TCONS_00012884 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00012884
Unique Name	TCONS_00012884
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2410

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000157:262994..268747+
coding sequence from alignment at sc0000157:262994..268747+

transcript sequence

>TCONS_00012884 ID=TCONS_00012884|Name=TCONS_00012884|organism=Clytia hemisphaerica|type=transcript|length=2410bp
tttttgtctatttttagtaatgcaggatttttTAGATAAATCCCCTCGAA
CGATCACTTGTTCGACGcccccacttgttcgacaataatTGTCAAACAAG
TGCAAGTGGGCGTCGAGCATGTGggtgtcgaacaagtgggttacAAGAGT
GGGTTGTCGATATTTTAcgaatttgtcgaacaagtgAGTTGTCGAACAAA
TGGGTTGTCGAACATGTGACATATCACCAGAAAAAGGTCTGGCATCGCAT
TTGTCTGATGTCAAAAATTTGCGTATGTAGattacaaaatataaacaatG
ATTGAATGTACACCCCATGTAGTCAATATCTTTACACAAATAAACCTAAT
TTGTATTTAAAAACCTATTTCCCAAGGAGCAACAAGCCATTAAGTCTAAA
CATCCAAAATACGTTACAAAAATAACGACCGGGCAAAATCCAACCAAACT
TTTCCAAATAAGAAtttgcgaaatcgaaagtagATTTTGTAAACATGTGG
GTTTCTAGACTTACGGTCTCCGAACAAGAGTAATGGGAGAAAACTGTATG
TTTCTTTTCCAAGACAATTTTTTTCGGTGACGGCATTTCGGGAGTCAATA
TATTTTCCATCAATTTAAACCCCTCTAATTCTTTTTCGACCCGTAAACAC
AAGAGGGTTCACAAAACCATGGCGGTTGGCAAAAACAAGAGACTTTCCAA
AGGAAAGAAAGGAACCAAAAAGAAGATCATAGATCCCTTTGCAAAGAAAG
ACTGGTATGATGTAAAAATTCCATCAAACTTCAATGTGAGGAACATTGGC
AAAACACCAGTAACCAGAACTATTGGAACAAAAATTGCATCTGATGCCTT
GAAAGGACGTGTTTTTGAAATGGCCCAAGCTGATTTGAACAATGATGAAG
TTTCCTTCAGAAAATACAGATTGATGGTTGAAGATGTTCAAGGCAGAAAT
GTTATGACCAATTTCCATGGTATGTCAATGACCACTGATAAATTAAGATC
ACTTGTCAAGAAATGGCAAACATGCATTGAAGCCCATACTGATGTCAAAA
CCACTGATGGATATTTATTAAGATTCTTTGCCATTGGCTTCACCAAGAAG
AGAAATAACTCAACAAAGAAAACAGCATATGCTAAATCAACCCAAATAAG
AGCCATCAGAAAGAAGATGGTTGAGATCATGAGTCGTGAAGTTACCACCA
AAGATTTAAAAGATGTTGTCACCAAACTTTTGCCAGACAGCATGGGTGCT
GATATGGAGAAATCTTGCCAAAGCATCTATCCACTTCATGACTGTTACAT
TCGTAAAGTAAAAGTATTGAAGAAACCTAAATTTGATGATTGAAGATGTA
CTAACTCCATGTTCGGTGATTAAAAAAAGCTCCCTCTACTGATTACCTGA
AGATAAAAGGCTTTCCGGAATCATTTGAAGCTGAGAAcagaatatatata
tatatttttttatcgtCTCTAGGtagtatgtacatttaaaaaaaaataat
aataaagagCCCTAAATATATGTAAgtttccatttttcaaaaaatgtaca
aaCGGAGTGACCGGTATAGATCACAGGGACAAAAGCGGTCACTAGCGGGA
AACAATACCCATCCGTTGCGGGCGTATCCGCAGGTGAGGATAACTTCTCC
CCAGATTACGCTCGGTCCGGACTGTGGGAATATGTTATCATTCTTTGATT
GAGCCATTCCAACAACCACCGATGTTTAATAATACATTGTTGGCTGGTAG
TTTGGCAAGATAAGCAGCCCATTTAAAACCCATGAAAGCTTTGCTCTTGT
GGATCCTGTCTTGGGTAACATCTTTTCTAGAGCTTACACGTAGACTTTTC
GCTGGATTCTGCAGGAAATTTGTGGTACAATTTTGCTTGAATAAGTTGTA
TCATGAAACACTGCAGAATATAGATTCTTTAGTTTTTACGTGGAGTTGTA
AAATACCATCTTACCTATTCCCCCGTGACTAATGTACATAGTTAAATTCC
TGAATTGTTGCTGATAGAATTGTTCAATGATTAAAAAAAGCTCCCTCTAC
TGACTACCTGAAGATAAAAGGCTTTCCGGAATCATTTGAAGCTGAGAACA
GAATATATGTTATCATTCTTTGTTTGAGCCATTCCAACAACCACCAATGT
TTAATAATACATTGTTGGCTGGTAGTTTGGCAAGATAAGCAGCCCATTTA
AAACCCATGAAAGCTTTGCTCTTGTGGATCCTGTCTTGGGTAACATCTTT
TCTAGAGCTTACACGTAGACTTTTCGCTCGATTCTGCAGGAAATTTGTGG
TACAATTTTGCTTGTGAATAAGTTGTATCATGAAACACTGCAGAATATAG
ATTCTTTAGTTTTTACGTGGAGTTGTAAAATACCATCTTACCTATTCCCC
CGTGACTAAT

