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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012471 ID=TCONS_00012471|Name=TCONS_00012471|organism=Clytia hemisphaerica|type=transcript|length=1703bp
GGCCATTAAAAATCTCAAGAAAGTCCAACCACCAAGAAATATCTTTAAAG
AACTCCTCACTCAACAGACACTTGGATGACTGTTTTTGTAAGGAGCCCAT
AAGGTCCAAAATGCGACGTAGAAAGGTTCTTCCACCATAAATGACTTTAC
AGGCCCAGTTGAGACGCCCGGCAAGCTGCTGGAGCTGTCTCTTTGAGGCA
CGAGTTCGGGATTGAAAAGACATTAAGACATCTTTCAGATCACCTAGCTT
CTTATCAGGGAGTGAGAGAGTCAATGTTGTGGTATCAATCTCAACTCCTA
GAAACACTAATTTTTGACATGGTGGAACAACCTTGGAAGGGCTGATTGTG
AATCCTAGAGAAACTAGCAGGGAGCTGAGTGCAACAAAAGCAGCCTGGCA
TTCATGCTGAGACCTACCAATGATCAAGAAATCGTCAAGATATACTATGA
TCAAAGGAAAGCCTCTTCTCTGCATCATACGCCTTACACTCTGAGTCAAA
CGATGAAAAATTCCTGGTGCACTATGTGCGCCAAAGGGGAAACGTGTGTC
TTTTAGATACGTGTAGTGTTTGTCCCCACTAAATTTCCACTTCAACCCGA
GAGCATCTCGGTTGGCTGGGTGGACTGAGACAGATCTGTACGCGTGTCTC
AAATCTATCTTAGCGATGAAGAAACCTTTCCCTATCAGCCTACAGGCGTC
ATCTAGAGTCTGAAAAGATTGCCNTTTCCCACAAGCCTGTGAGCCAACCT
TACGGTTACAGGCATGTGCAAACCTGCAGGGGGACTTCTGACATCCTTTC
CTGGAATTAAACATTCTACAAATTTCTGATCCAGAAGAGAGGTGTGTCAT
AATAGCAGGACCGAAACCCTTATTGTTACCCGCAAGACCAAACAAAGAAG
AATCACTTTTGGATGAGGAAGTATCAGTGCTTTGCCCAAGCCCACGAGGT
AGCTTCGCAGCCCAGCGAGGTATGAGAACAACCTCATGTAGGTGACTGTG
GTCAGTACTCCATGAGAATCCATAAGTATGCTGCAAGATACGAAACTCAT
CATCGTAGTGCAGCACGGATTGCCATGTATACTTAGTCGCCAGTTCCAAG
ACCTTAATCGCATAGGAGAGGTATTCCTGCACATGAAGAAGGGTAGAGAG
CTTCccagaaaataataatttgtaaaaaattctAAGATTGGCAATGTTAA
ACTGTTCCATAGTGACACTATTAAGCTTAGGTTTTGTGTCCTGTAAGATC
AGAGCAAGTTTACAGTTATTATCGTAAGAGAGGATTTTCTCATCTTCAGC
TGGACGAATTCGGGAAACAAAGTCTATAATTCGTAATGCTTTACCTCTAG
TTACATCATTTGCACGGGTTGGACGAAGAAACAGTTCACTTTGCGAGATA
GGACGATTAATTTAAAGATGATTCTTGGGAATGTGAGTTTGACAAACCAA
AATTCAACAATGGAGCAGCAGCAGAACCAGCAAAATTAAACGTAGAACGA
GatgattgttgttgttgttgcgaAAGGAGAGGCCGGTGGAGTAAGGTAGA
CATTTCTGCAGACGAACGATTAAAAATGGCGGAACGGTTTTCCCCTGAGT
GGTTGCTTCGAGGTTCGGGCGGAAAGGCGGAACGGGAGGCATGGTTTCTT
GAGGCTTTCAAGCGATccaacttttctgtttgccgTTGTATTTCTTGTCT
GAG Run BLAST on NCBI protein sequence of TCONS_00012471-protein >TCONS_00012471-protein ID=TCONS_00012471-protein|Name=TCONS_00012471-protein|organism=Clytia hemisphaerica|type=polypeptide|length=403bp
MEQFNIANLRIFYKLLFSGKLSTLLHVQEYLSYAIKVLELATKYTWQSVL
HYDDEFRILQHTYGFSWSTDHSHLHEVVLIPRWAAKLPRGLGQSTDTSSS
KSDSSLFGLAGNNKGFGPAIMTHLSSGSEICRMFNSRKGCQKSPCRFAHA
