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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012307 ID=TCONS_00012307|Name=TCONS_00012307|organism=Clytia hemisphaerica|type=transcript|length=1319bpRun BLAST on NCBI protein sequence of TCONS_00012307-protein >TCONS_00012307-protein ID=TCONS_00012307-protein|Name=TCONS_00012307-protein|organism=Clytia hemisphaerica|type=polypeptide|length=348bp MAIFSNLVVFALCWFVTSADFVEDFVDNAMEDFGDSPDLKRHRIVMPGVSRun BLAST on NCBI transcript from alignment at sc0000143:191427..206108- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00012307 ID=TCONS_00012307|Name=TCONS_00012307|organism=Clytia hemisphaerica|type=transcript|length=14682bp|location=Sequence derived from alignment at sc0000143:191427..206108- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000143:191427..206108- >TCONS_00012307 ID=TCONS_00012307|Name=TCONS_00012307|organism=Clytia hemisphaerica|type=CDS|length=13611bp|location=Sequence derived from alignment at sc0000143:191427..206108- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00012307 vs. Swiss-Prot (Human)
Match: AMD (Peptidyl-glycine alpha-amidating monooxygenase OS=Homo sapiens GN=PAM PE=1 SV=2) HSP 1 Score: 218.009 bits (554), Expect = 3.793e-62 Identity = 113/298 (37.92%), Postives = 165/298 (55.37%), Query Frame = 3
Query: 213 IVMPGVSPQKPDTVLSYAMEMP-DQDLYIIRFEPIGNMKVAHHMLLFSCEEPFLKNKIWKNGHLHPKKCKDGYKAEMKYAWGKNAPPLQMPKDVAYHIGGSSKAKYFVLEVHYLHVDSFKDGKTKDHSGFAFITTSKRPKYFAGIYLIQNKHFFIPPHQKKFHVSAECRYRNKEGMKMHAFRFLVHSHKMGTVISGYLLRNGKYTLIGKGDPQRPQAFNTVDNEVDIQDGDIVVAQCTYNSMERNRITKYGQTHKDEMCTFNLMMYYEAKYGDKKPACLKAKGP---FTFPKDSDVTL 1094
I MPGV+P++ DT +M +P D++ ++I F+P +M HHMLLF C P W C D KA + YAW +NAPP ++PK V + +GG + +KYFVL+VHY + +F+D KD SG + T AG+YL+ + IP +K + C Y+N MH F + VH+H +G V+SGY +RNG++TLIG+ PQ PQAF V + VD+ GD++ A+C + R T G T DEMC +M Y EAK+ C + P T P ++++ +
Sbjct: 61 IRMPGVTPKQSDTYFCMSMRIPVDEEAFVIDFKPRASMDTVHHMLLFGCNMPSSTGSYW---FCDEGTCTD--KANILYAWARNAPPTRLPKGVGFRVGGETGSKYFVLQVHYGDISAFRD-NNKDCSGVSLHLTRLPQPLIAGMYLMMSVDTVIPAGEKVVNSDISCHYKN---YPMHVFAYRVHTHHLGKVVSGYRVRNGQWTLIGRQSPQLPQAFYPVGHPVDVSFGDLLAARCVFTGEGRTEATHIGGTSSDEMCNLYIMYYMEAKHAVSFMTCTQNVAPDMFRTIPPEANIPI 349 The following BLAST results are available for this feature:
BLAST of TCONS_00012307 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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