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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012929 ID=TCONS_00012929|Name=TCONS_00012929|organism=Clytia hemisphaerica|type=transcript|length=3660bp
ATACTTATTGGGGCAACGGCTATCCTTTACCATAGTTTGATATCTAAAAA
GAACTTTTCCTTTTAAAAGATTAGTGAAacattttggttgtttttaggGC
ACAAACCTCAGCAAAAATGAcggttcttataaacaaaagtatgcttaatc
aaaatcaacaacaaaTATGCATTACTTTATATGATTACTAATACCAAATG
TCAAtataaacaacaaaaacaaatcatATACCCTTAACCTTGTCTCTGTT
AGTGTAGTCAGTACAAAGTACTATcgaacgatgacgtcatttcaCTTAGT
TTGCATCATCTTAACATACAACATGGTTTATTTGTACATATGCCAGAATA
ACTGATTATGTTTGTCTTCTGGCCTTCAGGCCTTCGTTCATTTCGATATT
TTATATAAATAATATTCTATGATACGGTAAGTTGGTCTCATGTCGACATC
CCttttctaattccgacacccttctttattAGAGgtaggaataatatgaa
ggtcagaatcaccaatagagaaaagtttttttcctcTCTGATTGCTAAGC
AATAAAAATTAGCTTAAATCAGCtattctgaccttcctattattcttATC
TGCAAataagggtgtcgaaattagaagagggatgtcgacattaaaccaac
ttacggtaatcgATCTGTTTTTATCAAGTCCAACGAAAAGAATATCCGAA
TATTCGTTTGTCTGTTCCGATTATTCTTGCTTATTTACTATATAAACGTT
CGAATCGAATTACTCAATTGCATTACGTAACCTCAAATAATGTCGTGAAA
TAGCTTATCACTACAAAGTTTGACATCTTTTCCCGAACTAAGAAATTTAA
AATCGAACTACAAAATGTAGCAAATTTCGAAATAGTCACTGTATTACAGT
AAATGATTTTCACAAGGACTTTGTCATATCATAAAATTGTATCCAACATC
CTTTAACATCAAGTCAAGAAagtaaatttacttttttgaccACCATTTTC
CTCAATCCATAGTTCATCACTACTGGTTAACGGTGTTGGTAAAGTTTCAA
ATTTACCAGTAGCGGTTGCGGTTACAACCAGTTGTCTGGGCCTGGAGatg
ttgttattgttgttgatgTTTGGGTTTAACTTGCCAACTGTGGGTGGACT
TTTTCTCTTAGTACATGGATCATCGAGGACGGTGGCAACACTACTGCGAC
GTCGCTGGGTCATGGTCGACGACATGGTTGCCGAATACGCGCTACGTTTA
CGCCAGTTATGACCAGTAAAGAAATTGCGGACATCTTTACGCCATCGGGC
ATCGATTAAGCTGTACACAAGTGGGTTGATGGAAACGTGAAATGGATAAG
TGAAGTGGGCAATGTATACCAGAATCACGAAAGTGGAGGCTTTCATGTCT
CGTTGATTCGCGAAAGAGCCCCATCCATAATCATTATAGCTTAAAAATGT
CATTATGACTTGTTTAGGgaaaacaaaaatgacaaaagcgATCACAACAC
CGATCAGGACATACATGGTGCGGCGGTTGTCTTGGAGACGCTTTTTCCGT
AAACGGGGGTCAGCGATGAAAGAATTTTTACCAAGAACAATGGTTCCATG
TAATGTGGATATGATTAATGAATACAGCGTGGCGATGATGATTGTTGGGA
TCAGAAGATATACGATCAGGACAAACATATTGTATATGAACATGTCCTGG
CTTCCATTCGGCCAATCGACTTCACAGATTCCAAGGTCGGTAATGCTGCT
GTAATAAAAGATCGGGATACACGCCATTAATCCACACAAGCCGTTTATAA
ACAGAATGACATTCAAACCCGTCTTGGAGATTCCTCGGCTAAACGGATTA
ACGATTCCGATAAAACGTTCAATACTGATGGTCAAGATAACACCAATAGC
TAGATAGACACCAAGGTATTCTGCACCTCGCAACACTCTGCATACGAATT
