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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012294 ID=TCONS_00012294|Name=TCONS_00012294|organism=Clytia hemisphaerica|type=transcript|length=782bp
TCATTGCAGTAGATCAAGATTCTCTTGGCAAGATGGGAAGACGAGTTTAC
AAAGATAATAACCAACAAACGTGGGTCAAACCTTTAGCTGACGGTGGAAT
GGCTGTGGCTATCATGAGCACTCGTGAAGATATTCCTGTTTTTATGAGCG
TCGATTTCAAACTGCTGAACATTACCGGATCATGGAATGCACGTGATTTG
TATGCTTTGAAAGATCTTGGCTCTTACGAAGGAAGTTTCAAAGCCATGGT
CAACCCTTCTGGTGTAGTCATGGTCAAACTCACGAAAGCGTCGCGTGTCA
TTTCTGCTgattttgtttaaaatggtTGATTGAAGAATTAGTTTATTGAA
GATTATTGcatttttaggagatttttttggatttttttattagttttccA
CACAGATTTTTATATTGAACATAGAATTTTCATATAAGATAAAGATCTTT
TTACATTTAGGGTGTCAATTTTAGCTTTCAATAAATTCGAATAAACACAC
AAAGTCATCGAGTTGGGGAGAGGCAAAATACCTTAAGACTGTCTCGATGG
ACTATAAAATCGCAAAAGTTATGGAAACAATGGTTATGAAGTTAAAGAAA
GAAAGTTAAAATCATTGATTTTGACTCTTGCTTCTCAGAATCGAAACAAT
CGAAATAATTGATCCGAATTTGTATCACTAACCAATTGTTGTTAATATGA
TTGTATATGATTTTGCATTCTTTTGAAGTAATATATGATATTAGTAGAAA
TATGTTTTATTATTATGGTAAGAATTTATGCA Run BLAST on NCBI transcript from alignment at sc0000143:448758..458570+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012294 ID=TCONS_00012294|Name=TCONS_00012294|organism=Clytia hemisphaerica|type=transcript|length=9813bp|location=Sequence derived from alignment at sc0000143:448758..458570+ (Clytia hemisphaerica)
TCATTGCAGTAGATCAAGATTCTCTTGGCAAGATGGGAAGACGAGTTTAC
AAAGATAATAACCAACAAACATGGACCAAACCTTTAGCTGATGGTGGAAT
GGCTGTGGCTATCGTGAGCACACGTGAAGATATTCCTGTTTTTATGAGCG
TCGATTTCAAACTggtaaaatattctttttattaCGCTTCGGTTTCATGG
GCATACCAGGCTCCAGGTGTGTTAGGTGGGGCACCACTCTTTTTTTCCCT
GGATTGCTCTACTTAATaatgatccttctcttaattgctgagcatcaagc
agagggACATGATatacagtagcgtagacaggagggatGCAAAATtcgtg
taggagagcagatgaCACTGTTACTATCTGttcataatataaaaacatga
ttactgtgtcataaaaatctgctctcctacacaaattttacgcccccttg
tctacgctactgagaTATACCATTTGTACTAAGTACCAACCTTGAATACG
TATTGTGAGAGTTTAAACGTTTCCATTCGACTATTATTGCTTGCTTCATT
TTCATTCCAGCTGAACATTACTGGATCATGGAATGTACGTGATTTGTATG
CTTTGAAAGACCTTGGCTCTTACGAAGGAAGTTTCAAAGCCATGGTCAAT
CCTTCTGGTGTGGTCATGGTCAAACTGACGAAAGCTTCGCGTGTCATTTA
TGCTGATtttatttagtaaaaaaaagAACCATTCAATGATCTGGTTTCTc
tatttaggaatttttttattgaacagAAAGTTTTGAGATAATTgtgtttt
