TCONS_00012269 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012269
Unique NameTCONS_00012269
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1392

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012269 ID=TCONS_00012269|Name=TCONS_00012269|organism=Clytia hemisphaerica|type=transcript|length=1392bp
ATAAAAGAGTAAAACTTTACTAGgccactttttaagttttactaAGTAGG
TTATACCCTAACATGAATTTTGGATTCCTGCTTTTTATCTGAAATGATAt
gaaaagtatttcaaaaatgaatttttcagtcTCGTGATTTAAAACAtgtc
ttttgtcttttcttCCAGGACCCCTTGGGACACCTATTGGAAAAGGTCAC
GTTTCTCTGAATCTTACTCTTAGAAGaacATTCAATTTGTTTGCGAACGT
ACGTCCTTGTCGTTCAATAGAAGGTTACAAAACAGCATATGATGACGTCA
ACATTGTGACCATTCGTGAAAACACTGAAGGAGAATACAGTGGTATTGAA
CACATGGTTGTAGATGGAGTTGTTCAGAGTATCAAACTGATCACCAGGCA
AGCTTCAGAACGTATCGCAAACTATGCTTTCGACTATGCTCGCTCAAATA
ACAGGACGTCAGTAACGACAGTACACAAAGCTAATATCATGAGACTATCA
GATGGTTTATTCTTGCAATGTTGCCGCGAAGCTAGTGAAAGAAATCCCGA
TATCCAATACAACGAGGTCTTCCTCGATACTACCTGTTTAAACatggTAA
AAGACCCTTCAATTTATGATGTATTAGTTATGCCGAACTTGTATGGTGAC
ATTTTAAGTGATCTTGGAGCTGGATTGATCGGTGGTCTTGGACTGACACC
CTCCGGAAATATCGGTATGGACGGTGTAGCCGTCTTTGAAGCTGTGCATG
GTACAGCTCCAGACATTGCTGGACAAGACAAAGCCAACCCAACAGCTTTG
TTATTGAGTGGTGTCATGATGTTGCGGCACATGAAACTCAACTCGTACGC
CGACACCATCGAAAACGCATGCTTCAAAACAATCGCTGAAGGAAAAGCGA
CAACTGGTGATTTAGGTGGTCGATCCTCGTGCACAGATTACACGAATGAA
ATTATTCGACACATCGAAGAGTCTTCATGAAAGAGCGAGGCCACAAAACG
GAAATCTGGAGCTGAGCACTTTTGAAGCACTTagtttcacttttcttttg
aatgCCTTTGTTTGATTGCACTTAGTATATTTTTTCCAGTTGACTTCCAT
TCCGACCTTGTTGTTTTATTGTATAGTTTTGCAAAAATGTATAAACCcta
aaaatgtataattttagaataattatgaaaatgtgaaaattgaaatgacc
aaaaaatgaacaatgaatattatttttaacaataacaaaaataaacctAT
TTGTCAAATATTATAAGAAAATGTATATAAGAGGCTTCGACGATTAAAAT
TCAAGAACATTTAATAACATCTTAAGGATTTGCTTACTCTAACACATACA
ATTTCTTAAAAGATAATACCTAGAAAGAGTACTGAAAATAAC
Run BLAST on NCBI

protein sequence of Isocitrate/isopropylmalate dehydrogenase

>TCONS_00012269-protein ID=TCONS_00012269-protein|Name=Isocitrate/isopropylmalate dehydrogenase|organism=Clytia hemisphaerica|type=polypeptide|length=208bp
MVVDGVVQSIKLITRQASERIANYAFDYARSNNRTSVTTVHKANIMRLSD
GLFLQCCREASERNPDIQYNEVFLDTTCLNMVKDPSIYDVLVMPNLYGDI