TACCATATATGAATTTGGCTACCCAGAACTTTGGTAAAGCGTAGGTGAAC
TGGAAGATAGCGAAAAACAGGTCGTAAAGAGCCAAGTGAGCGATCAACAT
TTTGCATGGAGCTAAACCGATTCGGAATCGAACGGCAACTGCGATGACGA
TTAGATTCCCGATAATCCCGATAACTGAAGCAACGGTCTCTACTGTCGCG
TAGGGTAGAAGAAAATATGCTGCCTGTATCAAATTTTGAACTGGTTTCGG
TTGGAGAAAATCACAAACGGATTGCTTCGTTGTGTTATCACTAAGGTTAA
AAAGCTTACAATCACAATCGTCTAAAGTTTTGTTAATGAGTGCGCAAAGT
GCTTCGAAACCAGCTACAAAGCTCTCGTCCGGTTTAGTTTCTTGACaaaa
atccattgcaaaggtacCATTAGTGATTTCAAAATTATCACAACTGCATT
CATTTTCGCCAGTCTGTNCTAAACGGATTAACGATTCCGATAAAACGTTC
AATACTGATGGTCAAGATAACACCAATAGCTAGATAGACACCAAGGTATT
CTGCACCTCGTAACACTCTGCATACGAATTTACCATATATGAATTTGGCT
ACCCAGAATTTTGGCAAAGCGTAGGTGAACTGGAAGATAGCGAAAAACAG
GTCGTAAAGAGCCAAGTGAGCGATCAACATTTTGCATGGAGCTAAACCGA
TTCGGAATCGAACGGCAACTGCGATGACGATTAGATTCCCGATAATCCCG
ATAACTGAAGCAACGGTCTCTACTGTCGCGTAGGGTAGAAGAAAATATGC
TGCCTGTATCAAATTTTGAACTGGTTTCGGTTGGAGAAAATCACAAACGG
ATTGCTTCGTTGTGTTATCACTAAGGTTAAAAAGCTTACAATCACAATCG
TCTAAAGTTTTGTTAATGAGTGCGCAAAGTGCTTCGAAACCAGCTACAAA
GCTCTCGTCCGGTTTAGTTTCTTGACaaaaatccattgcaaaggtacCAT
TAGTGATTTCAAAATTATCACAACTGCATTCATTTTCGCCAGTCTGCTTA
AAATAGAGACAGGAACGTTGTAACAGTGTCTTAAACTTACAGTCAACCTC
CTTAATCTTTAATGACGTGTATTCAGACTGGTCATTGTTGGTGGTCTTAT
CAATGAGAGCAAAATCGACCAATCTACCATCTTTGATGATTTGAAACATA
TCTGGCTTACATTCTTCAAACTTGTCAGTGGTGCCGAATGCCTTACATGT
GTCAAATAAGTCCTGCTCTTGGGGGGTTCGTTTCCGTATGCATTCTTCGT
GGAAATTGACGTTGACAGAATCGGATTGACACCAGATGCCCTGGTCAAGT
TCTCCTTTATTGAATGAGTCAGGAATTTTTTCATCTGGTCCACCAAGAGA
AACTATCGCGAAATAACAGCTAGGAGTGAGTGTCTTCAACTCTTTTGAGA
TATTATTGGCAAGTCCAAGTTTAGTACATTCTGAAGTAAAACCACCAGGT
AAAACTATGTCAGCACTTTTCTTACACCATGATGCCATTTTTGGGCAATA
GAAATCACCAGACCCTTTCAGATCCAAAGTGTTGATAGAATGTTGTATTG
CCAAGATAAGGATGAAGTTAAAAACAATTCCAAAATTGCAAGCCATAACT
TTCGACTGATGAATCTTTCAAGGAGTTTTTCTTGTATTGTTCGGTTCAAC
TTCTGAAAAC Run BLAST on NCBI protein sequence of TCONS_00012929-protein >TCONS_00012929-protein ID=TCONS_00012929-protein|Name=TCONS_00012929-protein|organism=Clytia hemisphaerica|type=polypeptide|length=465bp
MDFCQETKPDESFVAGFEALCALINKTLDDCDCKLFNLSDNTTKQSVCDF
LQPKPVQNLIQAAYFLLPYATVETVASVIGIIGNLIVIAVAVRFRIGLAP
CKMLIAHLALYDLFFAIFQFTYALPKFWVAKFIYGKFVCRVLRGAEYLGV
YLAIGVILTISIERFIGIVNPFSRGISKTGLNVILFINGLCGLMACIPIF
YYSSITDLGICEVDWPNGSQDMFIYNMFVLIVYLLIPTIIIATLYSLIIS
