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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012324 ID=TCONS_00012324|Name=TCONS_00012324|organism=Clytia hemisphaerica|type=transcript|length=892bp
CTAAAAGTTCGCCCCTTGTTTGGAACGATGAAAGAGAAGTTCATTTATTA
CGAGAAGTGCTGGTCAGTCAGCCTCATCAATTCAAAGAGAAAACCAGAGA
AAGAGGTGAAAAATGGCAGCAGATTTCTAACAATCTCAACAAGTCTGACC
TTTTCCAAAACAAGCTTTCTGCTAGATCAGTACGAGAAAAAACAAATGGT
CTTGTCTCACGATTTCGATCAACTCAACGAGCTGAGTTAGCAGCAACAGG
AATAAATCCAGAACAATCCGAAACtgatgttttattggaagagaTTTGCT
TGCAAATTGATGAGTTTGCACGCCAAATTGCTGAAAACAACACAAAAGCC
AAGGATGCAGAACGTGATAAAATTCAAGGTGAAGAAATAAGGAAAAAGGC
AATGGAGACTCAATGCCAAACTATAAAACGAAAAACTGGTAACCAAGACG
ATGATGACGATGATAACAACAAGAAGAAGAAGTCTCGATCTTCTGGCAGC
GACACCGTTAGCTTTCTGAGAGAAAAGGCCCATATCGAATCAAAATTTAA
GGAGCAGGAATTAGAtcttcagaaaaaaagattagaACTTGATGCAGCCA
AAATTCAAAGTGACCAAAACAATTTTAACAATATGTTATTGCTGATGAGC
AATCAAATGGAACAGAACCAACAGCTAACCATGTCAATGCTTGAAAGGCT
GAAAGGACCAAATTGAATACGATAAAttaatttttggtttttatgGTATG
GACTCTTTATAAACTTATGTTTTGAAGAAGATGAACTATTCTTTTGGTTT
TATGGACTATTTACAAACTTATGTTTCAAAGAAGATGAACTATTTTTTGG
TTTTATGGGGCCTTTATGGACTATTTACAAACTTATGATCct Run BLAST on NCBI protein sequence of TCONS_00012324-protein >TCONS_00012324-protein ID=TCONS_00012324-protein|Name=TCONS_00012324-protein|organism=Clytia hemisphaerica|type=polypeptide|length=237bp
KSSPLVWNDEREVHLLREVLVSQPHQFKEKTRERGEKWQQISNNLNKSDL
FQNKLSARSVREKTNGLVSRFRSTQRAELAATGINPEQSETDVLLEEICL
QIDEFARQIAENNTKAKDAERDKIQGEEIRKKAMETQCQTIKRKTGNQDD
DDDDNNKKKKSRSSGSDTVSFLREKAHIESKFKEQELDLQKKRLELDAAK
IQSDQNNFNNMLLLMSNQMEQNQQLTMSMLERLKGPN Run BLAST on NCBI transcript from alignment at sc0000143:610729..611983- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012324 ID=TCONS_00012324|Name=TCONS_00012324|organism=Clytia hemisphaerica|type=transcript|length=1255bp|location=Sequence derived from alignment at sc0000143:610729..611983- (Clytia hemisphaerica)
CTAAAAGGTAAGTTTTATTAATTCTAGTTGCTTTAACTTATTGTCCATGC
ATAGATATGAACTTATTTTGTTTTTATATAAAAAAAACTGGTGGTTTTAT
ACACAGAAATGTCAAATTTCTTTATACATATTTTTCTTTATCTACAAAGT
TTACAAAGATTATAGATCTTGTAATAAAACTTGTATAAAATCTTTATAAT
GTATTAAAACTTTTTCAAAGCCTACGTAAAAAAGCAAATAAAATTAACTG
ATGTTTTAAGAGGAAATTTATAGAATTAATAGCATGTCAATTTGTGATTA
CAAATTTTTCCTGAGTTTGATAGGCTTTAAACACGTTCTAAACAAAGTCA
ATCCCTTTTACCTTTTTTAGTTCGCCCCTTGTTTGGAACGATGAAAGAGA
AGTTCATTTATTACGAGAAGTGCTGGTCAGTCAGCCTCATCAATTCAAAG
AGAAAACCAGAGAAAGAGGTGAAAAATGGCAGCAGATTTCTAACAATCTC
AACAAGTCTGACCTTTTCCAAAACAAGCTTTCTGCTAGATCAGTACGAGA
AAAAACAAATGGTCTTGTCTCACGATTTCGATCAACTCAACGAGCTGAGT
TAGCAGCAACAGGAATAAATCCAGAACAATCCGAAACTGATGTTTTATTG
GAAGAGATTTGCTTGCAAATTGATGAGTTTGCACGCCAAATTGCTGAAAA
CAACACAAAAGCCAAGGATGCAGAACGTGATAAAATTCAAGGTGAAGAAA
TAAGGAAAAAGGCAATGGAGACTCAATGCCAAACTATAAAACGAAAAACT
GGTAACCAAGACGATGATGACGATGATAACAACAAGAAGAAGAAGTCTCG
ATCTTCTGGCAGCGACACCGTTAGCTTTCTGAGAGAAAAGGCCCATATCG
AATCAAAATTTAAGGAGCAGGAATTAGATCTTCAGAAAAAAAGATTAGAA
CTTGATGCAGCCAAAATTCAAAGTGACCAAAACAATTTTAACAATATGTT
ATTGCTGATGAGCAATCAAATGGAACAGAACCAACAGCTAACCATGTCAA
TGCTTGAAAGGCTGAAAGGACCAAATTGAATACGATAAATTAATTTTTGG
