TCONS_00012307-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00012307-protein
Unique Name	TCONS_00012307-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	348

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00012307-protein ID=TCONS_00012307-protein|Name=TCONS_00012307-protein|organism=Clytia hemisphaerica|type=polypeptide|length=348bp
MAIFSNLVVFALCWFVTSADFVEDFVDNAMEDFGDSPDLKRHRIVMPGVS
PQKPDTVLSYAMEMPDQDLYIIRFEPIGNMKVAHHMLLFSCEEPFLKNKI
WKNGHLHPKKCKDGYKAEMKYAWGKNAPPLQMPKDVAYHIGGSSKAKYFV
LEVHYLHVDSFKDGKTKDHSGFAFITTSKRPKYFAGIYLIQNKHFFIPPH
QKKFHVSAECRYRNKEGMKMHAFRFLVHSHKMGTVISGYLLRNGKYTLIG
KGDPQRPQAFNTVDNEVDIQDGDIVVAQCTYNSMERNRITKYGQTHKDEM
CTFNLMMYYEAKYGDKKPACLKAKGPFTFPKDSDVTLAEMEQRTKGSV

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_006924	XLOC_006924	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00012307	TCONS_00012307	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000720	PHM/PAL
IPR024548	Cu2_monoox_C
IPR000323	Cu2_ascorb_mOase_N
IPR014784	Cu2_ascorb_mOase-like_C
IPR020611	Cu2_ascorb_mOase_CS-1
IPR008977	PHM/PNGase_F_dom

Vocabulary: **Biological Process**
Term	Definition
GO:0006518	peptide metabolic process
GO:0055114	oxidation-reduction process

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0003824	catalytic activity
GO:0005507	copper ion binding
GO:0016715	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced ascorbate as one donor, and incorporation of one atom of oxygen
GO:0004497	monooxygenase activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0006518	peptide metabolic process
cellular_component	GO:0016020	membrane
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0005507	copper ion binding
molecular_function	GO:0004497	monooxygenase activity
molecular_function	GO:0016715	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced ascorbate as one donor, and incorporation of one atom of oxygen

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000720	Peptidylglycine alpha-hydroxylating monooxygenase/peptidyl-hydroxyglycine alpha-amidating lyase	PRINTS	PR00790	PAMONOXGNASE	coord: 73..94 score: 51.95 coord: 292..311 score: 49.29 coord: 246..265 score: 54.29
IPR024548	Copper type II ascorbate-dependent monooxygenase, C-terminal	PFAM	PF03712	Cu2_monoox_C	coord: 185..311 e-value: 3.9E-33 score: 114.1
IPR000323	Copper type II, ascorbate-dependent monooxygenase, N-terminal	GENE3D	2.60.120.310		coord: 27..185 e-value: 5.8E-34 score: 116.8
IPR000323	Copper type II, ascorbate-dependent monooxygenase, N-terminal	PFAM	PF01082	Cu2_monooxygen	coord: 44..160 e-value: 2.1E-19 score: 70.0
IPR014784	Copper type II, ascorbate-dependent monooxygenase-like, C-terminal	GENE3D	2.60.120.230		coord: 186..335 e-value: 4.5E-38 score: 129.7
IPR020611	Copper type II, ascorbate-dependent monooxygenase, histidine-cluster-1 conserved site	PROSITE	PS00084	CU2_MONOOXYGENASE_1	coord: 84..91
IPR008977	PHM/PNGase F domain	SUPERFAMILY	49742	PHM/PNGase F	coord: 36..181
IPR008977	PHM/PNGase F domain	SUPERFAMILY	49742	PHM/PNGase F	coord: 181..322

Blast

[Close]

BLAST of TCONS_00012307-protein vs. Swiss-Prot (Human)
Match: AMD (Peptidyl-glycine alpha-amidating monooxygenase OS=Homo sapiens GN=PAM PE=1 SV=2)

HSP 1 Score: 218.009 bits (554), Expect = 9.968e-64
Identity = 113/298 (37.92%), Postives = 165/298 (55.37%), Query Frame = 0

Query:   44 IVMPGVSPQKPDTVLSYAMEMP-DQDLYIIRFEPIGNMKVAHHMLLFSCEEPFLKNKIWKNGHLHPKKCKDGYKAEMKYAWGKNAPPLQMPKDVAYHIGGSSKAKYFVLEVHYLHVDSFKDGKTKDHSGFAFITTSKRPKYFAGIYLIQNKHFFIPPHQKKFHVSAECRYRNKEGMKMHAFRFLVHSHKMGTVISGYLLRNGKYTLIGKGDPQRPQAFNTVDNEVDIQDGDIVVAQCTYNSMERNRITKYGQTHKDEMCTFNLMMYYEAKYGDKKPACLKAKGP---FTFPKDSDVTL 337
            I MPGV+P++ DT    +M +P D++ ++I F+P  +M   HHMLLF C  P      W         C D  KA + YAW +NAPP ++PK V + +GG + +KYFVL+VHY  + +F+D   KD SG +   T       AG+YL+ +    IP  +K  +    C Y+N     MH F + VH+H +G V+SGY +RNG++TLIG+  PQ PQAF  V + VD+  GD++ A+C +    R   T  G T  DEMC   +M Y EAK+      C +   P    T P ++++ +
Sbjct:   61 IRMPGVTPKQSDTYFCMSMRIPVDEEAFVIDFKPRASMDTVHHMLLFGCNMPSSTGSYW---FCDEGTCTD--KANILYAWARNAPPTRLPKGVGFRVGGETGSKYFVLQVHYGDISAFRD-NNKDCSGVSLHLTRLPQPLIAGMYLMMSVDTVIPAGEKVVNSDISCHYKN---YPMHVFAYRVHTHHLGKVVSGYRVRNGQWTLIGRQSPQLPQAFYPVGHPVDVSFGDLLAARCVFTGEGRTEATHIGGTSSDEMCNLYIMYYMEAKHAVSFMTCTQNVAPDMFRTIPPEANIPI 349

The following BLAST results are available for this feature:

BLAST of TCONS_00012307-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00012307-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
AMD	9.968e-64	37.92	Peptidyl-glycine alpha-amidating monooxygenase OS=...	[more]

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TCONS_00012307-protein (polypeptide) - C. hemisphaerica