Run BLAST on NCBI

protein sequence of TCONS_00012884-protein

>TCONS_00012884-protein ID=TCONS_00012884-protein|Name=TCONS_00012884-protein|organism=Clytia hemisphaerica|type=polypeptide|length=224bp
MAVGKNKRLSKGKKGTKKKIIDPFAKKDWYDVKIPSNFNVRNIGKTPVTR
TIGTKIASDALKGRVFEMAQADLNNDEVSFRKYRLMVEDVQGRNVMTNFH
GMSMTTDKLRSLVKKWQTCIEAHTDVKTTDGYLLRFFAIGFTKKRNNSTK
KTAYAKSTQIRAIRKKMVEIMSREVTTKDLKDVVTKLLPDSMGADMEKSC
QSIYPLHDCYIRKVKVLKKPKFDD

Run BLAST on NCBI

transcript from alignment at sc0000157:262994..268747+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00012884 ID=TCONS_00012884|Name=TCONS_00012884|organism=Clytia hemisphaerica|type=transcript|length=5754bp|location=Sequence derived from alignment at sc0000157:262994..268747+ (Clytia hemisphaerica)
tttttgtctatttttagtaatgcaggatttttTAGATAAATCCCCTCGAA
CGATCACTTGTTCGACGcccccacttgttcgacaataatTGTCAAACAAG
TGCAAGTGGGCGTCGAGCATGTGggtgtcgaacaagtgggttacAAGAGT
GGGTTGTCGATATTTTAcgaatttgtcgaacaagtgAGTTGTCGAACAAA
TGGGTTGTCGAACATGTGACATATCACCAGAAAAAGGTCTGGCATCGCAT
TTGTCTGATGTCAAAAATTTGCGTATGTAGattacaaaatataaacaatG
ATTGAATGTACACCCCATGTAGTCAATATCTTTACACAAATAAACCTAAT
TTGTATTTAAAAACCTATTTCCCAAGGAGCAACAAGCCATTAAGTCTAAA
CATCCAAAATACGTTACAAAAATAACGACCGGGCAAAATCCAACCAAACT
TTTCCAAATAAGAAtttgcgaaatcgaaagtagATTTTGTAAACATGTGG
GTTTCTAGACTTACGGTCTCCGAACAAGAGTAATGGGAGAAAACTGTATG
TTTCTTTTCCAAGACAATTTTTTTCGGTGACGGCATTTCGGGAGTCAATA
TATTTTCCATCAATTTAAACCCCTCTAATTCTTTTTCGACCCGTAAACAC
AAGAGGGTTCACAAAACCATGGCGGTTGGCAAAAACAAGAGACTTTCCAA
AGGAAAGAAAGGAACCAAAAAGAAGATGTAAGACCGAAATTTGTTTCTTC
TAGTATTGCTTGATAATATGGCTGCTAGTACACATTTCCACATTCACCCG
ACACTTGTGATTGGTGCGATAATAGTGGATATTGTTTATGGTTATACTTG
ACAAATACTTCGGCTTTCTCTTTTCAGCATAGATCCCTTTGCAAAGAAAG
ACTGGTATGATGTAAAAATTCCATCAAACTTCAATGTGAGGAACATTGGC
AAAACACCAGTAACCAGAACTATTGGAACAAGTAAGTATTTACCTTGTGA
GTTTGTTATTGTTGACTTAATTTTGAGGCTCAAGAGCTTGAAAGTTAGTT
GGGACCATCACTGGATGTACAATTCCTGACAAGCTTTCCTAACCTGCTGA
ATACAAATCTAAGTCTAATATATTTCTCATTTGGCTTACTACGGGACATA
GTTCTTCATTCGCATAGCTGCAGGATTCCCTTGATTATCCAACCTGTATG
ATCTAAAGGGCCAGTCTCTATGCTAGAGTAAAGTTGATAGATACCAGTTC
TATGTATTCTAGTTACTAGTACTGTTTACGTCAACTACACCATCAGTCTT
GGGAATTTAATAAGATGTCAAAAATCTAGATATCATATAAAGGGCTGCTT
CATGGAAAATTATTCATTGGTATTGACTACTTCAGGTTTATATACTTTCG
