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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012456 ID=TCONS_00012456|Name=TCONS_00012456|organism=Clytia hemisphaerica|type=transcript|length=813bp
GTAAACTTTTAAAGAGAAGAAGGAGAAAACGACCAGTCACAGGAGGAAAA
TGATCATTTCCACATATCCATTGCTTGCCACAAAGAGCGAGATCTTTCTG
AGTTTGGTTGGAGGATGGCCCATTACCAGTCGGTTGGAAACCATAAAGAA
TATACCCATCCTTCGTATCACTACAACGGTGGAAAAAAACTACTTAACCA
ATGTTAGAGCAATGTTAGCTGGTTTTAAAACAGAAGAGTCGAAATTATat
gtgAAGAATTGTTTGAAACTGATGTTAGTTTCGTTTCTACTTAGAGAAAG
TACTTTTGCAATATTTGATCCAACAAAAACGTATCCAAGGCTGGTTGGAA
CATCAGCATCATTCAACGAAACTGACCTAAGCACTGCTCTCCTTGAGAGT
GCCTCATTTGATGTTAAAATCGAGGGACAGGTGGTTGCTCAGGCGAATAA
TTTCATGGAAGCATTTGCAGTGATGATCGCAACGTATTATGTATTCAACC
TGGCCTACCCAAAAGAGTTGGAGTGTACATTAAGTTTTATTCAAAAATAC
ATTTTGGACATTGGAAAACATCTGGTAGAGTTAGTGGGTTAATAAATAAG
TTGAAAAAGCTCTCCTCAAATTATTTAGTACTTAATCGCATTAGAAACCG
AAAAAGACGAATTGATTTTCAAATTTGAAATAAAGATTGCATTCTTCTAT
TTGGTTCTGTAGTTCTCAATTTCTTTGTGGAGTCAAACTACCTTGTAAAA
GATTCAATTTTTATCAAAGAGGATCAAAAGCTGTTCATAAGAGTTCGTGC
AAGAGCATTTTTA Run BLAST on NCBI protein sequence of TCONS_00012456-protein >TCONS_00012456-protein ID=TCONS_00012456-protein|Name=TCONS_00012456-protein|organism=Clytia hemisphaerica|type=polypeptide|length=180bp
MIISTYPLLATKSEIFLSLVGGWPITSRLETIKNIPILRITTTVEKNYLT
NVRAMLAGFKTEESKLYVKNCLKLMLVSFLLRESTFAIFDPTKTYPRLVG
TSASFNETDLSTALLESASFDVKIEGQVVAQANNFMEAFAVMIATYYVFN
LAYPKELECTLSFIQKYILDIGKHLVELVG Run BLAST on NCBI transcript from alignment at sc0000144:465502..467335- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012456 ID=TCONS_00012456|Name=TCONS_00012456|organism=Clytia hemisphaerica|type=transcript|length=1834bp|location=Sequence derived from alignment at sc0000144:465502..467335- (Clytia hemisphaerica)
GTAAACTTTTAAAGAGAAGAAGGAGAAAACGACCAGTCACAGGAGGAAAA
TGATCATTTCCACATATCCATTGCTTGCCACAAAGAGCGAGGTGACATAT
TCTTATTAATTTTATAAATTTCTTATTAACGATTTCCAAGTGTCTTGTTG
CACTATTAGAAAATTGTATTCAGGGGTCATCTTTGTTATCATTGAATTAT
AAGTACTCCAGGTCTCTAACAGACGGGGGTCTGGAATAAGCAGGGGGTTG
GAAAAATTAATTGCCTTAAAAAGGACTTTCTTTTTCTTAGAAAGGGGTTG
ATATCCAAGAATTGAGGTGAAATGAGGAATTTTTCAAAATATTTTTTCAA
ATGTTGATAAGCTGGTAGGGTGGTTTAAGAATGTCTCAGGTGGAAATTTG
CGTTTATTTAGATACCAGAGAGTAATAGCCGATTCCCAAACTATCAAATC
ATTTTCTCTTAGATCTTTCTGAGTTTGGTTGGAGGATGGCCCATTACCAG
TCGGTTGGAAACCATAAAGAATATACCCATCCTTCGTATCACTACAACGG
TGGAAAAAAACTACTTAACCAATGTTAGAGCAATGTTAGCTGGTTTTAAA