ttattcagttttttagagattttttttgttttttatttgaaatagtTTTG
TATATAGATTGTCTTAAATTTAGTAaataggattttttaagcataaCGCA
TGCAGTTTGTGTTCCTACATAATCCATAATTTGATTCAAAATGGCGATAA
AAGAGGAAAGACGAAGCGGGTGAAAACCAGTATGTAacatttaatatatt
ttttcgttttagtAGAATATTAGGAAAACAAAAANAAAGACGAAGCTGGT
GAACCAGTATGTAACATTTAATATATATTTTCGTTTTAGTAGAATagtag
aaaaacaaaaatgaaaaaactgacATCAGTTTTGGTATTCTGTATCCTGG
TTGGGTGTGGCATCAATGGTCTTAACATCAAGAACAAGAAAGATTTTCGA
GCTACACCGCCAAGTACGTAAaacttaactttttgatttgatgTAGGTac
atctatcaaccttttattAACTTCGGCTTTTTAGTGTTTTGGTTATTGGT
TTTGGTTACAAGTTCACTTTAAACGTTCACGACACCAAGGactaaaatga
cgtcaatttttgacgaagaccctgcaatgttattttttgtaagagcaacg
gaactctagtttttttttttaattattttcaactgaggattgtttgtaaa
aacatgaaactgccagtattgaaaaaataattttcattactttaacTACG
ATAGTGTTTTGGTTATAAATTTTCaaggaaatgacgtcaaaattctttgt
tttatgAGAATGCCAATGCAACGCCTTCCTCCTGATTCTTCCTTGTAAAC
TCGAGCCCAGCCTCCCCACGTTTTAAAGGTTGATAATAGTAtcttcatga
tatgcaccattgcaatgtcttccacggacccaacagctgattggttgact
GATTGactgacgtattgactgattttacgtcacttacaaccaatcagagt
ccgtgatgtaatgtcaaaagacattgcaatggtgcatattatgTATTGGA
AAGGAAGAGTTTTTGACTCTTTTACTCTCTCGTATTTACAGTCCTTATCA
GTCCcggtcccggggggggggggactagggcaagatgggttacggggatg
ctccgctggtcagggtaccttttctaacctccacgagtcccaggtagggt
cgcaaaaacaccaaaatagaaaaatcagtccctcttAGGgtgcttttttt
ggaaaatttgggaaaaaagtagacaattttggaatttcagtcccattcag
ggtcacttttttcgctaatttcgagtcccacgtagggtccatttttcgaa
cctcagcggagcacccccgtcggtcgaCAAGGGTagtccccccccccccc
ggggtccCGGCctagtttttcttttgttcgGTCACTACGAAATTTGTTCA
TCATTAAATTATTATCTTAAATTTACAGTGGGATGGCTTCAATGGGAAAG
ATATCGTTGTATTCTCGATTGTGAAACCTATCCTGATGATTGTATAAGGT
GAGAATTCGCTTGAGTATTCTTCCTCTATCAGCCTATTCAATATTTAATC
CGTAAAATCGCACTTAAAAAAACACTACTcctgaaaatgactaaaaactg
aaaagaatccaaaatttaaaatcactTTTTCATTAGTTCACAAGGTATTA
TAGTAGGGGTGATCCATTTTTACCTGTTTTGGGGGTTAGGAGTTTTACCT
GTAACGTCAGTTGTTttaccataaaaacttttgccaggCGTAATTCGCCG
tccccctctcaaaaaagtatcaaaatccTATTTACTTTTGAACCAATTAC
ATGTGGTTGCCATGAAAGATGCTACAGATCCTAAGGGTTAGTCGTCGCTC
ACAAAAAGTTGGTTCTCTAAGAAGTTCGAGAGAACAATCCCTTGCATCTT
GTTTTACTTTGTACAATAACCATTAACGAAACGTTCTCATATTTCTAGAG
ATTCGTTGTTTATGCGTCAAGGGAAACGTTTACATGATGATGGTTATGCA
GCAGCCGGATATGTCCATGTCAACATCGATgtgagaaagattttttctgc
gaaatatttcttttactATATCTTATTTATTGCAACCATGGGATTTATAA