CAAGTAGAAATTTTTGTGAGAacagaaaattgcaaaatttaccAGTTTAC
CAGTTCTGTTTACATCAACTACACCATATGAGTTTGTTATTGTTGACTTA
ATTTTGAGGCTCTAGAGCTTGGAAGTTTGTTGGGATCATCATTGGTTGTA
CCATTCCTGGCAAGCTTTCCATTCCTAACCTGCATGTTCAAATTTAAGTC
TAATATTTTTTCATCTGGGTTACTACGGGACATAGTTCTTCATCTGCATA
GCTGCAGGATTCCCTTGATTATTCTACCTTTATAATCTAAGGGCCAGTCT
CTATGCTAGAGTAAAGTTGATAGATACCAGTTCTATGTATTCTAGTTACT
AGTACTGTTTACGTCAACTACACCATCAGTCTTGGGAATTTAATAAGATG
TCAAAAATCTAGATATCAATATAAAGGGCTGCTTCATGGAAAATTATTCA
TTGTATTGACTACTTCAGGTTTACATACTTTCGCAAGTAGAAATTTTTGT
GAGAacagaaaattgcaaaatttaccagtatggatttcgtgtaactaacg
ctgaagatcaatttttagctttcctttggctaaatttgctttcgctcGCT
TACGCTCCCGTCAATTTTATGTATTAATcatgttggcgcatgcgcctctt
ttcccatcttgcacccttattgaaaaatttaattttggtacaaaagaaat
tttgcttggcttGAGGCTTGCTGTATGGAAAAATATCTTCAGCTCGAGAT
TTGAGGAATCCATACTGGAAAATTTACAAcatttatttttgcaaatttga
ggaaaatttatttttgccatCATTGACTTCTGAGTCATTATGtcaaaaaa
taaggtaaaaaaaatgctaaaaatattttacatttgttacaatttagaag
ttttgtaaattttcaagaatttttaacGAGTAAAACTTAGGGAATTGCCC
TATTAAGAATTTTCAATTATATTAACTTTAAGGAAAAAGgccaaatttcg
tgaaaatgcTTTTAGTAACTGGAATTCTGAGGCAAGCCTAGACGATGATC
ACATTGTGAAAAAGGCTTGGAAACAACTTAAGCTGTTTCAGTTAACCTCT
TTGGAAAGTTTAAAAGTAACTTagtaaaattttgttgataCCACTGAAAA
GTTCTCAGAAATTGAATAGACAAATACTTGTGACCACTGATTTAATGAAA
AGGATAACTTAAACTTATTTCAGTCTGCTTACCTTTTCAGAAATTGCATC
TGATGCCTTGAAAGGACGTGTTTTTGAAATGGCCCAAGCTGATTTGAACA
ATGATGAAGTTTCCTTCAGAAAATACAGATTGATGGTTGAAGATGTTCAA
GGCAGAAATGTTATGACCAATTTCCATGGTATGTCAATGACCACTGATAA
ATTAAGATCACTTGTCAAGAAATGGCAAACATGCATTGAAGCCCATACTG
ATGTCAAAACCACTGATGGATATTTATTAAGATTCTTTGCCATTGGCTTC
ACCAAGAAGAGAAATAACTCAACAAAGAAAACAGCATATGCTAAATCAAC
CCAAATAAGAGCCATCAGAAAGAAGATGGTTGAGATCATGAGTCGTGAAG
TTACCACCAAAGATTTAAAAGATGTTGTCACCAAACTTTTGCCAGACAGC
ATGGGTGCTGATATGGAGAAATCTTGCCAAAGCATCTATCCACTTCATGA
CTGTTACATTCGTAAAGTAAAAGTATTGAAGAAACCTAAATTTGATGGTA
AGAATTTTTTTAGGTTGAGCAGTAATTCTTGAAATAAACTGTCAGCCATT
CCAACAACCACCGATGTTTGATAATACATTGTTGGCTGGTAGTTTGGCAA
GATCAGCAGCCCATTTAAAACCCATGAAAGCTTTGCTCTTGTGGATCCTG
TCTTGGGCAACATTTCTTCTTTTGAAAAGTTTCCTCTCTTCTGTCATCGC
TTAAAAATCTACTTAAACCTGGAAGTCACAAGTGTGTCAAGTTTAACGTC
CTGTATTTACTGCTGTGCGTCTGGCTGGGCTTAGCAAATGTGATAGTGAA
AGGAGTGTTAAGTGTTATTTCTCACACAAGCTCTAGAATGCTCTTTGGTA
GTGATAAATAAATTTAGATATTGCATAGTTGCAGGATTCCCTTGATGACC
TACATGTCATTAATGGGCCAGTCTCTGTGCAAGAGCAATCCCATGTAACA
