TCONS_00012696 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012696
Unique NameTCONS_00012696
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1972

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012696 ID=TCONS_00012696|Name=TCONS_00012696|organism=Clytia hemisphaerica|type=transcript|length=1972bp
AAGTTAAGGCGAGAATCGCTTTTTAACGGTTGAAGGAGGACGACAACAAG
AAATTTGAATGATTCTTATTTCTAGACAATAAAATAGATCAAGaggcaag
aaaaaagtaaagtagCTCTTGCACTAGAGCGAAGTGTTATGTGTCGACAT
GTTGGTGTGGTAACGTGTCTTTTGGTGTGTATGCTCACACGAAGTCAAGG
ATGGCATTTATACGGTAATAGACAGTCAGACGAAAGGTTGAATTATCAAG
ACATACGAGATGAAAGGTTAAACCGACTGTACAACGATCTGGTAGAATAT
AAAAAACAAAGCAATGATTACCAACAAGTCAACCAACCAATCAACGACGA
GGATATGAATAAAGCGCTGAACAAGATTCCTGAAAATGATCAGTTATTTG
AAGGGGACATGGTTATGGACAACCGTTTGAGAGAAGCTGTCTTGGGAATC
TCAAAGAAATCAGTTGTCACTGGTGATGTTAAGTGGCCCAATCAAACTCT
GGTTTATGAAATCGATGCTAATTTTGTAAATGTGCCGCTTTTGAAGGAAG
GAATTCATGAATTTGAAACAAGGACATGTATCAGGTTTAAATTGAGGACA
AATGAACCAGACTATGTTTACTATACGTCAAAAGAAAATGTttgTTCATC
AAATATAGGGAAAGTTGGTGGCAAACAAGAGATTCACATTGGTAAAGATT
GTATGGTGCTGGGGACGATCATCCACGAGACAATGCATGCCCTGGGTTTT
ATACATGAACATTCTAGACCTGATCGTGATGAATACTTGAAAGTCAATTg
ggaaaatatcgaaaaagATGAATGGTCGAATTTCAACAAATATTCAGGAT
TTGAAGTTTCAGACGAAAACGTTGGTTACAACTTTGCGAGTCTGATGCAT
TATCGAAACGATGCGTTTACAATGAACGGCAAAGATACTTTAATAGCCAA
AGGTGACGAATCGTTAAAATTCGGTCAACGAATCAAATTCAGCGTTGGTG
ATGTTAGAGGAATCAATCGATTTTACCAATGTCATGCATATCTTGACACA
CCAAATTATAATGGTTTGTTTAAAGATTATTCTGGCGTGAAAGACGAACA
caaggaaaaggaaaaaagattggaaaatgttttgaataaatTCAGGGACC
GATTTTATGATCGGAAAATGAGACGTGGCTATTATTGATTGTTTTAATtg
gttatttttttatttttttttgggaaatacAGTGCGTCCGAAAATAATTT
ATATTAAGTAAGTAATATTTATCGGACAGTTgtgagtacaatatgagaaa
tattttgcgAGTTCGGAGATTTTTCCGTGTAATATTTAAGGAAATATAAG
GAatatccggaacgagtgaaatatttccatattgtacgagcaaatgtctg
ataactggtttatcggtgacccaaaaagcgcagggcacttttgaagaaaa
gtgacgttagattgctgctaccactataatgcaacaacatctattcgtca
atttatattttgtacatgtaaaatacaagatatattgtactctttttaac
caatcataTTGCAGATactttttggatcgccgataagcTATACGCTACCT
TACCAAGTCTTTAATTTGTTAAGACTTAAAATATTTGGATGGGTCACAGG
CAAGTTCtttaatttgttaaaaaataaagttaattTCCGAGTCACTCTTG
atgcaaagattttcaaaacataaataaaattagTTGAATTACTTATTGAA
GTACGACGATTCTCGTATCTAATTTCAGCATGACTTTTTTCTGAACCCAT
AAGACGTGTggaaaatatttcagttaaattatttATATGTTGAATAAACA
TCAAACCGGTCAGACCctaagattttaaattttatttgagGGCGCAAACT
TCGGtgtaaaaattttaattaatgaaAAGTTGcacatatatttttttgta
ccCGTTAACTTGGTTTTTAGAA
Run BLAST on NCBI

protein sequence of TCONS_00012696-protein

>TCONS_00012696-protein ID=TCONS_00012696-protein|Name=TCONS_00012696-protein|organism=Clytia hemisphaerica|type=polypeptide|length=349bp
MCRHVGVVTCLLVCMLTRSQGWHLYGNRQSDERLNYQDIRDERLNRLYND
LVEYKKQSNDYQQVNQPINDEDMNKALNKIPENDQLFEGDMVMDNRLREA
VLGISKKSVVTGDVKWPNQTLVYEIDANFVNVPLLKEGIHEFETRTCIRF