CNRKVGSQACGKXQSFQTLDDACRLIGKGFFIAKIDLRHAYRSVSVHPAN
RDALGLKWKFSGDKHYTYLKDTRFPFGAHSAPGIFHRLTQSVRRMMQRRG
FPLIIVYLDDFLIIGRSQHECQAAFVALSSLLVSLGFTISPSKVVPPCQK
LVFLGVEIDTTTLTLSLPDKKLGDLKDVLMSFQSRTRASKRQLQQLAGRL
NWACKVIYGGRTFLRRILDLMGSLQKQSSKCLLSEEFFKDISWWLDFLEI
FNG Run BLAST on NCBI transcript from alignment at sc0000144:370855..372557 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012471 ID=TCONS_00012471|Name=TCONS_00012471|organism=Clytia hemisphaerica|type=transcript|length=1703bp|location=Sequence derived from alignment at sc0000144:370855..372557 (Clytia hemisphaerica)
CTCAGACAAGAAATACAAcggcaaacagaaaagttggATCGCTTGAAAGC
CTCAAGAAACCATGCCTCCCGTTCCGCCTTTCCGCCCGAACCTCGAAGCA
ACCACTCAGGGGAAAACCGTTCCGCCATTTTTAATCGTTCGTCTGCAGAA
ATGTCTACCTTACTCCACCGGCCTCTCCTTtcgcaacaacaacaacaatc
atCTCGTTCTACGTTTAATTTTGCTGGTTCTGCTGCTGCTCCATTGTTGA
ATTTTGGTTTGTCAAACTCACATTCCCAAGAATCATCTTTAAATTAATCG
TCCTATCTCGCAAAGTGAACTGTTTCTTCGTCCAACCCGTGCAAATGATG
TAACTAGAGGTAAAGCATTACGAATTATAGACTTTGTTTCCCGAATTCGT
CCAGCTGAAGATGAGAAAATCCTCTCTTACGATAATAACTGTAAACTTGC
TCTGATCTTACAGGACACAAAACCTAAGCTTAATAGTGTCACTATGGAAC
AGTTTAACATTGCCAATCTTagaattttttacaaattattattttctggG
AAGCTCTCTACCCTTCTTCATGTGCAGGAATACCTCTCCTATGCGATTAA
GGTCTTGGAACTGGCGACTAAGTATACATGGCAATCCGTGCTGCACTACG
ATGATGAGTTTCGTATCTTGCAGCATACTTATGGATTCTCATGGAGTACT
GACCACAGTCACCTACATGAGGTTGTTCTCATACCTCGCTGGGCTGCGAA
GCTACCTCGTGGGCTTGGGCAAAGCACTGATACTTCCTCATCCAAAAGTG
ATTCTTCTTTGTTTGGTCTTGCGGGTAACAATAAGGGTTTCGGTCCTGCT
ATTATGACACACCTCTCTTCTGGATCAGAAATTTGTAGAATGTTTAATTC
CAGGAAAGGATGTCAGAAGTCCCCCTGCAGGTTTGCACATGCCTGTAACC
GTAAGGTTGGCTCACAGGCTTGTGGGAAANGGCAATCTTTTCAGACTCTA
GATGACGCCTGTAGGCTGATAGGGAAAGGTTTCTTCATCGCTAAGATAGA
TTTGAGACACGCGTACAGATCTGTCTCAGTCCACCCAGCCAACCGAGATG
CTCTCGGGTTGAAGTGGAAATTTAGTGGGGACAAACACTACACGTATCTA
AAAGACACACGTTTCCCCTTTGGCGCACATAGTGCACCAGGAATTTTTCA
TCGTTTGACTCAGAGTGTAAGGCGTATGATGCAGAGAAGAGGCTTTCCTT
TGATCATAGTATATCTTGACGATTTCTTGATCATTGGTAGGTCTCAGCAT
GAATGCCAGGCTGCTTTTGTTGCACTCAGCTCCCTGCTAGTTTCTCTAGG
ATTCACAATCAGCCCTTCCAAGGTTGTTCCACCATGTCAAAAATTAGTGT
TTCTAGGAGTTGAGATTGATACCACAACATTGACTCTCTCACTCCCTGAT
AAGAAGCTAGGTGATCTGAAAGATGTCTTAATGTCTTTTCAATCCCGAAC
TCGTGCCTCAAAGAGACAGCTCCAGCAGCTTGCCGGGCGTCTCAACTGGG
CCTGTAAAGTCATTTATGGTGGAAGAACCTTTCTACGTCGCATTTTGGAC
CTTATGGGCTCCTTACAAAAACAGTCATCCAAGTGTCTGTTGAGTGAGGA
GTTCTTTAAAGATATTTCTTGGTGGTTGGACTTTCTTGAGATTTTTAATG