TTTTTATGGTATGGACTCTTTATAAACTTATGTTTTGAAGAAGATGAACT
ATTCTTTTGGTTTTATGGACTATTTACAAACTTATGTTTCAAAGAAGATG
AACTATTTTTTGGTTTTATGGGGCCTTTATGGACTATTTACAAACTTATG
ATCCT Coding sequence (CDS) from alignment at sc0000143:610729..611983- >TCONS_00012324 ID=TCONS_00012324|Name=TCONS_00012324|organism=Clytia hemisphaerica|type=CDS|length=1428bp|location=Sequence derived from alignment at sc0000143:610729..611983- (Clytia hemisphaerica)
TTCGCCCCTTGTTTGGAACGATGAAAGAGAAGTTCATTTATTACGAGAAG
TGCTGGTCAGTCAGCCTCATCAATTCAAAGAGAAAACCAGAGAAAGAGGT
GAAAAATGGCAGCAGATTTCTAACAATCTCAACAAGTCTGACCTTTTCCA
AAACAAGCTTTCTGCTAGATCAGTACGAGAAAAAACAAATGGTCTTGTCT
CACGATTTCGATCAACTCAACGAGCTGAGTTAGCAGCAACAGGAATAAAT
CCAGAACAATCCGAAACTGATGTTTTATTGGAAGAGATTTGCTTGCAAAT
TGATGAGTTTGCACGCCAAATTGCTGAAAACAACACAAAAGCCAAGGATG
CAGAACGTGATAAAATTCAAGGTGAAGAAATAAGGAAAAAGGCAATGGAG
ACTCAATGCCAAACTATAAAACGAAAAACTGGTAACCAAGACGATGATGA
CGATGATAACAACAAGAAGAAGAAGTCTCGATCTTCTGGCAGCGACACCG
TTAGCTTTCTGAGAGAAAAGGCCCATATCGAATCAAAATTTAAGGAGCAG
GAATTAGATCTTCAGAAAAAAAGATTAGAACTTGATGCAGCCAAAATTCA
AAGTGACCAAAACAATTTTAACAATATGTTATTGCTGATGAGCAATCAAA
TGGAACAGAACCAACAGCTAACCATGTCAATGCTTGAAAGGCTGAAAGGA
CCAAATTGAAAAAGTTCGCCCCTTGTTTGGAACGATGAAAGAGAAGTTCA
TTTATTACGAGAAGTGCTGGTCAGTCAGCCTCATCAATTCAAAGAGAAAA
CCAGAGAAAGAGGTGAAAAATGGCAGCAGATTTCTAACAATCTCAACAAG
TCTGACCTTTTCCAAAACAAGCTTTCTGCTAGATCAGTACGAGAAAAAAC
AAATGGTCTTGTCTCACGATTTCGATCAACTCAACGAGCTGAGTTAGCAG
CAACAGGAATAAATCCAGAACAATCCGAAACTGATGTTTTATTGGAAGAG
ATTTGCTTGCAAATTGATGAGTTTGCACGCCAAATTGCTGAAAACAACAC
AAAAGCCAAGGATGCAGAACGTGATAAAATTCAAGGTGAAGAAATAAGGA
AAAAGGCAATGGAGACTCAATGCCAAACTATAAAACGAAAAACTGGTAAC
CAAGACGATGATGACGATGATAACAACAAGAAGAAGAAGTCTCGATCTTC
TGGCAGCGACACCGTTAGCTTTCTGAGAGAAAAGGCCCATATCGAATCAA
AATTTAAGGAGCAGGAATTAGATCTTCAGAAAAAAAGATTAGAACTTGAT
GCAGCCAAAATTCAAAGTGACCAAAACAATTTTAACAATATGTTATTGCT
GATGAGCAATCAAATGGAACAGAACCAACAGCTAACCATGTCAATGCTTG
AAAGGCTGAAAGGACCAAATTGAAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012324-exon-sc0000143-1575043694:611977..611983 | TCONS_00012324-exon-sc0000143-1575043694:611977..611983 | Clytia hemisphaerica | exon |
| TCONS_00012324-exon-sc0000143-1575043694:610729..611613 | TCONS_00012324-exon-sc0000143-1575043694:610729..611613 | Clytia hemisphaerica | exon |
| TCONS_00012324-exon-sc0000143-1510915933:611977..611983 | TCONS_00012324-exon-sc0000143-1510915933:611977..611983 | Clytia hemisphaerica | exon |
| TCONS_00012324-exon-sc0000143-1510915933:610729..611613 | TCONS_00012324-exon-sc0000143-1510915933:610729..611613 | Clytia hemisphaerica | exon |
| TCONS_00012324-exon-sc0000143-1491911889:611977..611983 | TCONS_00012324-exon-sc0000143-1491911889:611977..611983 | Clytia hemisphaerica | exon |
| TCONS_00012324-exon-sc0000143-1491911889:610729..611613 | TCONS_00012324-exon-sc0000143-1491911889:610729..611613 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000143 | supercontig | sc0000143:610729..611983 - |
Blast
The following BLAST results are available for this feature:
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