TCONS_00012929-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00012929-protein
Unique Name	TCONS_00012929-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	465

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00012929-protein ID=TCONS_00012929-protein|Name=TCONS_00012929-protein|organism=Clytia hemisphaerica|type=polypeptide|length=465bp
MDFCQETKPDESFVAGFEALCALINKTLDDCDCKLFNLSDNTTKQSVCDF
LQPKPVQNLIQAAYFLLPYATVETVASVIGIIGNLIVIAVAVRFRIGLAP
CKMLIAHLALYDLFFAIFQFTYALPKFWVAKFIYGKFVCRVLRGAEYLGV
YLAIGVILTISIERFIGIVNPFSRGISKTGLNVILFINGLCGLMACIPIF
YYSSITDLGICEVDWPNGSQDMFIYNMFVLIVYLLIPTIIIATLYSLIIS
TLHGTIVLGKNSFIADPRLRKKRLQDNRRTMYVLIGVVIAFVIFVFPKQV
IMTFLSYNDYGWGSFANQRDMKASTFVILVYIAHFTYPFHVSINPLVYSL
IDARWRKDVRNFFTGHNWRKRSAYSATMSSTMTQRRRSSVATVLDDPCTK
RKSPPTVGKLNPNINNNNNISRPRQLVVTATATGKFETLPTPLTSSDELW
IEENGGQKSKFTFLT

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_007259	XLOC_007259	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00012929	TCONS_00012929	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000276	GPCR_Rhodpsn
IPR017452	GPCR_Rhodpsn_7TM

Vocabulary: **Biological Process**
Term	Definition
GO:0007186	G-protein coupled receptor signaling pathway

Vocabulary: **Molecular Function**
Term	Definition
GO:0004930	G-protein coupled receptor activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007186	G-protein coupled receptor signaling pathway
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004930	G-protein coupled receptor activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000276	G protein-coupled receptor, rhodopsin-like	PRINTS	PR00237	GPCRRHODOPSN	coord: 330..356 score: 19.61 coord: 226..249 score: 23.66 coord: 101..122 score: 24.51 coord: 280..304 score: 19.38 coord: 68..92 score: 21.5 coord: 146..168 score: 22.49
IPR000276	G protein-coupled receptor, rhodopsin-like	PFAM	PF00001	7tm_1	coord: 83..348 e-value: 2.7E-25 score: 89.0
IPR000276	G protein-coupled receptor, rhodopsin-like	PROSITE	PS00237	G_PROTEIN_RECEP_F1_1	coord: 152..168
None	No IPR available	GENE3D	1.20.1070.10		coord: 35..403 e-value: 3.0E-43 score: 147.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 400..420
None	No IPR available	SUPERFAMILY	81321	Family A G protein-coupled receptor-like	coord: 61..384
IPR017452	GPCR, rhodopsin-like, 7TM	PROSITE	PS50262	G_PROTEIN_RECEP_F1_2	coord: 83..348 score: 28.737

Blast

[Close]

BLAST of TCONS_00012929-protein vs. Swiss-Prot (Human)
Match: NK3R (Neuromedin-K receptor OS=Homo sapiens GN=TACR3 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.405e-17
Identity = 93/388 (23.97%), Postives = 159/388 (40.98%), Query Frame = 0

Query:   82 IGNLIVIAVAVRFRIGLAPCKMLIAHLALYDLFFAIFQ----FTYALPKFWVAKFIYGKFVCRVLRGAEYLGVYLAIGVILTISIERFIGIVNPFSRGISKTGLNVILFINGLCGLMACIPIFYYSSITDL---GICEVDWPNGSQDMFIYNMFVLIVYLLIPTIIIATLYSLIISTLHGTIVLGKNSFIADPRLRKKRLQDNRRTMYVLIGVVIAFVIFVFPKQVIMTFLSYNDYGWGSFANQRDMKASTFVILVYIAHFTYPFHVSI-NPLVYSLIDARWRKDVRNFFTGHNWRKRSAYSA-----------TMSSTMTQRRRSSVATVLD--DPCTKRKSPPTVGKLNPNINNNNNISRPRQLVVTATATGKFETLPTPLTSSDE 448
            +GNLIVI + +  +         + +LA  D   A F     F YAL   W     +G   CR         V+ +I  +  I+++R++ I++P    +S T   +++    +   +   P   YS    +    +C V WP G +  F Y++ V+I+    P +I+   Y+++  TL G  + G        +L+ K     R+ + ++I VV+ F I   P  +               A  + +    ++  VY+A F      ++ NP++Y  ++ R+R   +  F    + K S+Y               SS  T  R  S+  V D  D  T R S     +  P   + N  SR      +A+AT  F  + +P TS DE
Sbjct:  101 LGNLIVIWIILAHKRMRTVTNYFLVNLAFSDASMAAFNTLVNFIYALHSEWY----FGANYCRFQNFFPITAVFASIYSMTAIAVDRYMAIIDPLKPRLSATATKIVIGSIWILAFLLAFPQCLYSKTKVMPGRTLCFVQWPEGPKQHFTYHIIVIILVYCFPLLIMGITYTIVGITLWGGEIPGDTCDKYHEQLKAK-----RKVVKMMIIVVMTFAICWLPYHIYFILT----------AIYQQLNRWKYIQQVYLASFWLAMSSTMYNPIIYCCLNKRFRAGFKRAFRWCPFIKVSSYDELELKTTRFHPNRQSSMYTVTRMESMTVVFDPNDADTTRSS--RKKRATPRDPSFNGCSRRNS--KSASATSSF--ISSPYTSVDE 463

The following BLAST results are available for this feature:

BLAST of TCONS_00012929-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00012929-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
NK3R	1.405e-17	23.97	Neuromedin-K receptor OS=Homo sapiens GN=TACR3 PE=...	[more]

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TCONS_00012929-protein (polypeptide) - C. hemisphaerica