TCONS_00012676 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012676
Unique NameTCONS_00012676
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length782

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012676 ID=TCONS_00012676|Name=TCONS_00012676|organism=Clytia hemisphaerica|type=transcript|length=782bp
tattatttatttatatgaCATGTCAATGGATATATTTGAGGTAATCAAGT
GCGATGTTATAtgatacaaaaataatgaagaatATACAAAATTTTCTTAA
GATGTTTCTTAGGGGACAAAGCTGCCATAGAGCCCATCAGCTTGTGGATC
CAAGGTGTACCAGAATCCCAAATGTTGTCTGGTCATCTCATCAACATCAA
GTTTGCCACTGTTGTCCAAATCGCAATGTTTGAAGGTCTCCTCGGCGTCT
GCGTCTGATGCACAGATTCCAGACACTCTTCCATAGGCTTTCCATTCGTC
CAAACTGATTGTACCGCTTCCATCTTTATCGAAAATGTCGAAAACAACAT
CTCCCCATCGGCGAATTAAGGTGGTCTTGTTTTGGGACCACAATTTCAAA
TCGTTGGTAGCAAGTCGTTTCCATCCTTCAAGGAATTCTGGGAATTCCAC
TTCTTTGCCATAATCCATACCAATGGCTTTGAAGAAAGCTTCAACAGCAT
CTTGATGGCGCTGTGTTTGTTCTGGTGATGCGTTCAATTTGGCGCAAATG
TCATCTGAAGCTTTGGAGACAATTTCATCCAAAGTGATTTTTCCGTTACC
GTTGATGTCCAAAAAGTTGAACATGAATCTATGACGGTTGATCCATTTTG
GATTATTAAAATCAGGTTTAAGCTTGACGGCGTATTTGGATCCAGTTTCT
TGATGAGCCATAGTTGTTGGAAGATTGTCTTTGAAGaacttcaaaacaaa
tttgatcTTCTAGCTTTCACAGTAAGTCGTTT
Run BLAST on NCBI

protein sequence of TCONS_00012676-protein

>TCONS_00012676-protein ID=TCONS_00012676-protein|Name=TCONS_00012676-protein|organism=Clytia hemisphaerica|type=polypeptide|length=200bp
MAHQETGSKYAVKLKPDFNNPKWINRHRFMFNFLDINGNGKITLDEIVSK
ASDDICAKLNASPEQTQRHQDAVEAFFKAIGMDYGKEVEFPEFLEGWKRL
ATNDLKLWSQNKTTLIRRWGDVVFDIFDKDGSGTISLDEWKAYGRVSGIC
ASDADAEETFKHCDLDNSGKLDVDEMTRQHLGFWYTLDPQADGLYGSFVP
Run BLAST on NCBI

transcript from alignment at sc0000146:512354..513135

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012676 ID=TCONS_00012676|Name=TCONS_00012676|organism=Clytia hemisphaerica|type=transcript|length=782bp|location=Sequence derived from alignment at sc0000146:512354..513135 (Clytia hemisphaerica)
AAACGACTTACTGTGAAAGCTAGAAgatcaaatttgttttgaagttCTTC
AAAGACAATCTTCCAACAACTATGGCTCATCAAGAAACTGGATCCAAATA
CGCCGTCAAGCTTAAACCTGATTTTAATAATCCAAAATGGATCAACCGTC
ATAGATTCATGTTCAACTTTTTGGACATCAACGGTAACGGAAAAATCACT
TTGGATGAAATTGTCTCCAAAGCTTCAGATGACATTTGCGCCAAATTGAA
CGCATCACCAGAACAAACACAGCGCCATCAAGATGCTGTTGAAGCTTTCT
TCAAAGCCATTGGTATGGATTATGGCAAAGAAGTGGAATTCCCAGAATTC
CTTGAAGGATGGAAACGACTTGCTACCAACGATTTGAAATTGTGGTCCCA
AAACAAGACCACCTTAATTCGCCGATGGGGAGATGTTGTTTTCGACATTT
TCGATAAAGATGGAAGCGGTACAATCAGTTTGGACGAATGGAAAGCCTAT
GGAAGAGTGTCTGGAATCTGTGCATCAGACGCAGACGCCGAGGAGACCTT
CAAACATTGCGATTTGGACAACAGTGGCAAACTTGATGTTGATGAGATGA
CCAGACAACATTTGGGATTCTGGTACACCTTGGATCCACAAGCTGATGGG
CTCTATGGCAGCTTTGTCCCCTAAGAAACATCTTAAGAAAATTTTGTATa
ttcttcattatttttgtatcaTATAACATCGCACTTGATTACCTCAAATA
TATCCATTGACATGtcatataaataaataata

Coding sequence (CDS) from alignment at sc0000146:512354..513135

>TCONS_00012676 ID=TCONS_00012676|Name=TCONS_00012676|organism=Clytia hemisphaerica|type=CDS|length=603bp|location=Sequence derived from alignment at sc0000146:512354..513135 (Clytia hemisphaerica)
ATGGCTCATCAAGAAACTGGATCCAAATACGCCGTCAAGCTTAAACCTGA
TTTTAATAATCCAAAATGGATCAACCGTCATAGATTCATGTTCAACTTTT
TGGACATCAACGGTAACGGAAAAATCACTTTGGATGAAATTGTCTCCAAA
GCTTCAGATGACATTTGCGCCAAATTGAACGCATCACCAGAACAAACACA
GCGCCATCAAGATGCTGTTGAAGCTTTCTTCAAAGCCATTGGTATGGATT
ATGGCAAAGAAGTGGAATTCCCAGAATTCCTTGAAGGATGGAAACGACTT
GCTACCAACGATTTGAAATTGTGGTCCCAAAACAAGACCACCTTAATTCG
CCGATGGGGAGATGTTGTTTTCGACATTTTCGATAAAGATGGAAGCGGTA
CAATCAGTTTGGACGAATGGAAAGCCTATGGAAGAGTGTCTGGAATCTGT
GCATCAGACGCAGACGCCGAGGAGACCTTCAAACATTGCGATTTGGACAA
CAGTGGCAAACTTGATGTTGATGAGATGACCAGACAACATTTGGGATTCT
GGTACACCTTGGATCCACAAGCTGATGGGCTCTATGGCAGCTTTGTCCCC
TAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007120XLOC_007120Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012676-proteinTCONS_00012676-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012676-exon-sc0000146-1491911889:512354..513135TCONS_00012676-exon-sc0000146-1491911889:512354..513135Clytia hemisphaericaexon
TCONS_00012676-exon-sc0000146-1510915933:512354..513135TCONS_00012676-exon-sc0000146-1510915933:512354..513135Clytia hemisphaericaexon
TCONS_00012676-exon-sc0000146-1575043694:512354..513135TCONS_00012676-exon-sc0000146-1575043694:512354..513135Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000146supercontigsc0000146:512354..513135 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
15.4492	14.2669	8.52492	16.2797	1.03965	0.668792	2.36895	3.63111	3.55667	2.05484	3.12137	3.14793	1123.41	984.379	814.331	783.986	67.9243	81.741	0.507702	4.58621	61.4317	57.9735	1.19977	4.76634	18.98	28.5054	0	1.2928	4.63257	2.36465
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR018247EF_Hand_1_Ca_BS
IPR011992EF-hand-dom_pair
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012676 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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