ACAGAAGAGTCGAAATTATGTAAGGAATTTGAAACCCTCCCCATGAAAAG
TTTTTTCAGAGGGAATTTATTTCGCGAATTGGTAATAATAGAGTTGTTTT
GGAATCCCGTGTAATTATAGGGCCAAAATCAGGGTGAGAACACGCATAGG
GCGATTTCTGCTGAGTCAGCAAACGTTTGTGATTTTAGAAATCTTTTTTT
TCTGTTACATCTACAGAAAAAAGCTATATATAATAAAATCCTCATAAGTC
ATGTCGCATTTTTTAATTAAATATTATTTATCTTTTTCTTTGCAAAAAAT
AACTATTTTGACTTTGGATATTGATATCTATTGAATAATCAAAGAGCTTT
CATGCTGTAGTGATTCAATCAAATTTCACAAGATAAACCCTTTTGAGGAT
TTTATTTTATATCTTTTTTTGTCCACTTTTTCCGGACACCCTATATAACC
CCTTAGTGACCTCTGCGCCAAATTCTAGCCACATAGTATTCTTTCAAGGT
TAAGGCCTTTTTTCCTACATATTAAAATTATTATGTCTATCTAAATCTTT
TCCACCTAAGACCCTTTTTTGTTGAAATTCTACAGGATTTTTTGTTTTTA
AAAAATGTATAGCACTTAAATAAGAAAATTTACTACAACTTGATTTATCG
TTTCTTTTTTTTTTTTTAGATGTGAAGAATTGTTTGAAACTGATGTTAGT
TTCGTTTCTACTTAGAGAAAGTACTTTTGCAATATTTGATCCAACAAAAA
CGTATCCAAGGCTGGTTGGAACATCAGCATCATTCAACGAAACTGACCTA
AGCACTGCTCTCCTTGAGAGTGCCTCATTTGATGTTAAAATCGAGGGACA
GGTGGTTGCTCAGGCGAATAATTTCATGGAAGCATTTGCAGTGATGATCG
CAACGTATTATGTATTCAACCTGGCCTACCCAAAAGAGTTGGAGTGTACA
TTAAGTTTTATTCAAAAATACATTTTGGACATTGGAAAACATCTGGTAGA
GTTAGTGGGTTAATAAATAAGTTGAAAAAGCTCTCCTCAAATTATTTAGT
ACTTAATCGCATTAGAAACCGAAAAAGACGAATTGATTTTCAAATTTGAA
ATAAAGATTGCATTCTTCTATTTGGTTCTGTAGTTCTCAATTTCTTTGTG
GAGTCAAACTACCTTGTAAAAGATTCAATTTTTATCAAAGAGGATCAAAA
GCTGTTCATAAGAGTTCGTGCAAGAGCATTTTTA Coding sequence (CDS) from alignment at sc0000144:465502..467335- >TCONS_00012456 ID=TCONS_00012456|Name=TCONS_00012456|organism=Clytia hemisphaerica|type=CDS|length=1629bp|location=Sequence derived from alignment at sc0000144:465502..467335- (Clytia hemisphaerica)
ATGTGAAGAATTGTTTGAAACTGATGTTAGTTTCGTTTCTACTTAGAGAA
AGTACTTTTGCAATATTTGATCCAACAAAAACGTATCCAAGGCTGGTTGG
AACATCAGCATCATTCAACGAAACTGACCTAAGCACTGCTCTCCTTGAGA
GTGCCTCATTTGATGTTAAAATCGAGGGACAGGTGGTTGCTCAGGCGAAT
AATTTCATGGAAGCATTTGCAGTGATGATCGCAACGTATTATGTATTCAA
CCTGGCCTACCCAAAAGAGTTGGAGTGTACATTAAGTTTTATTCAAAAAT
ACATTTTGGACATTGGAAAACATCTGGTAGAGTTAGTGGGTTAAATCTTT
CTGAGTTTGGTTGGAGGATGGCCCATTACCAGTCGGTTGGAAACCATAAA
GAATATACCCATCCTTCGTATCACTACAACGGTGGAAAAAAACTACTTAA
CCAATGTTAGAGCAATGTTAGCTGGTTTTAAAACAGAAGAGTCGAAATTA
TATGATCATTTCCACATATCCATTGCTTGCCACAAAGAGCGAGATGTGAA
GAATTGTTTGAAACTGATGTTAGTTTCGTTTCTACTTAGAGAAAGTACTT
TTGCAATATTTGATCCAACAAAAACGTATCCAAGGCTGGTTGGAACATCA
GCATCATTCAACGAAACTGACCTAAGCACTGCTCTCCTTGAGAGTGCCTC
ATTTGATGTTAAAATCGAGGGACAGGTGGTTGCTCAGGCGAATAATTTCA
TGGAAGCATTTGCAGTGATGATCGCAACGTATTATGTATTCAACCTGGCC
TACCCAAAAGAGTTGGAGTGTACATTAAGTTTTATTCAAAAATACATTTT