LSDLGAGLIGGLGLTPSGNIGMDGVAVFEAVHGTAPDIAGQDKANPTALL
LSGVMMLRHMKLNSYADTIENACFKTIAEGKATTGDLGGRSSCTDYTNEI
IRHIEESS
Run BLAST on NCBI

transcript from alignment at sc0000143:343212..351312+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012269 ID=TCONS_00012269|Name=TCONS_00012269|organism=Clytia hemisphaerica|type=transcript|length=8101bp|location=Sequence derived from alignment at sc0000143:343212..351312+ (Clytia hemisphaerica)
ATAAAAGAGTAAAACTTTACTAGgccactttttaagttttactaAGTAGG
TTATACCCTAACATGAATTTTGGATTCCTGCTTTTTATCTGAAATGATAt
gaaaagtatttcaaaaatgaatttttcagtcTCGTGATTTAAAACAtgtc
ttttgtcttttcttCCAGGACCCCTTGGGACACCTATTGGAAAAGGTCAC
GTTTCTCTGAATCTTACTCTTAGAAGGTAGTACATATTTTTCTCGAGGTC
AAAAGATAATTGAAATTACATGTGTTTTATAATACTGTGACAAATAACTG
GTGAATTATATTTTGACAAAGTATTTTTTGTGATcatctttttatctttt
tctaaTGGTAATTTTCTATAATCGATCTTTTACAATTCTTGgaaaataat
ttcataattGGAAAAATAGTACACGCAATCTTAGGCAAAATATTATGTCT
GCCATTAGAAATAGAATTGGGGCATGCTAGGATCATTTTTGTGTAATTGA
AAACTACGACTTCTTATTAactatttttcaagattttaatactgttcttc
ttttttttatagaacATTCAATTTGTTTGCGAACGTACGTCCTTGTCGTT
CAATAGAAGGTTACAAAACAGCATATGATGACGTCAACATTGTGACCATT
CGTGAAAACACTGAAGGAGAATACAGTGGTATTGAACACATGGTAAGAGA
TTTAATATCATTAGGTTATacatttttcccattttttctGATGCGCACAA
AAAAGCCCAGGAATTGACCCCTGTTATAATTATAAACAAAGGGTTAGATT
CTAGGAAGAATGGCGTTTTTTAAACTAGGGGGTATCACACAGGAAAACAC
TTTAAAACGGGTCACCTATAGCTCCATAGTCAAGATTTCACCCTCCAGGA
TCTAGATCTTACTTATTTGGAGTCTTTACCTCAATAACATAGACTTATTC
ATACTATGTCTTATGTTAGAGGATTTTAGATCAGTGGAATGTAGACATTG
GGCTGTTTTATTAAAATCCacagagcccccccccccaatctttttaagtc
aaaattattatttgaaatgtgtataccccctgaaaaatggcaaaGTTTGC
AAATAAACTCttaggaaaaattcttttcataccttaagtGATGTGTTGGA
TGAGTGATGTTAGTGAACTGAAACCAGTCTTTTGCCCCCTGAAAATTCCT
CTCAGTTTCCTCCCTGGAAATGCTCGTCCTGTATGGTTTTAAAATGGAAT
GGTTATCAGATAATGCTATTTCGTTCATCATCTTTTTCACCAGGTTGTAG
ATGGAGTTGTTCAGAGTATCAAACTGATCACCAGGCAAGCTTCAGAACGT
ATCGCAAACTATGCTTTCGACTATGCTCGCTCAAATAACAGGACGTCAGT
AACGACAGTACACAAAGCTAATATCATGTAAGAAAATGGATTATTTCGGT
TAAAAGGAGACGTCTAAAAATCAATGTGATTGTTCACTTATTTTGAAGTA
TGTGTAATGACttattttgatctttttcatgcaaagatCTTAAACTGGAA
ACCTTAAATCAATCTTGCGTACGATTGTAGTGAAAGATGCTAGACTAACT