CATAATACCCAGTGGCTTTTATGATGATTCCCCGTCGGCACCTTTTGAAC
TCATACAATTCACCTTGCACAATCTCACAATCTACTGATATTGGTGATTA
AATTTGAGTCAAACTTTCCAACTCTCAATGATAGAGGAGCTtacctttca
aactttttatctAATTGGTGAAAGAAGGGGAGAATCTATAAAATACTCAT
TTATTTTGTTCAGCAAAGAAGATGATAACTAATTAAAAAAGGACTTTCAT
TCAAAATGTGCTAGAAAGTTCAAATGGAATCAACTTTGTAAACAACGATT
TCTTTCTTCATTTAGGATTGTTGGTCAGAAATGGAACGTGATGGAAACGG
TACACTTGTTGCTGACAAAAAACGGTTCCCGAATGGACTTAAATCTTTAG
CTGATTACGTAAGCTGGCTTCAATTTAATATTTACCTCTAGATACAATGA
AGTTTATCCTGACTAGTCTCTAAAAACATATTAGATGTAGTAGATGAGCT
AAGGCATGGAAATATCTCTATCTGTCTGTCAGTTGCAGAAACATTGTAGC
AAATGGTTGGATGTTGCCTGACAATTTGCATACTTATATTTTAATGGAAA
ATGTTTCTTGGGAATTCTCCTTGTTATTAAGTTATTCCCTTGGTGAAAAA
TGGagtttttttccgattttcgaaaaactccTGTGTGACGTTCGACTATT
TTGCTTACTATTCTGCTTTACAgaagattgttcttaatttgttctcgGGT
TGGGACCTAAATTGAGCCCCGGGTTTTAAAGTATATAAACTATCTTTCTC
ACATCATTTTAGATGCACAATTTGGGATTGAAGTTGGGTATATACACAGG
TAAATGGATGAATCCGTCAATATTCACATTTTGCCGATAGTTAATGGCTT
TCGAAATAATAAAACTGTGCTATATCTAAACGACACAGTAATAACTATAA
CAGAAGATACTATAACTTtattaatcgcacgatgggttattttttcttat
ttggcacgccctcaaagagagcaattaatcgttaatcacactctccaatg
ctgcgccaatgtttacaaaattgattttaatgttttttcttacatttttt
ttttgcatcgaacgttttaattgcattcaaaattcattttgtgagaaaga
aaatctataaacaacaataaaagaaagacatagagagaagagaaaaatat
aaaactctcagtgtaatttctttaatttactttcctaactgggaaaaatt
AGTgacagccattgtgcgattagctcgtaaccacataataactcgtacaa
ttcgaaaattgcactcgtgatttttttgtttcgagtttaataacaaaaaa
atcactcgtgcaattatattcgaattgcactcgatatcatgtgattacat
atacttatTTCATTTATAGACATGGGAACAAAAACATGTGCAGGTTACCC
AGCCGCCATTTTTCATATGCAGAAAGATACACAGGTATAGACTCAtaatt
aatttgtttttcttgaaattttaattGTTGCTAGATAGTGTACTCTATTC
AAAACATTTcaatcttcataactcgaacatttCTGATCCTTGCAAATACA
GAGGGGCTGTATCCGAGATATAAGAGAGTCGAAGCTTCTGATCTCCTTAC
ATTTAGCATGACTAGCGAAACAAAAATGCGAATCTTCATTGGTCAACGTT
GCACCATGCCTTATTATTGAGTTAATACATTTGCAATTCATTCGGAATAA
CCcgccgtttttatcttaaacttgTGGAAACTAAAAGTGTTGATTCACCT
TCGTCCTCAGTCATTCAGGATCtacaatcagtcagaaaaatattgacagg
agAGGCTTTAAAATGACTCCCCTTCCCCCTGGTATAAATGTTGGGTAGTT
GGAAGTGTCTGTTGCATAACTCGTCTGTTGGGTCGCTCAAAAACATTGAT
ATGAGGGGGAAGGGGAGTGAACTAGATTTCTACTCTACTGCCAACATATT
AACTGACTGATTGTAGATGAATCAGATGCTAACTGTCCCCGTCGCAGGAA
AACCAAGCtacataaactcgcttttgaAGTATAGTacgcaatattttcac