AGTACcaacttcattttttccataAATGGCGTTGTCAAGATTACCATACA
ACCAAATTCTTTGTTAAGTCATTATTCGTGATTACTATTTAGTTATTTTT
GTTCAACTAACAAGTCTCTTGACTTAGCCATTCTAACAACCACTTGTTCT
ATCAAAGTGTTCAAGTAGCTGGTAGTTTGGCAATATCATTTAAGCTCATT
TAAAACCCATGAGGGTGATTTTATGAAGCCTTTGTCTTGGGAAACATCCT
GAGTAATTTGTTATATGCCTCCTGCAGGAAATTTGTGGTACAGCCTACTT
TTTATAAGTTGTTTCATGAAACACTGCAGACCATAGACTTGTTAGTTTTT
ACGTGGAGTTAGTGGTGATTACCACGCCAACTCCCCCGTGACTAACATAC
AgaacaattttgaatttttgctaATTATTTTTAGGAAAGCACTAGTTGAA
GTCAAGGTTTGAAAAGTGTTTTCTAATGATCAATtgcaaaactttgtttt
gatctgGAAATAAGAATAGTACAatgccagacggtgtcaatcgaacgaat
cgaacgccgaatcaattgaacacaatcgaataattgcaattcgattgtcg
aactcaatcgaatcgcaatcgaatattacccaggatttgccgttcaattg
cctcgattacgttcgattatattcgattacgtttgattgattcaattgta
ttcgaTTTTATTTGCCCTCGTACGGTACTTAAAACGCTCGGACGCCCAca
ctaaaaaagctctaaaggattgatttaatttaatcgcaatcaaacttatC
GAAAATGATCGTAATGGATTAAAATCGAAGatcaatcgaatgtaatcgaa
ccaatcgaacatagtcgaCTATCAATCAAACCTTACATAAACGCAATAga
acacaattgaatattacccaggaatcagcCATTCGATTGCATACGACAAT
CGAATACCAattattcgattatgttcgattggttcgattgtgaTTTTCGT
TTGAagtcgttcgattgacaccatcTGGACAATGGCCTTCCCTGCTGCAA
GTGAGAATTCTTTCAATTGGTCTCGTTCATAGATTGAAGATGTACTAACT
CCATGTTCGGTGATTAAAAAAAGCTCCCTCTACTGATTACCTGAAGATAA
AAGGCTTTCCGGAATCATTTGAAGCTGAGAAcagaatatatatatatatt
tttttatcgtCTCTAGGtagtatgtacatttaaaaaaaaataataataaa
gagCCCTAAATATATGTAAgtttccatttttcaaaaaatgtacaaaCGGA
GTGACCGGTATAGATCACAGGGACAAAAGCGGTCACTAGCGGGAAACAAT
ACCCATCCGTTGCGGGCGTATCCGCAGGTGAGGATAACTTCTCCCCAGAT
TACGCTCGGTCCGGACTGTGGGAATATGTTATCATTCTTTGATTGAGCCA
TTCCAACAACCACCGATGTTTAATAATACATTGTTGGCTGGTAGTTTGGC
AAGATAAGCAGCCCATTTAAAACCCATGAAAGCTTTGCTCTTGTGGATCC
TGTCTTGGGTAACATCTTTTCTAGAGCTTACACGTAGACTTTTCGCTGGA
TTCTGCAGGAAATTTGTGGTACAATTTTGCTTGAATAAGTTGTATCATGA
AACACTGCAGAATATAGATTCTTTAGTTTTTACGTGGAGTTGTAAAATAC
CATCTTACCTATTCCCCCGTGACTAATGTACATAGTTAAATTCCTGAATT
GTTGCTGATAGAATTGTTCAATGATTAAAAAAAGCTCCCTCTACTGACTA
CCTGAAGATAAAAGGCTTTCCGGAATCATTTGAAGCTGAGAACAGAATAT
ATGTTATCATTCTTTGTTTGAGCCATTCCAACAACCACCAATGTTTAATA
ATACATTGTTGGCTGGTAGTTTGGCAAGATAAGCAGCCCATTTAAAACCC
ATGAAAGCTTTGCTCTTGTGGATCCTGTCTTGGGTAACATCTTTTCTAGA
GCTTACACGTAGACTTTTCGCTCGATTCTGCAGGAAATTTGTGGTACAAT
TTTGCTTGTGAATAAGTTGTATCATGAAACACTGCAGAATATAGATTCTT
TAGTTTTTACGTGGAGTTGTAAAATACCATCTTACCTATTCCCCCGTGAC
TAAT