TGGCTAAATATTTCAAACTAGGGGCTGAAGCGAGGCTTTATAGCTCGACA
TAGTTTAGCATATTTTGCTGAGTGGAGGAAAGAAATTAGATCTTTTTTTT
TGTGGAGAAgcttatcaaaatttttctagAGCTTTGCgcatcttttttta
taaatgttgTATGTGGAATTACTATTTTACGGACTTTTTCGACAGACACT
CAGAGACACGAAAATAGATTACTTTAAAACATAAGGCATGTTTACCCAAC
AATTGGCTGTATGTGattcattcttataaaatgattcttttaatttattC
ACTTGCAGGAGACTATCAGATGGTTTATTCTTGCAATGTTGCCGCGAAGC
TAGTGAAAGAAATCCCGATATCCAATACAACGAGGTCTTCCTCGATACTA
CCTGTTTAAACGTGAGTCCCCATCTTCATTTAGTAGATACAACTCTCATT
TCACCTTTCACATGTGCCAATAGGGTACCCAGTTACTTTATACAACCAGT
TATTGCGACTTCAATTTTTCTGCAGCTactaccactgacctttatatatc
ctggaccaagctatattcaccatctttgattggagttatgagaaaagtgg
tacccttGGTAGCACTACTCGATGTTGAATTTGTAATGAAATTTTCCGTT
TAAAAGTTGTTCAACCAACACTGAgaagtgctaccattagggtaccattt
AAAAAAACTCCGATTAATGATTTTGGCTGACCGGGATCGAGAAACTGTGT
TCAAGATATATAAAGTTTAGTGGCTACCAATCAGAAATTATGTCGTCGCT
GCTGTttctcaaaaagaaatttaaaagatGGACGTTAAAACTGAAAATGT
CATCGTTCTTCAAAGTAGCCCGGTGACCCCTAGTCTTAAATGAGTTTGAT
GGACAGGGGACATGTGTTGTGCGAGGTTTAGGAAAACTCAATGTCACTCC
CAGGACGCATGACCTTTATCATGTCATGAACTATGATTGGATTTTGTTCA
ATTCCTCGGGGGAAAAAAGGAGTTTTCCAAAcgtgtttttctcattttga
ctTCTATCCGCAGACACATGTTTCGTCCTCATTTTGACTTCTCATTAATA
TTTTACTACTTCTCGACGAAATGGaaataaaatactataatgACAATAAT
tgatatcattttcaaaaaaggccttTCCAAGCCGTTTCTATTCGAAAGat
actttgaaattttaacgATCGCATGAAATTGCACAAagtaagaaaaatct
tttgatttttttaccaGAAAAGTAATTTCCTTTATTGCACTTGTCTGTCC
GTTTCCACGCTATGCGAAAATGATGTTTTCAAACAGaatattctttattt
tcaccCACATAGACATATCAAGAGATATTTTTGAAAGAGGCGCTACTATt
ccttttgaataaaaaaaaattaaactgtcGAAAGTATTGTATTCTTGACA
TTTATGAAGTAATtatttatacggaaacacccgaaaaacacCGGACGTTT
GCCATCAGTTTCGTATGTTAAACAATGTTTACGGATATTTCCGTATGAAA
GATCATGCTATGACTAACAGCACGAATTGCATTTGCCTTGTTATGAGACC
AGTAATTTGATTGCCATGGACGTTCTTTGTTAACCTCGCAACTGTCGATA
TAAAAGTGGATATCTAACTGTGTATCAGGCGAAGATGTTTCAGTTCTAGA
TGGTGCGTCGTCGTTTCGAGAATAAAGAAATTTGGTATACTGTACTTGGC
GTTAATTCTATGAATCTTAACAACTATATTTTAAATTTCACGAACAAAAC
TACTGACCACTACGGAAGATATTTGAATTAGACGTCGCATTGTCGTTTCA
AGAACAGCAAACTTTGTTATACACAAGCATCATTTCATTATAAACTTCGC
TAAAACGATAGTTGGAATTTTACGAACAAAACTTATGTCCGACAGGAACG
CGGAAATATTTGCGTTCGCGAAGCCATGCACTGGTCTATGATCATCATCT
TCACCATCTTTGCAATCGAAATACTATTATCAACGTCCGTCACTTTATTC
