clytia hemisphaerica)
AAAACTACAACGACAGCGCCAACAACAAAAGCTTCAACTACAACAGTCTC
CAAGACACCACTAACAACTAAGAGAACCACCCCAACGATACACCCACGAA
AAACTCCAGAATTATTGGCATCAGGCTGTGGCGATAAAGCATCATTCTGT
TTCATGACAGAAACATTTAATTCATCACAACATTGTTCAAAATACGGTCA
TATTTGCATTCGGTCTTGTGGGAGATGTCGTGGAAGCGAACAAGAGAAAT
GTTCCAATCTTACTGACCGTGCATTAGATTGTTCCCAAAGAAATTGCCAG
GATCCTGACAGAATGACTCGCCTCCGAGCTCATACTAAATGTGCAAAGTA
TTGCTGTAATATAGGGCaactgttttga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007265XLOC_007265Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012936-proteinTCONS_00012936-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012936-exon-sc0000157-1491911889:435769..436341TCONS_00012936-exon-sc0000157-1491911889:435769..436341Clytia hemisphaericaexon
TCONS_00012936-exon-sc0000157-1510915933:435769..436341TCONS_00012936-exon-sc0000157-1510915933:435769..436341Clytia hemisphaericaexon
TCONS_00012936-exon-sc0000157-1575043694:435769..436341TCONS_00012936-exon-sc0000157-1575043694:435769..436341Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000157supercontigsc0000157:435769..436341 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.25214	1.32285	0.858467	1.5871	0.262878	0	0	0	0.082133	0	0.493732	0	0.129644	0	0.0553446	0.237573	0	0	0.103609	2.4211	0	0	1.18039	1.11931	0.418581	0.439342	13.9062	6.30436	0.466481	1.02787
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012936 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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