KLRTNEPDYVYYTSKENVCSSNIGKVGGKQEIHIGKDCMVLGTIIHETMH
ALGFIHEHSRPDRDEYLKVNWENIEKDEWSNFNKYSGFEVSDENVGYNFA
SLMHYRNDAFTMNGKDTLIAKGDESLKFGQRIKFSVGDVRGINRFYQCHA
YLDTPNYNGLFKDYSGVKDEHKEKEKRLENVLNKFRDRFYDRKMRRGYY
Run BLAST on NCBI

transcript from alignment at sc0000147:414021..420776+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012696 ID=TCONS_00012696|Name=TCONS_00012696|organism=Clytia hemisphaerica|type=transcript|length=6756bp|location=Sequence derived from alignment at sc0000147:414021..420776+ (Clytia hemisphaerica)
AAGTTAAGGCGAGAATCGCTTTTTAACGGTTGAAGGAGGACGACAACAAG
AAATTTGAATGATTCTTATTTCTAGACAATAAAATAGATCAAGaggcaag
aaaaaagtaaagtagCTCTTGCACTAGAGCGAAGTGTTATGTGTCGACAT
GTTGGTGTGGTAACGTGTCTTTTGGTGTGTATGCTCACACGAAGTCAAGG
ATGGCATTTATACGGTATGAAATTATATTTTACCTTTTAACAAGATTAAC
GATGAGTATTTGTTCACACAcctttttaatctcaaagtatcctTCAAAGA
AAAGTGTATTCAAGGCCTTGCTGCAGGTGTGGTTCCATAAGGTTAAACAG
ACTTGGTTGTATTTTGTTCTCAATTCATTCATAGATATCCCAAGCAAATT
TTATCCTATACACGGCAATCATAAAGAGTGAATTACAATTACATTCCAAT
CAAAACAGCAATACTTTGTATAAGTCGTGTGGGAGCCTTTGATGCGTAGC
CGTTAAAAAGATTTCCTACACATGCTAAATCTTTACAATACCTTCAAACA
AAACTGTGGGTAGTTTTgaagtgacgaaaaaaaagcTTGTACATTTCTCT
ATAGTCCAACGTTgtctttttacattttttatcttAGCTAAGTATAATCG
AAAGTAGACgaccttttttccgatgtgttctaaGAGCctatttcagctag
aaattttgatctgttctgatcagaatttcgaaaattaatcagctagaaat
gggctttttccagaaatagttcGTGCCCCCATGTtaaggatatcggatat
ccaagggttaacgatttttgttcaaaagtggatatctaGGGGCTTAAATA
TCTATAAGGGAGCggatgtccagggggtaaagtgtcttttcaagtaaaaa
atactttactaataaagtaggatatccagggggtttgatatttcgaaaaa
tcaatatcctcaacagtggagGTAAAtctttttctagaaaagcccaaaaa
tgatgtgttctgacgagacaggggtatactCAAGTTCATCAAACGtcttc
ttgttgtctaggtaacccttgatattttcagaacacatcttacGTTGAGA
AAAAATATCTTACCAGTTTATCTTGGCAAACTGTTTTCCTAGATTTcaga
acacatcaaaccataaagtagtgataagtttagggagacaaatagtgcga
taaaggtttcttagaaatcagaacacatcatttgtttaaaaaattgaaag
gtcataacatttggtctcctagaagataagaacacgtatttcttaaaaaa
atctcttcgccggctgcttctgtatAGTAGTAGAGGTAGTAGCAAAGGAT
TTGAAAAAACTGTATcgtggaaaatttgaaaagttcattttaAATTCCAG
GCTCGATTGATGGAATAATCGATTTTCTTTTGTAGTATAAGGGTTAAGCT
AGACAAATTGTTTCTAAAGATATGCCATAAAAATAAATGTTCGAATAAAA
TTAATAGTTAAAACTGGAAATTACAATTCACAGTCTAAAATTGTGTAAAC
TTTCGTGACATCGGAATAATAAATTAAAGAAGTCAAAAAAGTTCTCAGAT
GAATAAATCATAAAAGAGGAAAAACcttgaaatagaaaaattagtcCTAA
AAAGGAACTCCCATTAGCACGTCAAGAATATCACACGTCAGAGACTTACG
GAACAAGCCTAGACTTATTTTCTTGAGTTTTGTGAGATTTATTGGGAACC
ATCaatgaacaaaaaagaaaatattaacgGTTGATGATAGTAGAACAATT
TGATAAGAACAATATTCTCAAAATCGCTTGGAATATAAACGGTTTGAAGC
TCAAAAAGAAGACAAGCCTATCCTCAACAAAATTTtactgaataaaaaaa
aagagtgtattttcACTGGAATCAGCTCCATcacaaattatcaaaaagca
aagttcagcaaGAAGTCGACTCTTAGTTTAttatgaatacacgttttttt
ataagaacaaactacataaaaacataaggcttcgctgaaagaacatttta
aggctttgtggactcaaaaacaccttatttcttaggaaaatggtcaaaaa
