TCONS_00012465 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012465
Unique NameTCONS_00012465
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length254

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012465 ID=TCONS_00012465|Name=TCONS_00012465|organism=Clytia hemisphaerica|type=transcript|length=254bp
GCGACATCGTGTTGTTCCTCAAGAATGACTCCCTCATCAATTCCACATAT
CAGTACGGTATCGTTCGAGAATTATTCCCAGGACGAGATTCAAAAGTTCG
GAAAGTCAAAGTCGCGTACAAGAACCATAACGAAAGCGTCTTCCGCGAGA
CGAATCGTGCAGTTCGTGAGTTAGTAGTTATCCATCAAGTGGATGAAGTT
gaTCTGGTGGATGGTTTAAATGAAATGTTTAACTTGACTAAGTGACTTTT
GCAT
Run BLAST on NCBI

transcript from alignment at sc0000144:244091..244344

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012465 ID=TCONS_00012465|Name=TCONS_00012465|organism=Clytia hemisphaerica|type=transcript|length=254bp|location=Sequence derived from alignment at sc0000144:244091..244344 (Clytia hemisphaerica)
ATGCAAAAGTCACTTAGTCAAGTTAAACATTTCATTTAAACCATCCACCA
GAtcAACTTCATCCACTTGATGGATAACTACTAACTCACGAACTGCACGA
TTCGTCTCGCGGAAGACGCTTTCGTTATGGTTCTTGTACGCGACTTTGAC
TTTCCGAACTTTTGAATCTCGTCCTGGGAATAATTCTCGAACGATACCGT
ACTGATATGTGGAATTGATGAGGGAGTCATTCTTGAGGAACAACACGATG
TCGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007004XLOC_007004Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012465-exon-sc0000144-1491911889:244091..244344TCONS_00012465-exon-sc0000144-1491911889:244091..244344Clytia hemisphaericaexon
TCONS_00012465-exon-sc0000144-1510915933:244091..244344TCONS_00012465-exon-sc0000144-1510915933:244091..244344Clytia hemisphaericaexon
TCONS_00012465-exon-sc0000144-1575043694:244091..244344TCONS_00012465-exon-sc0000144-1575043694:244091..244344Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000144supercontigsc0000144:244091..244344 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.7677	0	0	0	1.47964	4.05183	4.04331	3.35218	1.97389	5.36774	0	4.0473	0.954033	1.14344	0	0.267913	0	0.976354	0	2.00998	0	0	0	0	5.62202	4.75229	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012465 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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