TLHGTIVLGKNSFIADPRLRKKRLQDNRRTMYVLIGVVIAFVIFVFPKQV
IMTFLSYNDYGWGSFANQRDMKASTFVILVYIAHFTYPFHVSINPLVYSL
IDARWRKDVRNFFTGHNWRKRSAYSATMSSTMTQRRRSSVATVLDDPCTK
RKSPPTVGKLNPNINNNNNISRPRQLVVTATATGKFETLPTPLTSSDELW
IEENGGQKSKFTFLT Run BLAST on NCBI transcript from alignment at sc0000157:302664..306323 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012929 ID=TCONS_00012929|Name=TCONS_00012929|organism=Clytia hemisphaerica|type=transcript|length=3660bp|location=Sequence derived from alignment at sc0000157:302664..306323 (Clytia hemisphaerica)
GTTTTCAGAAGTTGAACCGAACAATACAAGAAAAACTCCTTGAAAGATTC
ATCAGTCGAAAGTTATGGCTTGCAATTTTGGAATTGTTTTTAACTTCATC
CTTATCTTGGCAATACAACATTCTATCAACACTTTGGATCTGAAAGGGTC
TGGTGATTTCTATTGCCCAAAAATGGCATCATGGTGTAAGAAAAGTGCTG
ACATAGTTTTACCTGGTGGTTTTACTTCAGAATGTACTAAACTTGGACTT
GCCAATAATATCTCAAAAGAGTTGAAGACACTCACTCCTAGCTGTTATTT
CGCGATAGTTTCTCTTGGTGGACCAGATGAAAAAATTCCTGACTCATTCA
ATAAAGGAGAACTTGACCAGGGCATCTGGTGTCAATCCGATTCTGTCAAC
GTCAATTTCCACGAAGAATGCATACGGAAACGAACCCCCCAAGAGCAGGA
CTTATTTGACACATGTAAGGCATTCGGCACCACTGACAAGTTTGAAGAAT
GTAAGCCAGATATGTTTCAAATCATCAAAGATGGTAGATTGGTCGATTTT
GCTCTCATTGATAAGACCACCAACAATGACCAGTCTGAATACACGTCATT
AAAGATTAAGGAGGTTGACTGTAAGTTTAAGACACTGTTACAACGTTCCT
GTCTCTATTTTAAGCAGACTGGCGAAAATGAATGCAGTTGTGATAATTTT
GAAATCACTAATGgtacctttgcaatggatttttGTCAAGAAACTAAACC
GGACGAGAGCTTTGTAGCTGGTTTCGAAGCACTTTGCGCACTCATTAACA
AAACTTTAGACGATTGTGATTGTAAGCTTTTTAACCTTAGTGATAACACA
ACGAAGCAATCCGTTTGTGATTTTCTCCAACCGAAACCAGTTCAAAATTT
GATACAGGCAGCATATTTTCTTCTACCCTACGCGACAGTAGAGACCGTTG
CTTCAGTTATCGGGATTATCGGGAATCTAATCGTCATCGCAGTTGCCGTT
CGATTCCGAATCGGTTTAGCTCCATGCAAAATGTTGATCGCTCACTTGGC
TCTTTACGACCTGTTTTTCGCTATCTTCCAGTTCACCTACGCTTTGCCAA
AATTCTGGGTAGCCAAATTCATATATGGTAAATTCGTATGCAGAGTGTTA
CGAGGTGCAGAATACCTTGGTGTCTATCTAGCTATTGGTGTTATCTTGAC
CATCAGTATTGAACGTTTTATCGGAATCGTTAATCCGTTTAGNACAGACT
GGCGAAAATGAATGCAGTTGTGATAATTTTGAAATCACTAATGgtacctt
tgcaatggatttttGTCAAGAAACTAAACCGGACGAGAGCTTTGTAGCTG
GTTTCGAAGCACTTTGCGCACTCATTAACAAAACTTTAGACGATTGTGAT
TGTAAGCTTTTTAACCTTAGTGATAACACAACGAAGCAATCCGTTTGTGA
TTTTCTCCAACCGAAACCAGTTCAAAATTTGATACAGGCAGCATATTTTC
TTCTACCCTACGCGACAGTAGAGACCGTTGCTTCAGTTATCGGGATTATC
GGGAATCTAATCGTCATCGCAGTTGCCGTTCGATTCCGAATCGGTTTAGC
TCCATGCAAAATGTTGATCGCTCACTTGGCTCTTTACGACCTGTTTTTCG