atattcacaaaatggtcacaataagaacatgttaagaacacttttaggct
tgaaactcaaaaggTTCATCAAGTTcccatccgaaggcttaaaaaatttt
ggatgatcttataaaaaaacgtttacgGGTGATGACACCCCTGCCTTTCT
TGGAACagtatttctttgaaaaaaaaaagagaaaaaaatctttcccatAA
AATAATTATCTGTTCTTCTAAAGAGAAAAGTTCccgaaaaaacaaaacaa
aaaacacatgAGGTCGCTTTCGGGTCGCTTTCTTATCTTACCAAAAAATC
TGACCAACACAAATGACATCTAGGAAGAAAATGAAACGaaggaaaattag
tttcctTTCATCTAATTTTTCTTCGAATAGAAAATATCTACAACCATCAA
GATTTctcttaaaagtttttaatttaaaaagtaTGTCCTCAAGATCTTTA
TTGTGTTGAACGATGAAAAAGAATTCTTCAGgatcattttattttcactC
TATAGTTTCCTGGGCGGTTAAAAACCCCCTATATGTAATCAACCCCCCCT
AAAGGCCCCCATATTTATAAATTTCTCAGACCCGCCTTAATAACCGAGGT
CGTGAACCCTGGAATAAAATGTTTGACTGAGAATGATACTGAACATGATA
AATTCAtttggtaaaaattttgaactcccccTCTATATAACTATAGGGGT
ATGGCCAAACCCCACCTAATAATTGAGACTTTTCAACCCCCCCTTACAGG
GTTGTCTGAGAATTCGAACCCTCCTCCCCCATAAACAAACTATTCACTCT
AAATATCAATCAGTGAATCCAAacattttaaaagcaaaaagcaTTGAAGT
TCTTGAAGTTTTCCCGGGTCCTAGTTctactaaatatttttttgtagaaa
CCAAAAGCCTTTGAGAAGTCCCTCAAAAATCATAACACCCTGCTATGTTT
GACATACTAAAATTTTCCTCATTTTGTAGGTAATAGACAGTCAGACGAAA
GGTTGAATTATCAAGACATACGAGATGAAAGGTTAAACCGACTGTACAAC
GATCTGGTAGAATATAAAAAACAAAGCAATGATTACCAACAAGTCAACCA
ACCAATCAACGACGAGGATATGAATAAAGCGCTGAACAAGATTCCTGAAA
ATGATCAGTTATTTGAAGGGGACATGGTTATGGACAACCGTTTGAGAGAA
GCTGTCTTGGGAATCTCAAAGAAATCAGTTGTCACTGGTGATGTTAAGTG
GCCCAATCAAACTCTGGTTTATGAAATCGATGCTAATTTTGTAAATGGTA
AGTTGACTCTTGGTTGCTACTGAACATTTTTTGGACGTCATATAGATGTA
TCTTTATGTACCGGTTGACTTGATTCCTACCGTAGCATTGACCATTAAGT
TCTTAGGCTAAAGTTCTTTCACTTTTAAATATACCTTGTGTTCCATTGGA
TCTTATTGTATAGAATTATTGTATTTGAAGAGCAGTTTTCTATGGGACGC
TCTGTAGATTCGAAACGAAATTTCTTTTTCCCGCTGGAAAGATAATCGTG
AGTGGGATAATTAtcgaacaaaatatttttgagaaattcaagcAAATAAA
GAAGAATGAAAGTCAAAAAAGGGTAAAAGTCTAAAAGGGTAAAACAATTC
TCTTTGACTCCAAAACAAACCGTCCAATTACTTTACTTTAACTAATATAT
TTTTACCGTTTAGTGCCGCTTTTGAAGGAAGGAATTCATGAATTTGAAAC
AAGGACATGTATCAGGTTTAAATTGAGGACAAATGAACCAGACTATGTTT
ACTATACGTCAAAAGAAAATGTGTAAGTTCAAATATTGTTGTCATGAGAG
AAAAATCTTCTTGGTCATTGTTTCGAGTcagaaaattatcatttcatgTT
GACTTGAATGATTTTTTGGTTTCCCTTTAGTCTATTTGAAAGATTATAGT
TTTTGATATGGAAAATAACCCTTTAAAAAAGATAATATTTGGACACTATC
AGTGTATGTCCAATAAGTTCGATAAGACCAAAAATTGGTCCTCAGTCacg
ttttatatttttctttcagttgTTCATCAAATATAGGGAAAGTTGGTGGC
AAACAAGAGATTCACATTGGTAAAGATTGTATGGTGCTGGGGACGATCAT
CCACGAGACAATGCATGCCCTGGGTTTTATACATGAACATTCTAGACCTG
ATCGTGATGAATACTTGAAAGTCAATTgggaaaatatcgaaaaaggtttt
ttttttattaattcttGCATTCTTGAATCTCATAGATTATAGTTGAGCTT
TTCACGTACAAATTGTCCCAAATAAAGCGTACGTTTTTTTGCCTNTGCTC
TGTTTTGGGGTAACTTTGCTCtttttgagggtaattttgaatttctAGGG
GATAAACTAATGTTTGTCTGGGGTAGACGGTTAGACCTGCtgcccgaggg
gggggggtcaaaagtcactttgtccggggggtaaatcattgaaaattgtt
atatcctccacccccaatatgcaatttttttctggaagagcccaattcaT
CTGTCAAATTTAACACTTAAtatttcaaactcaaaaaactataCGCCATA
ATTATTGTAACTCGAATTTGTACGAGTCTCAAGTTCATTTCGAATATAAT
