TCONS_00012496 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012496
Unique NameTCONS_00012496
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length265

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012496 ID=TCONS_00012496|Name=TCONS_00012496|organism=Clytia hemisphaerica|type=transcript|length=265bp
CGGACAATTTCTTCAGGATAGCAATTATTAATTGTATTGACGTATTCGTG
GAGAGCTGATCCAGGTTCTGGTTTCAATTCTTGTATTTTCTTCAACCCTC
CAGAAGTGACGAACACTTTACGCGCTTTCGGATCGTGCGGAAGGATCTTG
GAGAATTGCGAGACCACGTGCTTGAGAATATTAGACGGTGCGCTATGCAA
GAGTGGCTCCAAGGCTGGTAAATGGATGCAACGTTGCAAAACGTTTTTTA
AAGCTTTCTTagcct
Run BLAST on NCBI

transcript from alignment at sc0000145:85916..86477+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012496 ID=TCONS_00012496|Name=TCONS_00012496|organism=Clytia hemisphaerica|type=transcript|length=562bp|location=Sequence derived from alignment at sc0000145:85916..86477+ (Clytia hemisphaerica)
CGGACAATTTCTTCAGGATAGCAATTATTAATTGTATTGACGTATTCGTG
GAGAGCTGATCCAGGTTCTGGTTTCAATTCTTGTATTTTCTTCAACCCTC
CAGAAGTGACGAACACTTTACGCGCTTTCGGATCGTGCGGAAGGATCTTG
GAGAATTGCGAGACCACGTGCTTGAGAATATTAGACGGTGCGCTATGCAA
GAGTGGCTCCAAGGCTGGTAAATGGATGCAACGTTGCAAAACGTTTTTTA
AAGCTTTCTTagcctgaaaaaaaaaagaatttgaaaaattaattagcttA
GAAAAATAATTGGTTTAGATTAAAAATCTTCACACTGTTAAAGGGCTGAA
AATAGGGAGTTATGTTCCTGCGACTGTTAGTTTGGGTTTTAAATCCTGGT
TGCGCGGGTCAACACTGCGAATTATTCCAAATCATTTCTACCACTCATTC
GCCCTCAAAGGGTAGATACAAAAACTCACTAGACTTTAGAANTGCAAGAG
TGGCTCCAAGGCTGGTAAATGGATGCAACGTTGCAAAACGTTTTTTAAAG
CTTTCTTagcct
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007025XLOC_007025Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012496-exon-sc0000145-1491911889:85916..86128TCONS_00012496-exon-sc0000145-1491911889:85916..86128Clytia hemisphaericaexon
TCONS_00012496-exon-sc0000145-1510915933:85916..86128TCONS_00012496-exon-sc0000145-1510915933:85916..86128Clytia hemisphaericaexon
TCONS_00012496-exon-sc0000145-1575043694:85916..86128TCONS_00012496-exon-sc0000145-1575043694:85916..86128Clytia hemisphaericaexon
TCONS_00012496-exon-sc0000145-1491911889:86426..86477TCONS_00012496-exon-sc0000145-1491911889:86426..86477Clytia hemisphaericaexon
TCONS_00012496-exon-sc0000145-1510915933:86426..86477TCONS_00012496-exon-sc0000145-1510915933:86426..86477Clytia hemisphaericaexon
TCONS_00012496-exon-sc0000145-1575043694:86426..86477TCONS_00012496-exon-sc0000145-1575043694:86426..86477Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000145supercontigsc0000145:85916..86477 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.56071	0	7.5485	11.2142	195.902	148.623	94.6147	69.8219	69.8573	58.702	45.8907	58.9733	9.70292	6.32221	10.3604	8.275	15.9462	9.20162	4.27998	12.4954	10.2301	8.35149	5.19387	1.75979	187.333	110.703	6.52397	20.6398	0.0637523	7.585
Blast
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BLAST of TCONS_00012496 vs. Swiss-Prot (Human)
Match: SPAG6 (Sperm-associated antigen 6 OS=Homo sapiens GN=SPAG6 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.228e-42
Identity = 64/87 (73.56%), Postives = 78/87 (89.66%), Query Frame = -3 
Query:    3 AKKALKNVLQRCIHLPALEPLLHSAPSNILKHVVSQFSKILPHDPKARKVFVTSGGLKKIQELKPEPGSALHEYVNTINNCYPEEIV 263
            +KKA+KN+LQ+C +LPALEP L+ AP NILKHVV QFSK+LPHD KAR++FVTSGGLKK+QE+K EPGS L EY+N+IN+CYPEEIV
Sbjct:  400 SKKAIKNILQKCTYLPALEPFLYDAPPNILKHVVGQFSKVLPHDSKARRLFVTSGGLKKVQEIKAEPGSLLQEYINSINSCYPEEIV 486
The following BLAST results are available for this feature:
BLAST of TCONS_00012496 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SPAG61.228e-4273.56Sperm-associated antigen 6 OS=Homo sapiens GN=SPAG... [more]
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