GGACATTGGAAAACATCTGGTAGAGTTAGTGGGTTAAATCTTTCTGAGTT
TGGTTGGAGGATGGCCCATTACCAGTCGGTTGGAAACCATAAAGAATATA
CCCATCCTTCGTATCACTACAACGGTGGAAAAAAACTACTTAACCAATGT
TAGAGCAATGTTAGCTGGTTTTAAAACAGAAGAGTCGAAATTATATGATC
ATTTCCACATATCCATTGCTTGCCACAAAGAGCGAGATGTGAAGAATTGT
TTGAAACTGATGTTAGTTTCGTTTCTACTTAGAGAAAGTACTTTTGCAAT
ATTTGATCCAACAAAAACGTATCCAAGGCTGGTTGGAACATCAGCATCAT
TCAACGAAACTGACCTAAGCACTGCTCTCCTTGAGAGTGCCTCATTTGAT
GTTAAAATCGAGGGACAGGTGGTTGCTCAGGCGAATAATTTCATGGAAGC
ATTTGCAGTGATGATCGCAACGTATTATGTATTCAACCTGGCCTACCCAA
AAGAGTTGGAGTGTACATTAAGTTTTATTCAAAAATACATTTTGGACATT
GGAAAACATCTGGTAGAGTTAGTGGGTTAAATCTTTCTGAGTTTGGTTGG
AGGATGGCCCATTACCAGTCGGTTGGAAACCATAAAGAATATACCCATCC
TTCGTATCACTACAACGGTGGAAAAAAACTACTTAACCAATGTTAGAGCA
ATGTTAGCTGGTTTTAAAACAGAAGAGTCGAAATTATATGATCATTTCCA
CATATCCATTGCTTGCCACAAAGAGCGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012456-exon-sc0000144-1575043694:467245..467335 | TCONS_00012456-exon-sc0000144-1575043694:467245..467335 | Clytia hemisphaerica | exon |
| TCONS_00012456-exon-sc0000144-1575043694:466717..466873 | TCONS_00012456-exon-sc0000144-1575043694:466717..466873 | Clytia hemisphaerica | exon |
| TCONS_00012456-exon-sc0000144-1575043694:465502..466066 | TCONS_00012456-exon-sc0000144-1575043694:465502..466066 | Clytia hemisphaerica | exon |
| TCONS_00012456-exon-sc0000144-1510915933:467245..467335 | TCONS_00012456-exon-sc0000144-1510915933:467245..467335 | Clytia hemisphaerica | exon |
| TCONS_00012456-exon-sc0000144-1510915933:466717..466873 | TCONS_00012456-exon-sc0000144-1510915933:466717..466873 | Clytia hemisphaerica | exon |
| TCONS_00012456-exon-sc0000144-1510915933:465502..466066 | TCONS_00012456-exon-sc0000144-1510915933:465502..466066 | Clytia hemisphaerica | exon |
| TCONS_00012456-exon-sc0000144-1491911889:467245..467335 | TCONS_00012456-exon-sc0000144-1491911889:467245..467335 | Clytia hemisphaerica | exon |
| TCONS_00012456-exon-sc0000144-1491911889:466717..466873 | TCONS_00012456-exon-sc0000144-1491911889:466717..466873 | Clytia hemisphaerica | exon |
| TCONS_00012456-exon-sc0000144-1491911889:465502..466066 | TCONS_00012456-exon-sc0000144-1491911889:465502..466066 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000144 | supercontig | sc0000144:465502..467335 - |
Blast
The following BLAST results are available for this feature:
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