TGGTAAACcgtgaaaattattatttttcttttgatattgtaaGTAATTAA
CGTGCAAGAGCAATTAACGCAAAGGAGGATGGGATCTCaagtgaattttc
aaatttgttaGTCTTTTTGGACTCGCCGCGGTACGCTATTGAATGTCTAT
TGATTGAATAAAGATTgtaatcttatttcaattattctaagCATAGTTTA
AGTAatgaattttgaagattttactttgaataaaaatatgtccgtttttt
ttgggacacactgtatgaTTGTATGATGGTTTTTCAAAATCgcttgaaaa
tgatattttatgttATGCCCACGGGTTATCATTACATTCTGtttattcca
atattttttgaattattagATGAATGGTCGAATTTCAACAAATATTCAGG
ATTTGAAGTTTCAGACGAAAACGTTGGTTACAACTTTGCGGTAATTttgt
tctatctattcataaaattaaaaacaatgcAATTTGAAACTCCATGTTGT
TAAACGCGAATACAGCATGTGTGCATGGGCCCCCGTCAACACTTTTTTGC
AGACCATAccatactttttttaaaagttactattttaagccataaaaact
attattctccacAGTTAGATaacgttttaaggtgttttgagggtgtaaaa
agtgaaaaactttctTCGACTACagtatttttccaaaatattgtcccccc
CACTCAAAATGGCTTGCCGGGGCCCATGGTGTGTCATAATTCTGTTAGCC
GCCTACAGTGTGCCCGAAAAAAATAAGGGttgtatttcaaaatcatttct
tACTTATTACTTCGATATCCGATATCCGATTTTCTTTAGGCTGGAAGAAA
TATATAAATACTGGATAGGCATCTTCGATTATTAAAACAGAAatattatc
aatatttttattattcttGTAGAGTCTGATGCATTATCGAAACGATGCGT
TTACAATGAACGGCAAAGATACTTTAATAGCCAAAGGTGACGAATCGTTA
AAATTCGGTCAACGAATCAAATTCAGCGTTGGTGATGTTAGAGGAATCAA
TCGATTTTACCAATGTCATGCATATCTTGACACACCAAATTATAATGGTT
TGTTTAAAGATTATTCTGGCGTGAAAGACGAACAcaaggaaaaggaaaaa
agattggaaaatgttttgaataaatTCAGGGACCGATTTTATGATCGGAA
AATGAGACGTGGCTATTATTGATTGTTTTAATtggttatttttttatttt
tttttgggaaatacAGTGCGTCCGAAAATAATTTATATTAAGTAAGTAAT
ATTTATCGGACAGTTgtgagtacaatatgagaaatattttgcgAGTTCGG
AGATTTTTCCGTGTAATATTTAAGGAAATATAAGGAatatccggaacgag
tgaaatatttccatattgtacgagcaaatgtctgataactggtttatcgg
tgacccaaaaagcgcagggcacttttgaagaaaagtgacgttagattgct
gctaccactataatgcaacaacatctattcgtcaatttatattttgtaca
tgtaaaatacaagatatattgtactctttttaaccaatcataTTGCAGAT
actttttggatcgccgataagcTATACGCTACCTTACCAAGTCTTTAATT
TGTTAAGACTTAAAATATTTGGATGGGTCACAGGCAAGTTCtttaatttg
ttaaaaaataaagttaattTCCGAGTCACTCTTGatgcaaagattttcaa
aacataaataaaattagTTGAATTACTTATTGAAGTACGACGATTCTCGT
ATCTAATTTCAGCATGACTTTTTTCTGAACCCATAAGACGTGTggaaaat
atttcagttaaattatttATATGTTGAATAAACATCAAACCGGTCAGACC
ctaagattttaaattttatttgagGGCGCAAACTTCGGtgtaaaaatttt
aattaatgaaAAGTTGcacatatatttttttgtaccCGTTAACTTGGTTT
TTAGAA

Coding sequence (CDS) from alignment at sc0000147:414021..420776+

>TCONS_00012696 ID=TCONS_00012696|Name=TCONS_00012696|organism=Clytia hemisphaerica|type=CDS|length=6300bp|location=Sequence derived from alignment at sc0000147:414021..420776+ (Clytia hemisphaerica)
ATGTGTCGACATGTTGGTGTGGTAACGTGTCTTTTGGTGTGTATGCTCAC
ACGAAGTCAAGGATGGCATTTATACGGTAATAGACAGTCAGACGAAAGGT
TGAATTATCAAGACATACGAGATGAAAGGTTAAACCGACTGTACAACGAT
CTGGTAGAATATAAAAAACAAAGCAATGATTACCAACAAGTCAACCAACC
AATCAACGACGAGGATATGAATAAAGCGCTGAACAAGATTCCTGAAAATG
ATCAGTTATTTGAAGGGGACATGGTTATGGACAACCGTTTGAGAGAAGCT
GTCTTGGGAATCTCAAAGAAATCAGTTGTCACTGGTGATGTTAAGTGGCC