Coding sequence (CDS) from alignment at sc0000157:262994..268747+

>TCONS_00012884 ID=TCONS_00012884|Name=TCONS_00012884|organism=Clytia hemisphaerica|type=CDS|length=2700bp|location=Sequence derived from alignment at sc0000157:262994..268747+ (Clytia hemisphaerica)
ATGGCGGTTGGCAAAAACAAGAGACTTTCCAAAGGAAAGAAAGGAACCAA
AAAGAAGATCATAGATCCCTTTGCAAAGAAAGACTGGTATGATGTAAAAA
TTCCATCAAACTTCAATGTGAGGAACATTGGCAAAACACCAGTAACCAGA
ACTATTGGAACAAAAATTGCATCTGATGCCTTGAAAGGACGTGTTTTTGA
AATGGCCCAAGCTGATTTGAACAATGATGAAGTTTCCTTCAGAAAATACA
GATTGATGGTTGAAGATGTTCAAGGCAGAAATGTTATGACCAATTTCCAT
GGTATGTCAATGACCACTGATAAATTAAGATCACTTGTCAAGAAATGGCA
AACATGCATTGAAGCCCATACTGATGTCAAAACCACTGATGGATATTTAT
TAAGATTCTTTGCCATTGGCTTCACCAAGAAGAGAAATAACTCAACAAAG
AAAACAGCATATGCTAAATCAACCCAAATAAGAGCCATCAGAAAGAAGAT
GGTTGAGATCATGAGTCGTGAAGTTACCACCAAAGATTTAAAAGATGTTG
TCACCAAACTTTTGCCAGACAGCATGGGTGCTGATATGGAGAAATCTTGC
CAAAGCATCTATCCACTTCATGACTGTTACATTCGTAAAGTAAAAGTATT
GAAGAAACCTAAATTTGATGATTGAATGGCGGTTGGCAAAAACAAGAGAC
TTTCCAAAGGAAAGAAAGGAACCAAAAAGAAGATCATAGATCCCTTTGCA
AAGAAAGACTGGTATGATGTAAAAATTCCATCAAACTTCAATGTGAGGAA
CATTGGCAAAACACCAGTAACCAGAACTATTGGAACAAAAATTGCATCTG
ATGCCTTGAAAGGACGTGTTTTTGAAATGGCCCAAGCTGATTTGAACAAT
GATGAAGTTTCCTTCAGAAAATACAGATTGATGGTTGAAGATGTTCAAGG
CAGAAATGTTATGACCAATTTCCATGGTATGTCAATGACCACTGATAAAT
TAAGATCACTTGTCAAGAAATGGCAAACATGCATTGAAGCCCATACTGAT
GTCAAAACCACTGATGGATATTTATTAAGATTCTTTGCCATTGGCTTCAC
CAAGAAGAGAAATAACTCAACAAAGAAAACAGCATATGCTAAATCAACCC
AAATAAGAGCCATCAGAAAGAAGATGGTTGAGATCATGAGTCGTGAAGTT
ACCACCAAAGATTTAAAAGATGTTGTCACCAAACTTTTGCCAGACAGCAT
GGGTGCTGATATGGAGAAATCTTGCCAAAGCATCTATCCACTTCATGACT
GTTACATTCGTAAAGTAAAAGTATTGAAGAAACCTAAATTTGATGATTGA
ATGGCGGTTGGCAAAAACAAGAGACTTTCCAAAGGAAAGAAAGGAACCAA
AAAGAAGATCATAGATCCCTTTGCAAAGAAAGACTGGTATGATGTAAAAA
TTCCATCAAACTTCAATGTGAGGAACATTGGCAAAACACCAGTAACCAGA
ACTATTGGAACAAAAATTGCATCTGATGCCTTGAAAGGACGTGTTTTTGA
AATGGCCCAAGCTGATTTGAACAATGATGAAGTTTCCTTCAGAAAATACA
GATTGATGGTTGAAGATGTTCAAGGCAGAAATGTTATGACCAATTTCCAT
GGTATGTCAATGACCACTGATAAATTAAGATCACTTGTCAAGAAATGGCA
AACATGCATTGAAGCCCATACTGATGTCAAAACCACTGATGGATATTTAT
TAAGATTCTTTGCCATTGGCTTCACCAAGAAGAGAAATAACTCAACAAAG
AAAACAGCATATGCTAAATCAACCCAAATAAGAGCCATCAGAAAGAAGAT
GGTTGAGATCATGAGTCGTGAAGTTACCACCAAAGATTTAAAAGATGTTG
TCACCAAACTTTTGCCAGACAGCATGGGTGCTGATATGGAGAAATCTTGC
CAAAGCATCTATCCACTTCATGACTGTTACATTCGTAAAGTAAAAGTATT
GAAGAAACCTAAATTTGATGATTGAATGGCGGTTGGCAAAAACAAGAGAC
TTTCCAAAGGAAAGAAAGGAACCAAAAAGAAGATCATAGATCCCTTTGCA