ACCTCTCTTGTCATACTACGTTGTCCATCCCTTCGATCAACATACATAAA
CATACTGATGTCTTTGCTATTTCTATCACACACTTTTGGCGGTCTGATGA
ACAGTGCATACATCACGTATCTTTTAAACATTAACTATGATCCGAAAACC
GGCATGAGTTTTACGAGAGACTTTTTCTATAGCCTCCTTATGAATTTTAC
TCTTTTGGTGTCGAGTGTTCGGTTCATCTCCATTTACAAACCGTTCTTCT
ATCAAACATTGACTCGCAAACATGGCGTCACAGCTATATGTGTCAGTGTT
CTGACTACAATTCTTTTCACTATATGCAGAGTGTTTTCAACAAAAGTCTA
TTATACCTTAGCATTTTTGATCGCTCATCTGTGGGCCGTCATACTTTTGA
CAAGTAACATATGGTTGTATCGCTTTGTTAAGCGCCAGTGTTGTCGAATT
GCGGTTACAATTGTAGCGCCCACACGGGAAGAGCAAACACGACAACGTCA
CCAAACGAAACGTCGCTCAATAAAAGCTTTGAAAATGTGCGTTCTGATTC
TAGCTACTTATTTCATTACAGTTTGCCCTGGGCTCATGTACTTTTTAGCC
AAGCGTTTGTTCCTGAAATTCGAAAACTCTATCAATTATTCGGCACTGTT
GGAAAACCCTAATGCTTACATTTATTTGGAGTCCATCGCCGTCATGTTAA
ATATATCGAACAGTTTTTGGGACACCATTGTCTTTTATAAATATAACAGT
GACGCCAGAAGGCAAGCTATGGGAATTGTACGACGGCTTGCAGCGACAAA
GAACGTCACCTCGCCTGTCGGAATCActcaaaatgttgcaaatgAAAGCA
CTGCTTAAGACTAGACTAACCTACTCGGAAGTTAAAACACGGTGATAAAA
TGGATAAGCGGGCGCTGTCTTACTTAAAACAGTCGTAGTAATGGCTCCTT
TCATGTGGCTACTTGCTCTTCATATTTGCCGGTCTCGGTCACGTTAAGAT
ATAATTTTACCAAATATGGAAATCTTTGTCCAATACCCTTATCTTTGAAG
GTCGCGAAACTTATGGAAAGCTTGGATTACTAAAGGTACCAGCATCGTAT
TCAGACTTTATAGCATTAACgcgggcggccgccaatacaccATCGAAGTA
TCAGAATAGCAGAGAATAGTGATGAACACTCGCCTTAATTCAAGGTTACA
GTGGAGAAAAGACTGGTTCTCATGAAAAAGCctttaccttatcggggaaa
aaaatgtcgggggaaagtgacgaaaattttgagggggtgacgaaattttt
cccaacgaaatatttccccgacatttatcacccgaccaaaacatGTACCC
GATTTTTTATACCATAactaaaattcaaatcaaaattttttacaccttta
tttaccgaaattTGTGCCTTAAACGTCaaattacaagatctattttctag
ctagtgaaggaaaccatttcttttggacagtttcgtcgggtgaaagtgac
aaatttgaaatttttgtcgtggaaaagtgacgaatttgaaattttggtcg
gggaaaagtgacgaaaatgcctgtaggtgacgaaatttttctccgacgaa
aaaaaaaaccgactaaataaaaccccgacattttttccccgataaggtat
tttatttaaatcactatTAGGTTGTCATATTTCTTATTATTATATAAccg
taggcaaaaacagccattgaataattccgaATATACCACGGCTATTATAC
AAAAgtagaatttcttttttcaaattttgctttaaaaGTTTGATTGTTTT
AATCGCTCTtgcaggcacgacggaagctttttatatctggtacggcgaat
gaggaaatttaagcgattttatagcgattttaccgacgaagaggaaaact
tcgggtatttttgtgaaaatctggtacggcgggCGCCGgacctgccgtac
ccgttgcgtcgtgcttttcttttttttttttaaaaaaaaaaaagaaaagc
acgacgcaacgggtacggcaggtccggcggccgccgtacctgccgtaccc