attttaaTTATGAAGTCTTTCTATTCAATTTTCCTTTCTATCCACCCAGA
CGTTTGCAGACTGGGGAATAGACATGATCAAATTAGATGGTTGTAACTCG
TGCACAGACCTCTTCAAAGCTGGACATGAAGCGTTCAAATTCTACATCAA
TCAGACGGGCCGTGAAATTTACTATTCGTGTGAATGGCCCACATACTTGC
CAGAAGATAAACCAAAGGTAAATGTTAAAGATTAACACGTTCGCTGCCAA
CTACGTGTAGtatggggggggggcgtacggcgTTTGCGATTTTCGAAATA
CCGAATAACTTTactaaaatttccgaaatttcgTAAAAGAATACTTGCAA
TTTCGATACCGAtttttttggggtatttttcttcgttttgactaactttt
catcaaatttgatttttcatgtatgaattcctaaaaaaggggataaaaaa
ctttataatgCCGAAATgccgaagcaaaaattcatatATTTCCGATTCCG
AAACAATTttagaattccgaaataccgaaggaattttgcctgatttccga
aattccgaagaaaaaggGTCGATCTCCGCAATTCCAaaaaaccgtacgcc
ccccataCGTAGAAGGGGGCGGGAGGTCAAAATATCTGTggtatttttta
aatctatgtAAAATTCTGCGTCGTTTGGTATACAATGTACAGGCATTGGA
AAATTCAGGTCACAGGAACctttgaaagtcaattttcgaaACTATAGTTC
TCTTCTGTATAAGTGTGCAACTCTTGTTTATCGACACTCTGCGTACATTT
CTGGTTTGACCGATTATTCTTtcttcatgatatgcaccattgcaatgtct
tccacggagcCAACAAcagattggttgaaagtgacgtattgattgatttg
atgtcacttacaaccaattaGCTATTAAGtctatgatgtaatgtcagaag
acattgcaatggtgcatatcatgaattctttaTGAATATGAATAAAAACC
CTTTCGGTGCACAAGCAGAGAGTTCGCGCATTCTCAAACCGAGTCAGACC
GAGGTTAAGATTTGAATAAATTTGAGTATTAGGTCTGGTACAGATAGAAC
CTATAAAAATTTCCAAGAGATTTTGACAAATTCTTAACATTGCCTTGTCT
CGACCAAATACCGCTGTTGCTTATCAAGTTtatattgttatcatcaaaac
aaaattttaacctATGCTTATCGTATCGACTTTTTTAGCCATATGCTGAC
ATTGCAAAAGTTTGCGACATGTGGAGGAATTACCAAGATGTACAGGTAAT
TAAAATTATCgatttcaaattcaattgaCTCTCACCTGAATCTTTTCAAT
GCTACAGAAAAGGTTCAAGGATGCTCTCTCGAGTGCTTCAATGTAGTGAT
AAGGTCTAAATAGTGTGATAAGTCGAGGTGTGAGGGAGAATCACAATCAG
CGGGAGGGATGTGCTTTTTAGGAACCTGGGGAGTAAACCCACTCCTTtgg
tattttcttattttcttaatttcttcCTCACAAGTGTAAACACCTAGTTA
ATCCTTCCAAATCATTTTAGTGATTCAAAGAAAGGGATCGATTTCATTCT
GAATTATATTCCTTACATTCAAAGAAATTAAGTTACACAACATATTCACA
GGCGAAATGGATCAATGGAATCAGGACCGATTGCGCCTCGACAACGGCTT
cccgttggttagacgcaaaaacATCGAAAAACTTAGACCAACAGAACGTT
GTTATCGGTGGGTGgttctgattacccatgattcatttcgaccgtgaaat
gCACCTCATTGCTCAACTACGACGCTTTTTAAAATGATAGTTCATTTTTC
CCTGTTTCTCATTACCAGGATTCGTGGAGTAGTGTGATGAATATTATCAA
TTACAATGGAGATCACCAAGACGAAATGATCCCTTACATCAAACCTGGTG
CATTCAATGATCCTGATATGGTAAAAGCATGGAGCATTCTCTTAAAACCC
TTTATTAATTTAAGTAACCTCCATAGGATTGAAATCACTATTCCATCTTT
ACACTGTGAGAGTGTATACTTAACCaatgttttatttcatttgatgattt
taacctGGCACCTTTTTACCTCGGGNAAGAGTGTATCCTTAGCCAATGTT