CTATCTTCCAGTTCACCTACGCTTTACCAAAGTTCTGGGTAGCCAAATTC
ATATATGGTAAATTCGTATGCAGAGTGTTGCGAGGTGCAGAATACCTTGG
TGTCTATCTAGCTATTGGTGTTATCTTGACCATCAGTATTGAACGTTTTA
TCGGAATCGTTAATCCGTTTAGCCGAGGAATCTCCAAGACGGGTTTGAAT
GTCATTCTGTTTATAAACGGCTTGTGTGGATTAATGGCGTGTATCCCGAT
CTTTTATTACAGCAGCATTACCGACCTTGGAATCTGTGAAGTCGATTGGC
CGAATGGAAGCCAGGACATGTTCATATACAATATGTTTGTCCTGATCGTA
TATCTTCTGATCCCAACAATCATCATCGCCACGCTGTATTCATTAATCAT
ATCCACATTACATGGAACCATTGTTCTTGGTAAAAATTCTTTCATCGCTG
ACCCCCGTTTACGGAAAAAGCGTCTCCAAGACAACCGCCGCACCATGTAT
GTCCTGATCGGTGTTGTGATcgcttttgtcatttttgttttcCCTAAACA
AGTCATAATGACATTTTTAAGCTATAATGATTATGGATGGGGCTCTTTCG
CGAATCAACGAGACATGAAAGCCTCCACTTTCGTGATTCTGGTATACATT
GCCCACTTCACTTATCCATTTCACGTTTCCATCAACCCACTTGTGTACAG
CTTAATCGATGCCCGATGGCGTAAAGATGTCCGCAATTTCTTTACTGGTC
ATAACTGGCGTAAACGTAGCGCGTATTCGGCAACCATGTCGTCGACCATG
ACCCAGCGACGTCGCAGTAGTGTTGCCACCGTCCTCGATGATCCATGTAC
TAAGAGAAAAAGTCCACCCACAGTTGGCAAGTTAAACCCAAAcatcaaca
acaataacaacatCTCCAGGCCCAGACAACTGGTTGTAACCGCAACCGCT
ACTGGTAAATTTGAAACTTTACCAACACCGTTAACCAGTAGTGATGAACT
ATGGATTGAGGAAAATGGTggtcaaaaaagtaaatttactTTCTTGACTT
GATGTTAAAGGATGTTGGATACAATTTTATGATATGACAAAGTCCTTGTG
AAAATCATTTACTGTAATACAGTGACTATTTCGAAATTTGCTACATTTTG
TAGTTCGATTTTAAATTTCTTAGTTCGGGAAAAGATGTCAAACTTTGTAG
TGATAAGCTATTTCACGACATTATTTGAGGTTACGTAATGCAATTGAGTA
ATTCGATTCGAACGTTTATATAGTAAATAAGCAAGAATAATCGGAACAGA
CAAACGAATATTCGGATATTCTTTTCGTTGGACTTGATAAAAACAGATcg
attaccgtaagttggtttaatgtcgacatccctcttctaatttcgacacc
cttatTTGCAGATaagaataataggaaggtcagaataGCTGATTTAAGCT
AATTTTTATTGCTTAGCAATCAGAgaggaaaaaaacttttctctattggt
gattctgaccttcatattattcctacCTCTaataaagaagggtgtcggaa
ttagaaaaGGGATGTCGACATGAGACCAACTTACCGTATCATAGAATATT
ATTTATATAAAATATCGAAATGAACGAAGGCCTGAAGGCCAGAAGACAAA
CATAATCAGTTATTCTGGCATATGTACAAATAAACCATGTTGTATGTTAA
GATGATGCAAACTAAGtgaaatgacgtcatcgttcgATAGTACTTTGTAC
TGACTACACTAACAGAGACAAGGTTAAGGGTATatgatttgtttttgttg
tttataTTGACATTTGGTATTAGTAATCATATAAAGTAATGCATAtttgt
tgttgattttgattaagcatacttttgtttataagaaccgTCATTTTTGC
TGAGGTTTGTGCcctaaaaacaaccaaaatgtTTCACTAATCTTTTAAAA
GGAAAAGTTCTTTTTAGATATCAAACTATGGTAAAGGATAGCCGTTGCCC
CAATAAGTAT Coding sequence (CDS) from alignment at sc0000157:302664..306323 >TCONS_00012929 ID=TCONS_00012929|Name=TCONS_00012929|organism=Clytia hemisphaerica|type=CDS|length=1398bp|location=Sequence derived from alignment at sc0000157:302664..306323 (Clytia hemisphaerica)