AAGAAAGACTGGTATGATGTAAAAATTCCATCAAACTTCAATGTGAGGAA
CATTGGCAAAACACCAGTAACCAGAACTATTGGAACAAAAATTGCATCTG
ATGCCTTGAAAGGACGTGTTTTTGAAATGGCCCAAGCTGATTTGAACAAT
GATGAAGTTTCCTTCAGAAAATACAGATTGATGGTTGAAGATGTTCAAGG
CAGAAATGTTATGACCAATTTCCATGGTATGTCAATGACCACTGATAAAT
TAAGATCACTTGTCAAGAAATGGCAAACATGCATTGAAGCCCATACTGAT
GTCAAAACCACTGATGGATATTTATTAAGATTCTTTGCCATTGGCTTCAC
CAAGAAGAGAAATAACTCAACAAAGAAAACAGCATATGCTAAATCAACCC
AAATAAGAGCCATCAGAAAGAAGATGGTTGAGATCATGAGTCGTGAAGTT
ACCACCAAAGATTTAAAAGATGTTGTCACCAAACTTTTGCCAGACAGCAT
GGGTGCTGATATGGAGAAATCTTGCCAAAGCATCTATCCACTTCATGACT
GTTACATTCGTAAAGTAAAAGTATTGAAGAAACCTAAATTTGATGATTGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_007226	XLOC_007226	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00012884-exon-sc0000157-1491911889:262994..263720	TCONS_00012884-exon-sc0000157-1491911889:262994..263720	Clytia hemisphaerica	exon
TCONS_00012884-exon-sc0000157-1510915933:262994..263720	TCONS_00012884-exon-sc0000157-1510915933:262994..263720	Clytia hemisphaerica	exon
TCONS_00012884-exon-sc0000157-1575043694:262994..263720	TCONS_00012884-exon-sc0000157-1575043694:262994..263720	Clytia hemisphaerica	exon
TCONS_00012884-exon-sc0000157-1491911889:263871..263974	TCONS_00012884-exon-sc0000157-1491911889:263871..263974	Clytia hemisphaerica	exon
TCONS_00012884-exon-sc0000157-1510915933:263871..263974	TCONS_00012884-exon-sc0000157-1510915933:263871..263974	Clytia hemisphaerica	exon
TCONS_00012884-exon-sc0000157-1575043694:263871..263974	TCONS_00012884-exon-sc0000157-1575043694:263871..263974	Clytia hemisphaerica	exon
TCONS_00012884-exon-sc0000157-1491911889:265634..266140	TCONS_00012884-exon-sc0000157-1491911889:265634..266140	Clytia hemisphaerica	exon
TCONS_00012884-exon-sc0000157-1510915933:265634..266140	TCONS_00012884-exon-sc0000157-1510915933:265634..266140	Clytia hemisphaerica	exon
TCONS_00012884-exon-sc0000157-1575043694:265634..266140	TCONS_00012884-exon-sc0000157-1575043694:265634..266140	Clytia hemisphaerica	exon
TCONS_00012884-exon-sc0000157-1491911889:267676..268747	TCONS_00012884-exon-sc0000157-1491911889:267676..268747	Clytia hemisphaerica	exon
TCONS_00012884-exon-sc0000157-1510915933:267676..268747	TCONS_00012884-exon-sc0000157-1510915933:267676..268747	Clytia hemisphaerica	exon
TCONS_00012884-exon-sc0000157-1575043694:267676..268747	TCONS_00012884-exon-sc0000157-1575043694:267676..268747	Clytia hemisphaerica	exon

