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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012889 ID=TCONS_00012889|Name=TCONS_00012889|organism=Clytia hemisphaerica|type=transcript|length=931bp
AAAATAAAAGGATTGATTTTAATGAAACATGAAATTTAGACAAttgtttt
tgcattttgatAGCCAGAGTGTCAGGTGTGATGTCTAACCtcctttcaaa
aagttttcactaCACTTATACAGGTGCTTGATAGCAAACAAACCTTCGTT
GTGGTGTGTTACGGCTCGTTTTATTGCTGTGCTAAATATAGACTATTTTC
CATATATGGTCAATTTGCCACAGTGAGCGTTTGCgttaaatgaataaaaa
aatggCACCATGTTGAATCACTAGTCAAGTCACATCACTGCTCTTTCAAA
TGCTCTGCTGTGATTTCACTTGAACATATTTTAGTTGTAATTAAATTTCA
TTTCTGAATGATGCAATATTGATTGGTCAGCATCAGATGTCTGAGTGGTT
TGATCGGCCAGGGTGAGGTTGGAATATTGACTGTATTTTATATTGTTCAC
CTTTATTTACTTCCAGATGATGTCATTTGAACCTTATTGAACTGATTTTT
GTAATTGGACCATCAAATTCTTTTGAACAACGGATGGTCAACTACCAAAC
CAGatcgaacacctatcgaacTTTACCGCAAAAACCTCTTGATTAATTCG
ATTTAGTTGTATTACAGTTAGGATATTAAAAATTAATTGTAATTGATTTG
ATTGCATGATCAGAGGTGCCGTTGAAAGCCTCATGCTTCAACATGtaggg
cagaaaacaatcataaTCTGGATTTCAGGGATGCACGTGCATATAGTTGG
ACATGTCCCCGATAATTTACCAACACAATTACcaccaaaaaaattaatca
cACTAAACAAAACAACCAAGGAGAATGTTATTCACGTAACCACAGCAATG
TAAAAACTTGTTTACTTCAACACAACAATATAATATCGAACTATTTGCCT
CATTACTTATTCGCACTGATGAAAATTTAGA Run BLAST on NCBI transcript from alignment at sc0000157:509565..514674+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012889 ID=TCONS_00012889|Name=TCONS_00012889|organism=Clytia hemisphaerica|type=transcript|length=5110bp|location=Sequence derived from alignment at sc0000157:509565..514674+ (Clytia hemisphaerica)
AAAATAAAAGGATTGATTTTAATGAAACATGAAATTTAGACAAttgtttt
tgcattttgatAGCCAGAGTGTCAGGTGTGATGTCTAACCtcctttcaaa
aagttttcactaCACTTATACAGGTGCTTGATAGCAAACAAACCTTCGTT
GTGGTGTGTTACGGCTCGTTTTATTGCTGTGCTAAATATAGACTATTTTC
CATATATGGTCAATTTGCCACAGTGAGCGTTTGCgttaaatgaataaaaa
aatggCACCATGTTGAATCACTAGTCAAGTCACATCACTGCTCTTTCAAA
TGCTCTGCTGTGATTTCACTTGAACATATTTTAGTTGTAATTAAATTTCA
TTTCTGAATGATGCAATATTGATTGGTCAGCATCAGATGTCTGAGTGGTT
TGATCGGCCAGGGTGAGGTTGGAATATTGACTGTATTTTATATTGTTCAC
CTTTATTTACTTCCAGATGATGTCATTTGAACCTTATTGAACTGATTTTT
GTAATTGGACCATCAAATTCTTTTGAACAACGGATGGTCAACTACCAAAC
CAGatcgaacacctatcgaacTTTACCGCAAAAACCTCTTGATTAATTCG
ATTTAGTTGTATTACAGTTAGGATATTAAAAATTAATTGTAATTGATTTG
ATTGCATGATCAGAGGTGCCGTTGAAAGCCTCATGCTTCAACATGtaggg
cagaaaacaatcataaTCTGGATTTCAGGTGATCAAAATCAAACACATCG
AACTGCGATTGAATAAatatcgaaccaatcgaactgtTATCAGATTACTA
TCGAACAGTAATGGGCTGTTCCAGTTTTAGTTTATTATCCTCTAGTGGAC
ATGGAATTTCCTtagcaaaaagtttagaaaaagtTGCAGAATTTCTGttg
taaaatcccaaaaattcctaaaaattcatggaattccgatacttcGGCCA
CAAAATTGGGTGAAATTTATGGAATTCTGATATCTTTTGCTTAAAAGTTG
GCTGAAGTTACTTAACAAatgtgatttttaaaatttgtgtCATCCACTAG
GGGATAATATGCTTTTTTTCTGCAACAGCCCAATGGAACTTTACCAGAAT
TTCTTGGTTCAATTACTCTTCAATTTGGTTTGGTAATTATGTGGCGAAAA
TGGGCCTACCTACAGGCCTaatgttgtttgtttttttttcaaatctcttt
AATCACCAAAATACTTggtataataaaataaaaaatataaaatatctcTG
TTTTGTTTACAATGTTACACAGGTtatacatttttctttcttttttttat
atatacatATGGGTGTTGTGTGCCCTATAGAAAAATCACTGAGCGGATGT
AGATATCAGGGGAATCCccttcgaaaaaataaaaaataaaaattgtacGC
GGACCTAGATGGAAGCATAAGAGAATAATTTGTTGTATAAAAATACAGTT
AGCTAGATTGAAATGAACACCTAccatgaagtcgggtaacttgcatcagt
ggaggctaacatgcatagccctcaaatgaatgagcTGGCTGttccttaaa