atggatttttGTCAAGAAACTAAACCGGACGAGAGCTTTGTAGCTGGTTT
CGAAGCACTTTGCGCACTCATTAACAAAACTTTAGACGATTGTGATTGTA
AGCTTTTTAACCTTAGTGATAACACAACGAAGCAATCCGTTTGTGATTTT
CTCCAACCGAAACCAGTTCAAAATTTGATACAGGCAGCATATTTTCTTCT
ACCCTACGCGACAGTAGAGACCGTTGCTTCAGTTATCGGGATTATCGGGA
ATCTAATCGTCATCGCAGTTGCCGTTCGATTCCGAATCGGTTTAGCTCCA
TGCAAAATGTTGATCGCTCACTTGGCTCTTTACGACCTGTTTTTCGCTAT
CTTCCAGTTCACCTACGCTTTACCAAAGTTCTGGGTAGCCAAATTCATAT
ATGGTAAATTCGTATGCAGAGTGTTGCGAGGTGCAGAATACCTTGGTGTC
TATCTAGCTATTGGTGTTATCTTGACCATCAGTATTGAACGTTTTATCGG
AATCGTTAATCCGTTTAGCCGAGGAATCTCCAAGACGGGTTTGAATGTCA
TTCTGTTTATAAACGGCTTGTGTGGATTAATGGCGTGTATCCCGATCTTT
TATTACAGCAGCATTACCGACCTTGGAATCTGTGAAGTCGATTGGCCGAA
TGGAAGCCAGGACATGTTCATATACAATATGTTTGTCCTGATCGTATATC
TTCTGATCCCAACAATCATCATCGCCACGCTGTATTCATTAATCATATCC
ACATTACATGGAACCATTGTTCTTGGTAAAAATTCTTTCATCGCTGACCC
CCGTTTACGGAAAAAGCGTCTCCAAGACAACCGCCGCACCATGTATGTCC
TGATCGGTGTTGTGATcgcttttgtcatttttgttttcCCTAAACAAGTC
ATAATGACATTTTTAAGCTATAATGATTATGGATGGGGCTCTTTCGCGAA
TCAACGAGACATGAAAGCCTCCACTTTCGTGATTCTGGTATACATTGCCC
ACTTCACTTATCCATTTCACGTTTCCATCAACCCACTTGTGTACAGCTTA
ATCGATGCCCGATGGCGTAAAGATGTCCGCAATTTCTTTACTGGTCATAA
CTGGCGTAAACGTAGCGCGTATTCGGCAACCATGTCGTCGACCATGACCC
AGCGACGTCGCAGTAGTGTTGCCACCGTCCTCGATGATCCATGTACTAAG
AGAAAAAGTCCACCCACAGTTGGCAAGTTAAACCCAAAcatcaacaacaa
taacaacatCTCCAGGCCCAGACAACTGGTTGTAACCGCAACCGCTACTG
GTAAATTTGAAACTTTACCAACACCGTTAACCAGTAGTGATGAACTATGG
ATTGAGGAAAATGGTggtcaaaaaagtaaatttactTTCTTGACTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012929-exon-sc0000157-1491911889:302664..306323 | TCONS_00012929-exon-sc0000157-1491911889:302664..306323 | Clytia hemisphaerica | exon |
| TCONS_00012929-exon-sc0000157-1510915933:302664..306323 | TCONS_00012929-exon-sc0000157-1510915933:302664..306323 | Clytia hemisphaerica | exon |
| TCONS_00012929-exon-sc0000157-1575043694:302664..306323 | TCONS_00012929-exon-sc0000157-1575043694:302664..306323 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000157 | supercontig | sc0000157:302664..306323 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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