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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012648 ID=TCONS_00012648|Name=TCONS_00012648|organism=Clytia hemisphaerica|type=transcript|length=3792bpRun BLAST on NCBI protein sequence of TCONS_00012648-protein >TCONS_00012648-protein ID=TCONS_00012648-protein|Name=TCONS_00012648-protein|organism=Clytia hemisphaerica|type=polypeptide|length=899bp MYRICKYTKNLLNQGSRAKRVAFSTQASLFSAAEDKSSVPEYADAVIIGGRun BLAST on NCBI transcript from alignment at sc0000146:106307..127772- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00012648 ID=TCONS_00012648|Name=TCONS_00012648|organism=Clytia hemisphaerica|type=transcript|length=21466bp|location=Sequence derived from alignment at sc0000146:106307..127772- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000146:106307..127772- >TCONS_00012648 ID=TCONS_00012648|Name=TCONS_00012648|organism=Clytia hemisphaerica|type=CDS|length=45900bp|location=Sequence derived from alignment at sc0000146:106307..127772- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00012648 vs. Swiss-Prot (Human)
Match: SARDH (Sarcosine dehydrogenase, mitochondrial OS=Homo sapiens GN=SARDH PE=1 SV=1) HSP 1 Score: 1074.31 bits (2777), Expect = 0.000e+0 Identity = 510/881 (57.89%), Postives = 645/881 (73.21%), Query Frame = 3
Query: 204 KRVAFSTQASLFSAAEDKSSVPEYADAVIIGGGSIGCSTAYHLALHGMKNIVLLEKDKLSAGTTWHSAGLVWRNQPSDLSIELLNYTRHLAHFVLEKETGLSTGYNENGGLFIANNKERLQEYQRLQTLGKVYGVESYILSPKESKELYPLMNIDDLYGTMYSPGDGTIDPSSWTSALSKGAMMRGAKVVEGCEVTGVDTNIDDFGARKVTGVKTTKGEIKTNCLVNACGAWSPYIGGMCGVSVPLVAMKHAYIITEKIEGIRGMPSIRDHDASVYLKMLGDELHIGGYENNPIFIDRIAKDFAFSLYDLDWDVFSTHIEGAINRVPIVEHTEVKSTVCGPESFTADHKALVGPDIDLRGFYHACGFNSSGIMYAGGCGNQLAKWIIHGHPDLDMFAYDPSRFHHSLTSNKKWNYERSHEAYAKNYSMVFPHDEPLASRNMRKDPLHEEMVKAGCHFQERHGWERPGYFVKGDDPEVLDYDWYGNAADYEEPTPKHENYGYDKLLVGDYTFDFSEHFHKIGNEAFACRDSVAAFNMSYFAKFLLDGPDAEKAVDWIFTANMRKQPGSTTYTCMLNDKGGIMADLTVSTLDQGDGSNLFSPKTDGKGYYLAIGGAIGQFAWCHLQREIHAQKFNVNLKDVSEQAGMLSIQGPNSRTLLEELTGQDLSNEAFPFSTHKEVVIAGHKVRAIRLTFVGELGWELHIPAESCVDVYRAVMNAGEKHGIANAGYRAIDDLSIEKGYRHWHADIRDTDTPLESGLAFTCKMKSDVPFQGRSVLEQQKVDGLKKKLACFTIDEHRALLGSEGIYRNGEIVGFLRRXXXXXXXXXXXXXXXVEDPQGGVVNNAFLKEGEYQIERMGKMIPATLHLKSLFDGKNNRIKGNY 2846
+R Q + A +P A+ V+IGGGS+GC T YHLA GM VLLE+++L++GTTWH+AGL+W+ +PSD+ +ELL +TR + LE+ETGL TG+ +NGGLFIA+N++RL EY+RL +LGK YGVES++LSP E+K LYPLMN+DDLYGT+Y P DGT+DP+ + L++ A RGA+V+E C VTG+ DDFG R+V GV+T G I+T C+VN G W+ +G M GV VPLVAM HAY++TE+IEGI+ MP++RDHDASVYL++ GD L +GGYE NPIF + ++ FAF L+DLDW+VF+ HIEGAINRVP++E T +KSTVCGPESFT DHK L+G +LRGF+ CGFNS+G+M GGCG +LA WIIHG P+ DM YD RFHHSLT + +W ERSHE+YAKNYS+VFPHDEPLA RNMR+DPLHEE++ GC FQERHGWERPG+F VL+YD+YG + HE+Y Y +LL +YTF F H I E ACR + A F+MSYF KF L G DA KA DW+F+A++ + PGST YTCMLN +GG +DLTVS L ++ +P +G GYYLA+GGA+ Q W H+ + QK L D SE GM+SIQGP SR +L+E+ DLSNEAFPFSTHK + AGH VRA+RL+FVGELGWELHIP SCV VYRAVM AG KHG+ NAGYRAID LSIEKGYRHWHAD+R D+PLE+GLAFTCK+KS VPF GR LEQQ+ GL+++L CFT+++ + G E I+RNG++VG +RR FG++I K+I YGY+ DP GG V+ F+K G+Y +ERMG A HLKS FD N R+KG Y
Sbjct: 43 QRTLKEGQGTSVVAQGPSRPLPSTANVVVIGGGSLGCQTLYHLAKLGMSGAVLLERERLTSGTTWHTAGLLWQLRPSDVEVELLAHTRRVVSRELEEETGLHTGWIQNGGLFIASNRQRLDEYKRLMSLGKAYGVESHVLSPAETKTLYPLMNVDDLYGTLYVPHDGTMDPAGTCTTLARAASARGAQVIENCPVTGIRVWTDDFGVRRVAGVETQHGSIQTPCVVNCAGVWASAVGRMAGVKVPLVAMHHAYVVTERIEGIQNMPNVRDHDASVYLRLQGDALSVGGYEANPIFWEEVSDKFAFGLFDLDWEVFTQHIEGAINRVPVLEKTGIKSTVCGPESFTPDHKPLMGEAPELRGFFLGCGFNSAGMMLGGGCGQELAHWIIHGRPEKDMHGYDIRRFHHSLTDHPRWIRERSHESYAKNYSVVFPHDEPLAGRNMRRDPLHEELLGQGCVFQERHGWERPGWFHPRGPAPVLEYDYYGAYG-----SRAHEDYAYRRLLADEYTFAFPPHHDTIKKECLACRGAAAVFDMSYFGKFYLVGLDARKAADWLFSADVSRPPGSTVYTCMLNHRGGTESDLTVSRLAPSHQASPLAPAFEGDGYYLAMGGAVAQHNWSHITTVLQDQKSQCQLIDSSEDLGMISIQGPASRAILQEVLDADLSNEAFPFSTHKLLRAAGHLVRAMRLSFVGELGWELHIPKASCVPVYRAVMAAGAKHGLINAGYRAIDSLSIEKGYRHWHADLRPDDSPLEAGLAFTCKLKSPVPFLGREALEQQRAAGLRRRLVCFTMEDKVPMFGLEAIWRNGQVVGHVRRADFGFAIDKTIAYGYIHDPSGGPVSLDFVKSGDYALERMGVTYGAQAHLKSPFDPNNKRVKGIY 918 The following BLAST results are available for this feature:
BLAST of TCONS_00012648 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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