CAATCAAACTCTGGTTTATGAAATCGATGCTAATTTTGTAAATGTGCCGC
TTTTGAAGGAAGGAATTCATGAATTTGAAACAAGGACATGTATCAGGTTT
AAATTGAGGACAAATGAACCAGACTATGTTTACTATACGTCAAAAGAAAA
TGTttgTTCATCAAATATAGGGAAAGTTGGTGGCAAACAAGAGATTCACA
TTGGTAAAGATTGTATGGTGCTGGGGACGATCATCCACGAGACAATGCAT
GCCCTGGGTTTTATACATGAACATTCTAGACCTGATCGTGATGAATACTT
GAAAGTCAATTgggaaaatatcgaaaaagATGAATGGTCGAATTTCAACA
AATATTCAGGATTTGAAGTTTCAGACGAAAACGTTGGTTACAACTTTGCG
AGTCTGATGCATTATCGAAACGATGCGTTTACAATGAACGGCAAAGATAC
TTTAATAGCCAAAGGTGACGAATCGTTAAAATTCGGTCAACGAATCAAAT
TCAGCGTTGGTGATGTTAGAGGAATCAATCGATTTTACCAATGTCATGCA
TATCTTGACACACCAAATTATAATGGTTTGTTTAAAGATTATTCTGGCGT
GAAAGACGAACAcaaggaaaaggaaaaaagattggaaaatgttttgaata
aatTCAGGGACCGATTTTATGATCGGAAAATGAGACGTGGCTATTATTGA
ATGTGTCGACATGTTGGTGTGGTAACGTGTCTTTTGGTGTGTATGCTCAC
ACGAAGTCAAGGATGGCATTTATACGGTAATAGACAGTCAGACGAAAGGT
TGAATTATCAAGACATACGAGATGAAAGGTTAAACCGACTGTACAACGAT
CTGGTAGAATATAAAAAACAAAGCAATGATTACCAACAAGTCAACCAACC
AATCAACGACGAGGATATGAATAAAGCGCTGAACAAGATTCCTGAAAATG
ATCAGTTATTTGAAGGGGACATGGTTATGGACAACCGTTTGAGAGAAGCT
GTCTTGGGAATCTCAAAGAAATCAGTTGTCACTGGTGATGTTAAGTGGCC
CAATCAAACTCTGGTTTATGAAATCGATGCTAATTTTGTAAATGTGCCGC
TTTTGAAGGAAGGAATTCATGAATTTGAAACAAGGACATGTATCAGGTTT
AAATTGAGGACAAATGAACCAGACTATGTTTACTATACGTCAAAAGAAAA
TGTttgTTCATCAAATATAGGGAAAGTTGGTGGCAAACAAGAGATTCACA
TTGGTAAAGATTGTATGGTGCTGGGGACGATCATCCACGAGACAATGCAT
GCCCTGGGTTTTATACATGAACATTCTAGACCTGATCGTGATGAATACTT
GAAAGTCAATTgggaaaatatcgaaaaagATGAATGGTCGAATTTCAACA
AATATTCAGGATTTGAAGTTTCAGACGAAAACGTTGGTTACAACTTTGCG
AGTCTGATGCATTATCGAAACGATGCGTTTACAATGAACGGCAAAGATAC
TTTAATAGCCAAAGGTGACGAATCGTTAAAATTCGGTCAACGAATCAAAT
TCAGCGTTGGTGATGTTAGAGGAATCAATCGATTTTACCAATGTCATGCA
TATCTTGACACACCAAATTATAATGGTTTGTTTAAAGATTATTCTGGCGT
GAAAGACGAACAcaaggaaaaggaaaaaagattggaaaatgttttgaata
aatTCAGGGACCGATTTTATGATCGGAAAATGAGACGTGGCTATTATTGA
ATGTGTCGACATGTTGGTGTGGTAACGTGTCTTTTGGTGTGTATGCTCAC
ACGAAGTCAAGGATGGCATTTATACGGTAATAGACAGTCAGACGAAAGGT
TGAATTATCAAGACATACGAGATGAAAGGTTAAACCGACTGTACAACGAT
CTGGTAGAATATAAAAAACAAAGCAATGATTACCAACAAGTCAACCAACC
AATCAACGACGAGGATATGAATAAAGCGCTGAACAAGATTCCTGAAAATG
ATCAGTTATTTGAAGGGGACATGGTTATGGACAACCGTTTGAGAGAAGCT
GTCTTGGGAATCTCAAAGAAATCAGTTGTCACTGGTGATGTTAAGTGGCC
CAATCAAACTCTGGTTTATGAAATCGATGCTAATTTTGTAAATGTGCCGC
TTTTGAAGGAAGGAATTCATGAATTTGAAACAAGGACATGTATCAGGTTT
AAATTGAGGACAAATGAACCAGACTATGTTTACTATACGTCAAAAGAAAA
TGTttgTTCATCAAATATAGGGAAAGTTGGTGGCAAACAAGAGATTCACA
TTGGTAAAGATTGTATGGTGCTGGGGACGATCATCCACGAGACAATGCAT
GCCCTGGGTTTTATACATGAACATTCTAGACCTGATCGTGATGAATACTT
GAAAGTCAATTgggaaaatatcgaaaaagATGAATGGTCGAATTTCAACA
AATATTCAGGATTTGAAGTTTCAGACGAAAACGTTGGTTACAACTTTGCG
AGTCTGATGCATTATCGAAACGATGCGTTTACAATGAACGGCAAAGATAC
TTTAATAGCCAAAGGTGACGAATCGTTAAAATTCGGTCAACGAATCAAAT
TCAGCGTTGGTGATGTTAGAGGAATCAATCGATTTTACCAATGTCATGCA
