TCONS_00012813-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00012813-protein
Unique NameTCONS_00012813-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length763

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00012813-protein ID=TCONS_00012813-protein|Name=TCONS_00012813-protein|organism=Clytia hemisphaerica|type=polypeptide|length=763bp
MLYTFGEDETGKLGLKENQLSNTRLPQAVEKAHGDGYIKVACGARHTVAI
TQKGKCFSWGDGSHGQLGHGTFVQEVATPKCIELLVDQKIVEISCGESHT
AVVSESGKIFTFGDGRHGKLGQGDECFSNLFKPTLITRFKGFHVTQVSCG
GCHMLVSAVRRENADEDEGEDETDSLASSMVSRRSIQDANMTLKPGAMTF
PTVSKRDKRRMKDEEGGLNQSLNLNQSLNNSMNMAQLSKTVPQLPSSLDK
SRLPKIPGMSPRPNKEGQDMPPVPARRNLDNGAPIPAKRNLKPLNNEKSS
EPTNDVQMKQNKRLVAEISFSRNAPPPRKKVEPPKREDLNSNNEELVRKN
NQKNRKKDLSEEEDSEYDSVEENVNKHKKERTSKLKSLKQRKGKSFEDSE
EEESDENSSKQPSSKASVKNSKKSKSLDNESFDDDEDDDESEFEENSKAS
KNRNTKKNDKLPAIKKRPLPPSLKNDDVSDYESGEEESEESGEEEEMLLH
QKSKKKDDETKSQGKSVGKVKEIQVKKTTLKKVQEEDDDDDNDDDDDDDE
EEDEEDEEETEDEDEDDEDDEEEEDTKTKSKKKKVDEKSSKKKNNTKDGK
KKDKKKKTEEDDEEEDEEDEDEDEDEDEDEDEDLDEVDGKKNKRSKAKKD
KETTGKGKKNSKDKKKKKKNVDGEEEEEEEEEEEEEEEEEEEDEDEEKEK
PDEETKEEPKKGGFFGFFRRNKKKPEPVSDSKDKKSEKTDPDDKDKEGEE
PTNQSNSKACVIL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_007193XLOC_007193Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00012813TCONS_00012813Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000408Reg_chr_condens
IPR009091RCC1/BLIP-II
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 336..380
NoneNo IPR availableCOILSCoilCoilcoord: 661..700
NoneNo IPR availableGENE3D2.130.10.30coord: 1..164
e-value: 4.9E-47
score: 160.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 241..763
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 161..224
IPR000408Regulator of chromosome condensation, RCC1PRINTSPR00633RCCNDNSATIONcoord: 54..70
score: 28.43
coord: 2..18
score: 33.33
coord: 93..109
score: 22.55
coord: 109..123
score: 37.78
IPR000408Regulator of chromosome condensation, RCC1PFAMPF00415RCC1coord: 54..103
e-value: 7.8E-14
score: 51.9
coord: 2..50
e-value: 1.1E-8
score: 35.5
coord: 106..155
e-value: 3.6E-10
score: 40.2
IPR000408Regulator of chromosome condensation, RCC1PROSITEPS00626RCC1_2coord: 93..103
IPR000408Regulator of chromosome condensation, RCC1PROSITEPS00626RCC1_2coord: 40..50
IPR000408Regulator of chromosome condensation, RCC1PROSITEPS50012RCC1_3coord: 54..106
score: 16.655
IPR000408Regulator of chromosome condensation, RCC1PROSITEPS50012RCC1_3coord: 1..53
score: 14.102
IPR000408Regulator of chromosome condensation, RCC1PROSITEPS50012RCC1_3coord: 107..160
score: 13.378
IPR009091Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein IISUPERFAMILY50985RCC1/BLIP-IIcoord: 2..156

Blast
[Close]
BLAST of TCONS_00012813-protein vs. Swiss-Prot (Human)
Match: RPGR (X-linked retinitis pigmentosa GTPase regulator OS=Homo sapiens GN=RPGR PE=1 SV=2)

HSP 1 Score: 181.03 bits (458), Expect = 3.481e-47
Identity = 91/193 (47.15%), Postives = 120/193 (62.18%), Query Frame = 0 
Query:    2 LYTFGEDETGKLGLKENQLSNTRLPQAVEKAHGDGYIKVACGARHTVAITQKGKCFSWGDGSHGQLGHGTFVQEVATPKCIELLVDQKIVEISCGESHTAVVSESGKIFTFGDGRHGKLGQGDECFSNLFKPTLITRFKGFHVTQVSCGGCHMLVSAV-RRENADEDEGEDETDSLAS--SMVSRRSIQDANM 191
            LY FGE E GKLGL    L N R PQ V +   +  I+VACG  HTV +T+    +++G G  GQLG GTF+ E + PK IE + DQ I  ISCGE+HTA++++ G ++TFGDGRHGKLG G E F+N F PTL + F  F V  V+CGGCHM+V A   R  A E E ++  D+  S  + +   S+   N+
Sbjct:  211 LYVFGEPENGKLGLPNQLLGNHRTPQLVSEIP-EKVIQVACGGEHTVVLTENA-VYTFGLGQFGQLGLGTFLFETSEPKVIENIRDQTISYISCGENHTALITDIGLMYTFGDGRHGKLGLGLENFTNHFIPTLCSNFLRFIVKLVACGGCHMVVFAAPHRGVAKEIEFDEINDTCLSVATFLPYSSLTSGNV 401

HSP 2 Score: 86.6557 bits (213), Expect = 2.101e-17
Identity = 55/177 (31.07%), Postives = 90/177 (50.85%), Query Frame = 0 
Query:    2 LYTFGEDETGKLGLKENQLSNTRLPQAVEKAHGDGYIK-VACGARHTVAITQKGKCFSWGDGSHGQLGHGTFVQEVATPKCIELLVDQKIVEISCGESHTAVVSESGKIFTFGDGRHGKLGQGDECFSNLFKPTLITRFKGFHVTQVSCGGCHMLVSAVRRENADEDEGEDETDSLA 177
            +Y  G +  G+LGL + +  NT     +     +  IK ++ G+  + A+T+ G+ F WGD S GQ+G    V  V  P+  ++ + + +  ISCG  H+A V+  G+++ FG+  +GKLG  ++   N   P L++      V QV+CGG H   + V  ENA    G  +   L 
Sbjct:  108 VYATGGNNEGQLGLGDTEERNTF--HVISFFTSEHKIKQLSAGSNTSAALTEDGRLFMWGDNSEGQIGLKN-VSNVCVPQ--QVTIGKPVSWISCGYYHSAFVTTDGELYVFGEPENGKLGLPNQLLGNHRTPQLVSEIPE-KVIQVACGGEH---TVVLTENAVYTFGLGQFGQLG 275
The following BLAST results are available for this feature:
BLAST of TCONS_00012813-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RPGR3.481e-4747.15X-linked retinitis pigmentosa GTPase regulator OS=... [more]
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