TGATGATTTTAGCCTGGCTCCTTTTTACCTTGGAGCTGATTTTCTCGAGT
ATTAAAACATTCTTAGTATTTCTATAGGAATATTCTGGCTTTCTGGTCTT
GCTAAATTATGAATTATTCCGAATCTGGATACCATACTCCCTAGTGCCAG
ACGTGTCATAAAACTTCTAGTTACAGATTAATTTTACGTCTATTCTTTTG
ATAAGACCGCAAGCATTGTGAAAGACTGAAGAAAACCCTCGCATGTTGTC
CCAACCCAACCCATCACAATAATGGAGCTTTTATGTTTAGGATTGAATTg
tatctttattttttcattccagCTTTTAATTGGTGACTACAGCTTGAGTG
AAGATCAAtcgaaaacacaatttgcaaTCTGGTCCATCTTAGCAGCTGTG
AGTAATGGATCGTCCTCAATAAAGTTGAAAAGTTATTTTAAACCTTCAGA
CTCATCAAAAGCCAACtgtttatagtttgttctaagAGCATTCAAACTGG
ATGATTTTATGTTCTTTACTCTCTTTTTTTCAGCCATTGATGATCTCAGC
AAATTTGGAGACAATGAAAGATTGGCAAAAAGCTATTTTGTTGAACGAGT
AAGTCACTTCCGTCTATTGATCTTCTGAGCTTTCTTCATCCAAAGGATAC
ATTGACTGACCTCTGGCTATTATCAAAGTATCTTCTTAAGTCGTAATGgg
tcatttctttttttatccATACTTACAGGGGGTAGGCGAACATTTTTATG
GGGcaatacaaaaaaatttcaaggtgTCTAAAGGAGTGttttgttttaca
tttttccagggggtgaaaagtttttctaaaatttccagatgggagactga
ttttagttcgtatTTTTTCCAtgaatttattttgcaaattttgccatttt
ccagcgGGTTTTCCTTCTTACTACTGCTTCCGTTTTATTCCTGAGAAATT
ATGAATTATCTCTCTTCAGGGAGATCATTGCAGTAGATCAAGATTCTCTT
GGTAAAATGGGAAGACGAGTTTACAAAAATAGCAACCAACAAACGTGGGT
CAAACCTTTAGCTGACGGTGGAATGGCTGTGGCTATCATGAGCACTCGTG
AAGATATTCCTGTTTTTATGAGCGTCGATTTCAAACTGGTATGAATCTCC
ATATTATTGAAATTAGTTATACACAATTGCCTGTATAATACAAATATTTA
CCCTAAAGAAAACAAGCTCAAAAATACGCTCAGCCCTTCAAACctagtag
taagtaagtaattctgcgaccgcagtcggaggcgacccgaaggctcctct
ttcgatagctatctacctcaATCAGTGACAAAGtagtaagtgctctaaag
taggttcgaagggtagagttataactctgagttttaacgctagacttgaG
GCTTAGGACCTtgggatctgaggatccaaaagttcaaaaatggtccagta
ggtcttgaaatatagcctagaaaccaataaatccctcccagatcgaaata
accGATGAAATTATataagttgaaggcctgaaattgacattctcgctcga
acttcaattttcgaaaaatggtaaattagctaaaagtgccaatatgttat
ggcactgattgctgaaggtaggggagggcgccactctttacccttgatcc
ttctcttaattgctgagcatcaagcaaagaggcaccaagtaccattttgg
gaatcttaggtatgacccggctgggggttgaacccacaaccttgtgaacc
gtagccggatgctctaccacggCACTACGGTTTTCCCTTAAACCTGGTTG
ACCAATTCACGTTTAAAATGGCCCAAACTGAAAGctaaacacgttttttt
ataagaaccagtaaattgtGGTTTAGCCtgagattgttcttaaatttgtt
aaattgcttttgctttttaataaaatctgttTTAGGAGATATAAAATTAT
CTTTAGAATGGTACAAAAACATTGTTTAATTCTCTAGGGActacaagctt
ttatgccattttgaagttttgactATGTATAATTTTTCATTCCAGCTGAA
CATTACCGGATCATGGAATGCACGTGATTTGTATGCTTTGAAAGATCTTG