TATCTTGACACACCAAATTATAATGGTTTGTTTAAAGATTATTCTGGCGT
GAAAGACGAACAcaaggaaaaggaaaaaagattggaaaatgttttgaata
aatTCAGGGACCGATTTTATGATCGGAAAATGAGACGTGGCTATTATTGA
ATGTGTCGACATGTTGGTGTGGTAACGTGTCTTTTGGTGTGTATGCTCAC
ACGAAGTCAAGGATGGCATTTATACGGTAATAGACAGTCAGACGAAAGGT
TGAATTATCAAGACATACGAGATGAAAGGTTAAACCGACTGTACAACGAT
CTGGTAGAATATAAAAAACAAAGCAATGATTACCAACAAGTCAACCAACC
AATCAACGACGAGGATATGAATAAAGCGCTGAACAAGATTCCTGAAAATG
ATCAGTTATTTGAAGGGGACATGGTTATGGACAACCGTTTGAGAGAAGCT
GTCTTGGGAATCTCAAAGAAATCAGTTGTCACTGGTGATGTTAAGTGGCC
CAATCAAACTCTGGTTTATGAAATCGATGCTAATTTTGTAAATGTGCCGC
TTTTGAAGGAAGGAATTCATGAATTTGAAACAAGGACATGTATCAGGTTT
AAATTGAGGACAAATGAACCAGACTATGTTTACTATACGTCAAAAGAAAA
TGTttgTTCATCAAATATAGGGAAAGTTGGTGGCAAACAAGAGATTCACA
TTGGTAAAGATTGTATGGTGCTGGGGACGATCATCCACGAGACAATGCAT
GCCCTGGGTTTTATACATGAACATTCTAGACCTGATCGTGATGAATACTT
GAAAGTCAATTgggaaaatatcgaaaaagATGAATGGTCGAATTTCAACA
AATATTCAGGATTTGAAGTTTCAGACGAAAACGTTGGTTACAACTTTGCG
AGTCTGATGCATTATCGAAACGATGCGTTTACAATGAACGGCAAAGATAC
TTTAATAGCCAAAGGTGACGAATCGTTAAAATTCGGTCAACGAATCAAAT
TCAGCGTTGGTGATGTTAGAGGAATCAATCGATTTTACCAATGTCATGCA
TATCTTGACACACCAAATTATAATGGTTTGTTTAAAGATTATTCTGGCGT
GAAAGACGAACAcaaggaaaaggaaaaaagattggaaaatgttttgaata
aatTCAGGGACCGATTTTATGATCGGAAAATGAGACGTGGCTATTATTGA
ATGTGTCGACATGTTGGTGTGGTAACGTGTCTTTTGGTGTGTATGCTCAC
ACGAAGTCAAGGATGGCATTTATACGGTAATAGACAGTCAGACGAAAGGT
TGAATTATCAAGACATACGAGATGAAAGGTTAAACCGACTGTACAACGAT
CTGGTAGAATATAAAAAACAAAGCAATGATTACCAACAAGTCAACCAACC
AATCAACGACGAGGATATGAATAAAGCGCTGAACAAGATTCCTGAAAATG
ATCAGTTATTTGAAGGGGACATGGTTATGGACAACCGTTTGAGAGAAGCT
GTCTTGGGAATCTCAAAGAAATCAGTTGTCACTGGTGATGTTAAGTGGCC
CAATCAAACTCTGGTTTATGAAATCGATGCTAATTTTGTAAATGTGCCGC
TTTTGAAGGAAGGAATTCATGAATTTGAAACAAGGACATGTATCAGGTTT
AAATTGAGGACAAATGAACCAGACTATGTTTACTATACGTCAAAAGAAAA
TGTttgTTCATCAAATATAGGGAAAGTTGGTGGCAAACAAGAGATTCACA
TTGGTAAAGATTGTATGGTGCTGGGGACGATCATCCACGAGACAATGCAT
GCCCTGGGTTTTATACATGAACATTCTAGACCTGATCGTGATGAATACTT
GAAAGTCAATTgggaaaatatcgaaaaagATGAATGGTCGAATTTCAACA
AATATTCAGGATTTGAAGTTTCAGACGAAAACGTTGGTTACAACTTTGCG
AGTCTGATGCATTATCGAAACGATGCGTTTACAATGAACGGCAAAGATAC
TTTAATAGCCAAAGGTGACGAATCGTTAAAATTCGGTCAACGAATCAAAT
TCAGCGTTGGTGATGTTAGAGGAATCAATCGATTTTACCAATGTCATGCA
TATCTTGACACACCAAATTATAATGGTTTGTTTAAAGATTATTCTGGCGT
GAAAGACGAACAcaaggaaaaggaaaaaagattggaaaatgttttgaata
aatTCAGGGACCGATTTTATGATCGGAAAATGAGACGTGGCTATTATTGA
ATGTGTCGACATGTTGGTGTGGTAACGTGTCTTTTGGTGTGTATGCTCAC
ACGAAGTCAAGGATGGCATTTATACGGTAATAGACAGTCAGACGAAAGGT
TGAATTATCAAGACATACGAGATGAAAGGTTAAACCGACTGTACAACGAT
CTGGTAGAATATAAAAAACAAAGCAATGATTACCAACAAGTCAACCAACC
AATCAACGACGAGGATATGAATAAAGCGCTGAACAAGATTCCTGAAAATG
ATCAGTTATTTGAAGGGGACATGGTTATGGACAACCGTTTGAGAGAAGCT
GTCTTGGGAATCTCAAAGAAATCAGTTGTCACTGGTGATGTTAAGTGGCC
CAATCAAACTCTGGTTTATGAAATCGATGCTAATTTTGTAAATGTGCCGC