atacaaactttaagttaaatcaaaacaaaaatggtagagtagagctgggA
GCTGAGCTGCGtaattcatttgttttgaaattttgctgcaataTCATTAT
GCAATTGATTTATGCATGACattacttttattattattattttatttaaa
ttgACCAGAAAATGTTATCAAACAATAACACACTGTGCAGCTACCCTGTT
TGATTATGTCACCCTTAACCAGGAGGAAATATAGGAGTGAAAGAATCCCT
TATTGCAAataatttgatcgaaaataAAAGAAGATTTAAGTGGTCATTCA
CTTTCAGATTTTTCAGATAGGACCTTTTCGGATTCCTCGACTTAATTTCT
TGGAAAACACTGAATCCTTTTAGTAAAGCAGCTCAGGTTCTATAAACAAA
ATTATACACTGTATAAAATTCTATATTATATTGGCAGTAAAGCTGACGTA
GACCTACAGgctaagaaacaaaaaagtaaaatgagtACTGAGCAACGGTG
TGACTTAATTCATAGTGAAATAGGAGGCAAATAAAGGACAAGGAATCCTT
TGTAAGCCGTGCCTTTCTAGTTTACTttcattattcttttactgTTTAGG
GATGCACGTGCATATAGTTAGACATGTCCCCGATAGTTTACCAACACAAT
TACcaccaaaaaaattaatcacACTAAACAAAACAACCATTTTTATGTTA
TTCACGTAATCACAGCAATGTAAAAACTTGTTTACTTCAACACAACAATA
TAATATCGAACTATTTGCCTTATTACTTATTCGCACtgatgaaaatttag
agaatgATTTATTCCTTAACCATAtctttattaccaaaataattttctat
atAATAGCTAAGGACACCATGTAATGACCTGATTTACTTTGAANacacct
ttcccgtaattcaaatttctcagaaatggcccgggcaaatgtgcgctcca
ccgttgtgtataaaattgtttgggaggtaaaaaacgcgtttttgcctgcg
aggggttagggaaagtgggatttgagcctctaacttttgacagcgatctt
cttttggcaaaatattttcagggtggtataacatcatgaatagattgaac
atactaaaatttgaggggattttgttcgacagaacttaagaaaagctcaa
aaaacctactttccctaagggaacgcaggcaaaaacgggtttgtttacct
ccagggaccaaacggtggagagcatcaaaataatgcgcgcgcattagttt
taggaattacgggaaaggtgtattgaatatggatataaataatttgaaat
cacctcacatgtacaattaaaatttttcttgaacttggagattttcttcc
ccgcgtgcattttaaaacgtggaaNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgttatctgagat
ttaaagcattttgaaatcttttgaggacatcaattattattttaacattt
gtaaaggaaatatttatccgcatctttgcggctcttgtatTGGCAGTAAA
GCTGACGTAGACCTACAGgctaagaaacaaaaaattaaaatgagtaCTGA
GCAACGGTGTGACTTAATTCATAGGAGGCAAATAAAGATTAAAGGACAAG
GAATCCTTTGTAAGCCGTGCTTTTCTAGTTTACTTTCATTATTCTCTTAC
TGTTCAGGGATGCACGTGCATATAGTTGGACATGTCCCCGATAATTTACC
AACACAATTACcaccaaaaaaattaatcacACTAAACAAAACAACCAAGG
AGAATGTTATTCACGTAACCACAGCAATGTAAAAACTTGTTTACTTCAAC
ACAACAATATAATATCGAACTATTTGCCTCATTACTTATTCGCACTGATG
AAAATTTAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012889-exon-sc0000157-1491911889:509565..510292 | TCONS_00012889-exon-sc0000157-1491911889:509565..510292 | Clytia hemisphaerica | exon |
| TCONS_00012889-exon-sc0000157-1510915933:509565..510292 | TCONS_00012889-exon-sc0000157-1510915933:509565..510292 | Clytia hemisphaerica | exon |
| TCONS_00012889-exon-sc0000157-1575043694:509565..510292 | TCONS_00012889-exon-sc0000157-1575043694:509565..510292 | Clytia hemisphaerica | exon |
| TCONS_00012889-exon-sc0000157-1491911889:514472..514674 | TCONS_00012889-exon-sc0000157-1491911889:514472..514674 | Clytia hemisphaerica | exon |
| TCONS_00012889-exon-sc0000157-1510915933:514472..514674 | TCONS_00012889-exon-sc0000157-1510915933:514472..514674 | Clytia hemisphaerica | exon |
| TCONS_00012889-exon-sc0000157-1575043694:514472..514674 | TCONS_00012889-exon-sc0000157-1575043694:514472..514674 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000157 | supercontig | sc0000157:509565..514674 + |
Blast
The following BLAST results are available for this feature:
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