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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012813 ID=TCONS_00012813|Name=TCONS_00012813|organism=Clytia hemisphaerica|type=transcript|length=4410bpRun BLAST on NCBI protein sequence of TCONS_00012813-protein >TCONS_00012813-protein ID=TCONS_00012813-protein|Name=TCONS_00012813-protein|organism=Clytia hemisphaerica|type=polypeptide|length=763bp MLYTFGEDETGKLGLKENQLSNTRLPQAVEKAHGDGYIKVACGARHTVAIRun BLAST on NCBI transcript from alignment at sc0000156:101328..114746- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00012813 ID=TCONS_00012813|Name=TCONS_00012813|organism=Clytia hemisphaerica|type=transcript|length=13419bp|location=Sequence derived from alignment at sc0000156:101328..114746- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000156:101328..114746- >TCONS_00012813 ID=TCONS_00012813|Name=TCONS_00012813|organism=Clytia hemisphaerica|type=CDS|length=25212bp|location=Sequence derived from alignment at sc0000156:101328..114746- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00012813 vs. Swiss-Prot (Human)
Match: RPGR (X-linked retinitis pigmentosa GTPase regulator OS=Homo sapiens GN=RPGR PE=1 SV=2) HSP 1 Score: 213.772 bits (543), Expect = 2.193e-56 Identity = 104/210 (49.52%), Postives = 137/210 (65.24%), Query Frame = 3
Query: 114 GKAYTWGLNTEGQCGCGEEDEISIPTEIEWDQKIVSISCGYYHTAFVTGNGMLYTFGEDETGKLGLKENQLSNTRLPQAVEKAHGDGYIKVACGARHTVAITQKGKCFSWGDGSHGQLGHGTFVQEVATPKCIELLVDQKIVEISCGESHTAVVSESGKIFTFGDGRHGKLGQGDECFSNLFKPTLITRFKGFHVTQVSCGGCHMLVSAV 743
G+ + WG N+EGQ G + +P ++ + + ISCGYYH+AFVT +G LY FGE E GKLGL L N R PQ V + + I+VACG HTV +T+ +++G G GQLG GTF+ E + PK IE + DQ I ISCGE+HTA++++ G ++TFGDGRHGKLG G E F+N F PTL + F F V V+CGGCHM+V A
Sbjct: 159 GRLFMWGDNSEGQIGLKNVSNVCVPQQVTIGKPVSWISCGYYHSAFVTTDGELYVFGEPENGKLGLPNQLLGNHRTPQLVSEI-PEKVIQVACGGEHTVVLTENA-VYTFGLGQFGQLGLGTFLFETSEPKVIENIRDQTISYISCGENHTALITDIGLMYTFGDGRHGKLGLGLENFTNHFIPTLCSNFLRFIVKLVACGGCHMVVFAA 366 HSP 2 Score: 107.071 bits (266), Expect = 3.730e-23 Identity = 69/209 (33.01%), Postives = 110/209 (52.63%), Query Frame = 3
Query: 117 KAYTWGLNTEGQCGCGEEDEISIPTEIEW--DQKIVSISCGYYHTAFVTGNGMLYTFGEDETGKLGLKENQLSNTRLPQAVEKAHGDGYIK-VACGARHTVAITQKGKCFSWGDGSHGQLGHGTFVQEVATPKCIELLVDQKIVEISCGESHTAVVSESGKIFTFGDGRHGKLGQGDECFSNLFKPTLITRFKGFHVTQVSCGGCHMLV 734
K Y +G N GQ G G + IS PT ++ +K+ +CG HT T G +Y G + G+LGL + + NT + + IK ++ G+ + A+T+ G+ F WGD S GQ+G V V P+ ++ + + + ISCG H+A V+ G+++ FG+ +GKLG ++ N P L++ V QV+CGG H +V
Sbjct: 55 KLYMFGSNNWGQLGLGSKSAISKPTCVKALKPEKVKLAACGRNHTLVSTEGGNVYATGGNNEGQLGLGDTEERNTF--HVISFFTSEHKIKQLSAGSNTSAALTEDGRLFMWGDNSEGQIGLKN-VSNVCVPQ--QVTIGKPVSWISCGYYHSAFVTTDGELYVFGEPENGKLGLPNQLLGNHRTPQLVSEIPE-KVIQVACGGEHTVV 257 The following BLAST results are available for this feature:
BLAST of TCONS_00012813 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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