TTTTGAAGGAAGGAATTCATGAATTTGAAACAAGGACATGTATCAGGTTT
AAATTGAGGACAAATGAACCAGACTATGTTTACTATACGTCAAAAGAAAA
TGTttgTTCATCAAATATAGGGAAAGTTGGTGGCAAACAAGAGATTCACA
TTGGTAAAGATTGTATGGTGCTGGGGACGATCATCCACGAGACAATGCAT
GCCCTGGGTTTTATACATGAACATTCTAGACCTGATCGTGATGAATACTT
GAAAGTCAATTgggaaaatatcgaaaaagATGAATGGTCGAATTTCAACA
AATATTCAGGATTTGAAGTTTCAGACGAAAACGTTGGTTACAACTTTGCG
AGTCTGATGCATTATCGAAACGATGCGTTTACAATGAACGGCAAAGATAC
TTTAATAGCCAAAGGTGACGAATCGTTAAAATTCGGTCAACGAATCAAAT
TCAGCGTTGGTGATGTTAGAGGAATCAATCGATTTTACCAATGTCATGCA
TATCTTGACACACCAAATTATAATGGTTTGTTTAAAGATTATTCTGGCGT
GAAAGACGAACAcaaggaaaaggaaaaaagattggaaaatgttttgaata
aatTCAGGGACCGATTTTATGATCGGAAAATGAGACGTGGCTATTATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007131XLOC_007131Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012696-proteinTCONS_00012696-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012696-exon-sc0000147-1491911889:414021..414234TCONS_00012696-exon-sc0000147-1491911889:414021..414234Clytia hemisphaericaexon
TCONS_00012696-exon-sc0000147-1510915933:414021..414234TCONS_00012696-exon-sc0000147-1510915933:414021..414234Clytia hemisphaericaexon
TCONS_00012696-exon-sc0000147-1575043694:414021..414234TCONS_00012696-exon-sc0000147-1575043694:414021..414234Clytia hemisphaericaexon
TCONS_00012696-exon-sc0000147-1491911889:417100..417417TCONS_00012696-exon-sc0000147-1491911889:417100..417417Clytia hemisphaericaexon
TCONS_00012696-exon-sc0000147-1510915933:417100..417417TCONS_00012696-exon-sc0000147-1510915933:417100..417417Clytia hemisphaericaexon
TCONS_00012696-exon-sc0000147-1575043694:417100..417417TCONS_00012696-exon-sc0000147-1575043694:417100..417417Clytia hemisphaericaexon
TCONS_00012696-exon-sc0000147-1491911889:417834..417942TCONS_00012696-exon-sc0000147-1491911889:417834..417942Clytia hemisphaericaexon
TCONS_00012696-exon-sc0000147-1510915933:417834..417942TCONS_00012696-exon-sc0000147-1510915933:417834..417942Clytia hemisphaericaexon
TCONS_00012696-exon-sc0000147-1575043694:417834..417942TCONS_00012696-exon-sc0000147-1575043694:417834..417942Clytia hemisphaericaexon
TCONS_00012696-exon-sc0000147-1491911889:418190..418365TCONS_00012696-exon-sc0000147-1491911889:418190..418365Clytia hemisphaericaexon
TCONS_00012696-exon-sc0000147-1510915933:418190..418365TCONS_00012696-exon-sc0000147-1510915933:418190..418365Clytia hemisphaericaexon
TCONS_00012696-exon-sc0000147-1575043694:418190..418365TCONS_00012696-exon-sc0000147-1575043694:418190..418365Clytia hemisphaericaexon
TCONS_00012696-exon-sc0000147-1491911889:419140..419210TCONS_00012696-exon-sc0000147-1491911889:419140..419210Clytia hemisphaericaexon