GCTCTTACGAAGGAAGTTTCAAAGCCATGGTCAACCCTTCTGGTGTAGTC
ATGGTCAAACTCACGAAAGCGTCGCGTGTCATTTCTGCTgattttgttta
aaatggtTGATTGAAGAATTAGTTTATTGAAGATTATTGcatttttagga
gatttttttggatttttttattagttttccACACAGATTTTTATATTGAA
CATAGAATTTTCATATAAGATAAAGATCTTTTTACATTTAGGGTGTCAAT
TTTAGCTTTCAATAAATTCGAATAAACACACAAAGTCATCGAGTTGGGGA
GAGGCAAAATACCTTAAGACTGTCTCGATGGACTATAAAATCGCAAAAGT
TATGGAAACAATGGTTATGAAGTTAAAGAAAGAAAGTTAAAATCATTGAT
TTTGACTCTTGCTTCTCAGAATCGAAACAATCGAAATAATTGATCCGAAT
TTGTATCACTAACCAATTGTTGTTAATATGATTGTATATGATTTTGCATT
CTTTTGAAGTAATATATGATATTAGTAGAAATATGTTTTATTATTATGGT
AAGAATTTATGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012294-exon-sc0000143-1491911889:448758..448827 | TCONS_00012294-exon-sc0000143-1491911889:448758..448827 | Clytia hemisphaerica | exon |
| TCONS_00012294-exon-sc0000143-1510915933:448758..448827 | TCONS_00012294-exon-sc0000143-1510915933:448758..448827 | Clytia hemisphaerica | exon |
| TCONS_00012294-exon-sc0000143-1575043694:448758..448827 | TCONS_00012294-exon-sc0000143-1575043694:448758..448827 | Clytia hemisphaerica | exon |
| TCONS_00012294-exon-sc0000143-1491911889:456952..457045 | TCONS_00012294-exon-sc0000143-1491911889:456952..457045 | Clytia hemisphaerica | exon |
| TCONS_00012294-exon-sc0000143-1510915933:456952..457045 | TCONS_00012294-exon-sc0000143-1510915933:456952..457045 | Clytia hemisphaerica | exon |
| TCONS_00012294-exon-sc0000143-1575043694:456952..457045 | TCONS_00012294-exon-sc0000143-1575043694:456952..457045 | Clytia hemisphaerica | exon |
| TCONS_00012294-exon-sc0000143-1491911889:457953..458570 | TCONS_00012294-exon-sc0000143-1491911889:457953..458570 | Clytia hemisphaerica | exon |
| TCONS_00012294-exon-sc0000143-1510915933:457953..458570 | TCONS_00012294-exon-sc0000143-1510915933:457953..458570 | Clytia hemisphaerica | exon |
| TCONS_00012294-exon-sc0000143-1575043694:457953..458570 | TCONS_00012294-exon-sc0000143-1575043694:457953..458570 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000143 | supercontig | sc0000143:448758..458570 + |
Blast
The following BLAST results are available for this feature:
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