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00012884-protein	TCONS_00012884-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000157	supercontig	sc0000157:262994..268747 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.96781	6.48457	3.53766	3.00543	32.5576	30.593	18.4018	19.1574	13.815	17.7776	8.24237	12.4508	9.73442	7.57772	12.6968	20.2132	17.1546	12.5186	7.92266	8.43163	14.4213	19.72	6.84752	6.64249	8.42722	15.04	20.0602	10.9294	10.0856	6.59347

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR001593	Ribosomal_S3Ae
IPR027500	Ribosomal_S1/3_euk

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0005622	intracellular

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome

Blast

[Close]

BLAST of TCONS_00012884 vs. Swiss-Prot (Human)
Match: RS3A (40S ribosomal protein S3a OS=Homo sapiens GN=RPS3A PE=1 SV=2)

HSP 1 Score: 325.094 bits (832), Expect = 3.350e-104
Identity = 146/204 (71.57%), Postives = 178/204 (87.25%), Query Frame = 3

Query:  726 IIDPFAKKDWYDVKIPSNFNVRNIGKTPVTRTIGTKIASDALKGRVFEMAQADLNNDEVSFRKYRLMVEDVQGRNVMTNFHGMSMTTDKLRSLVKKWQTCIEAHTDVKTTDGYLLRFFAIGFTKKRNNSTKKTAYAKSTQIRAIRKKMVEIMSREVTTKDLKDVVTKLLPDSMGADMEKSCQSIYPLHDCYIRKVKVLKKPKFD 1337
            ++DPF+KKDWYDVK P+ FN+RNIGKT VTRT GTKIASD LKGRVFE++ ADL NDEV+FRK++L+ EDVQG+N +TNFHGM +T DK+ S+VKKWQT IEAH DVKTTDGYLLR F +GFTKKRNN  +KT+YA+  Q+R IRKKM+EIM+REV T DLK+VV KL+PDS+G D+EK+CQSIYPLHD ++RKVK+LKKPKF+
Sbjct:   21 VVDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFE 224

The following BLAST results are available for this feature:

BLAST of TCONS_00012884 vs. Swiss-Prot (Human)

BLAST of TCONS_00012884 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RS3A	3.350e-104	71.57	40S ribosomal protein S3a OS=Homo sapiens GN=RPS3A...	[more]

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TCONS_00012884 (transcript) - C. hemisphaerica