TCONS_00012696-exon-sc0000147-1510915933:419140..419210TCONS_00012696-exon-sc0000147-1510915933:419140..419210Clytia hemisphaericaexon
TCONS_00012696-exon-sc0000147-1575043694:419140..419210TCONS_00012696-exon-sc0000147-1575043694:419140..419210Clytia hemisphaericaexon
TCONS_00012696-exon-sc0000147-1491911889:419693..420776TCONS_00012696-exon-sc0000147-1491911889:419693..420776Clytia hemisphaericaexon
TCONS_00012696-exon-sc0000147-1510915933:419693..420776TCONS_00012696-exon-sc0000147-1510915933:419693..420776Clytia hemisphaericaexon
TCONS_00012696-exon-sc0000147-1575043694:419693..420776TCONS_00012696-exon-sc0000147-1575043694:419693..420776Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000147supercontigsc0000147:414021..420776 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
149.618	137.523	91.3859	83.8288	172.558	129.813	150.134	145.096	84.6806	88.2973	55.4908	62.2163	33.1063	31.0568	10.577	9.864	28.9869	30.5832	37.3846	57.3554	56.2824	51.6816	78.8493	78.4099	28.9265	28.4933	43.9343	32.2257	28.0346	34.5235
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001506Peptidase_M12A
IPR006026Peptidase_Metallo
IPR024079MetalloPept_cat_dom
IPR034035Astacin-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004222metalloendopeptidase activity
GO:0008237metallopeptidase activity
GO:0008270zinc ion binding
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0004222 metalloendopeptidase activity
molecular_function GO:0008237 metallopeptidase activity
molecular_function GO:0008270 zinc ion binding
Blast
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BLAST of TCONS_00012696 vs. Swiss-Prot (Human)
Match: TLL2 (Tolloid-like protein 2 OS=Homo sapiens GN=TLL2 PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.578e-30
Identity = 68/196 (34.69%), Postives = 107/196 (54.59%), Query Frame = 1 
Query:  484 WPNQTLVYEIDANFVNV--PLLKEGIHEFETRTCIRFKLRTNEPDYVYYTSKENVCSSNIGK-VGGKQEIHIGKDCMVLGTIIHETMHALGFIHEHSRPDRDEYLKVNWENIEKDEWSNFNKYSGFEVSDENVGYNFASLMHYRNDAFTMNG-KDTLIAKGDES---LKFGQRIKFSVGDVRGINRFYQCHAYLDT 1050
            WP   + Y I  NF      + K+ +  +E  TC+ F  RT+E  ++ ++ +   C S +G+  GG Q I IGK+C   G + HE  H +GF HEH+RPDRD+++ +  ENI+  +  NF K    EVS     Y+F S+MHY  + F+     DT++ + D++      GQR++ S GD+    + Y+C A  +T
Sbjct:  159 WPGGVIPYVIGGNFTGSQRAIFKQAMRHWEKHTCVTFIERTDEESFIVFSYRTCGCCSYVGRRGGGPQAISIGKNCDKFGIVAHELGHVVGFWHEHTRPDRDQHVTIIRENIQPGQEYNFLKMEAGEVSSLGETYDFDSIMHYARNTFSRGVFLDTILPRQDDNGVRPTIGQRVRLSQGDIAQARKLYKCPACGET 354
The following BLAST results are available for this feature:
BLAST of TCONS_00012696 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TLL21.578e-3034.69Tolloid-like protein 2 OS=Homo sapiens GN=TLL2 PE=... [more]
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