GCC Coding sequence (CDS) from alignment at sc0000144:370855..372557 >TCONS_00012471 ID=TCONS_00012471|Name=TCONS_00012471|organism=Clytia hemisphaerica|type=CDS|length=1209bp|location=Sequence derived from alignment at sc0000144:370855..372557 (Clytia hemisphaerica)
ATGGAACAGTTTAACATTGCCAATCTTagaattttttacaaattattatt
ttctggGAAGCTCTCTACCCTTCTTCATGTGCAGGAATACCTCTCCTATG
CGATTAAGGTCTTGGAACTGGCGACTAAGTATACATGGCAATCCGTGCTG
CACTACGATGATGAGTTTCGTATCTTGCAGCATACTTATGGATTCTCATG
GAGTACTGACCACAGTCACCTACATGAGGTTGTTCTCATACCTCGCTGGG
CTGCGAAGCTACCTCGTGGGCTTGGGCAAAGCACTGATACTTCCTCATCC
AAAAGTGATTCTTCTTTGTTTGGTCTTGCGGGTAACAATAAGGGTTTCGG
TCCTGCTATTATGACACACCTCTCTTCTGGATCAGAAATTTGTAGAATGT
TTAATTCCAGGAAAGGATGTCAGAAGTCCCCCTGCAGGTTTGCACATGCC
TGTAACCGTAAGGTTGGCTCACAGGCTTGTGGGAAANGGCAATCTTTTCA
GACTCTAGATGACGCCTGTAGGCTGATAGGGAAAGGTTTCTTCATCGCTA
AGATAGATTTGAGACACGCGTACAGATCTGTCTCAGTCCACCCAGCCAAC
CGAGATGCTCTCGGGTTGAAGTGGAAATTTAGTGGGGACAAACACTACAC
GTATCTAAAAGACACACGTTTCCCCTTTGGCGCACATAGTGCACCAGGAA
TTTTTCATCGTTTGACTCAGAGTGTAAGGCGTATGATGCAGAGAAGAGGC
TTTCCTTTGATCATAGTATATCTTGACGATTTCTTGATCATTGGTAGGTC
TCAGCATGAATGCCAGGCTGCTTTTGTTGCACTCAGCTCCCTGCTAGTTT
CTCTAGGATTCACAATCAGCCCTTCCAAGGTTGTTCCACCATGTCAAAAA
TTAGTGTTTCTAGGAGTTGAGATTGATACCACAACATTGACTCTCTCACT
CCCTGATAAGAAGCTAGGTGATCTGAAAGATGTCTTAATGTCTTTTCAAT
CCCGAACTCGTGCCTCAAAGAGACAGCTCCAGCAGCTTGCCGGGCGTCTC
AACTGGGCCTGTAAAGTCATTTATGGTGGAAGAACCTTTCTACGTCGCAT
TTTGGACCTTATGGGCTCCTTACAAAAACAGTCATCCAAGTGTCTGTTGA
GTGAGGAGTTCTTTAAAGATATTTCTTGGTGGTTGGACTTTCTTGAGATT
TTTAATGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012471-exon-sc0000144-1491911889:370855..372557 | TCONS_00012471-exon-sc0000144-1491911889:370855..372557 | Clytia hemisphaerica | exon |
| TCONS_00012471-exon-sc0000144-1510915933:370855..372557 | TCONS_00012471-exon-sc0000144-1510915933:370855..372557 | Clytia hemisphaerica | exon |
| TCONS_00012471-exon-sc0000144-1575043694:370855..372557 | TCONS_00012471-exon-sc0000144-1575043694:370855..372557 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000144 | supercontig | sc0000144:370855..372557 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0046872 | metal ion binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0046872 |
metal ion binding |
Blast
The following BLAST results are available for this feature:
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