gttgcgtcgtgcctgtCTTGTTGTTTATCAAAGAACTTTATTTTAAcgac
tcaaagtaattaagaaaatcattaaaaagaaaaacattcgaacgttccaT
TATGGCAGTGAATCGTTCGTCGATTTACATACGAGAAAAATTCCAGTCAG
ATTTTTGTTGAACCAATCCTATGGAGCGCATGATGTATTATTTTATACca
tttgtgttttcttttttagatggTAAAAGACCCTTCAATTTATGATGTAT
TAGTTATGCCGAACTTGTATGGTGACATTTTAAGGTAAACTATCTAATAA
TAATTGGCAGGTTTTAATATTTAGAAACAAGCCAGAATTTATAAACTCAG
AATAACTCAAATTTTTAACTCCACTAAAAGAGGGGAGGTTGGCTAAACGA
AAGCAAAATGTGGAGggtgttttttcctttttggcATGAATTTCTAACAG
ACTAATTTCTCCATTCCTTCCTCTGATTACTCTTTTATTTCTGCGGCGTG
TGATTTTGTACAATCTATTTTTCTGCTGAAGTTGTTAAAACGAAAATTTC
ACAATTTCGCATTTCCCTCCTTTTAACAGTGATCTTGGAGCTGGATTGAT
CGGTGGTCTTGGACTGACACCCTCCGGAAATATCGGTATGGACGGTGTAG
CCGTCTTTGAAGCTGTAAGTCATTTTCGTTTTATTCTTTCAACCAAATGa
ttctttgttatttttctttagtttaaCGAGTTTGTTTTTGTAGCATTTGT
CTTCGAAGCTCTATGATAAATCAATTGTGAACTTTTTTACTATGGGTTTG
CTTGGAATAGGACTAGAAAATTCCCGTCCATGTGTTTATATACctgaaag
gaagaaattttgcggGAATCTGATTTGGCGGAATGcaacagaaaattaaa
tttaacaGGAATTTAGTTTGGCAGATGACGAAAAAACGTCCATTTGATGG
gaacttaaatttggcggatttttgccaaaatcgccaaaataagtccccgc
caaaatttctccctTTAAAAGGTATACAGCATTTTAATTGATATTTTGAG
TTCTCAAAAGTTCTCAAGCATATCTTAAACGTCTAAGAATTTAAAGCTTT
CAGACTTTTCAGGGAGTATAAAAGTTTCAGTCTGTTTTCCGAAGATCAGA
TGACTAAGCATTATTTCCGTTCCCATTGTTAGTTGAAACGTACGTTTATC
TCTAGATCTATTATTCagtttctttaatttcttcAGGTGCATGGTACAGC
TCCAGACATTGCTGGACAAGACAAAGCCAACCCAACAGCTTTGTTATTGA
GTGGTGTCATGATGTTGCGGCACATGAAACTCAACTCGTACGCCGACACC
ATCGAAAACGCATGCTTCAAAACAATCGCTGAAGGAAAAGTAAGGctact
ttctttttataaagtGCTCTAATTACCTAATATTGAGCTATCCtagaaag
gtttttttttaatctatgtTACGGAGGTCATTTTTCTTAAGGGGCTGTCC
CGgattttttggtaaatttttaagATGCCCCTAAGATTTTTGTCGGAATG
CCCCTTGGATTTTCCAGGATCAGGTTTTTGAGGGCCGCCTCTGCACTGAA
AGTATGGCCGCGTCAACATTGGGGTAACTGGATAGACaaacaatgataaa
aatatataataagaaaaaaattcagaatttgaGCATTTTTCTGATCTTTC
TGTAAGAATTCAAGAATAATTTCTAGAATAGCCAAATAGAGCACTTTCAA
ACGGTCAATCTTCTAAAGAACGCCATGGGGAAAGACCCTTTTTCCTTTAT
ACTAAACTCATATTAAGTTGTAAGTGTagctcttaaaaaaaaaaaacttt
gaacctTTGAAGATTCAAATTGTTGAAcaatcataattttatttcttttc
tccAGGCGACAACTGGTGATTTAGGTGGTCGATCCTCGTGCACAGATTAC
ACGAATGAAATTATTCGACACATCGAAGAGTCTTCATGAAAGAGCGAGGC
CACAAAACGGAAATCTGGAGCTGAGCACTTTTGAAGCACTTagtttcact
tttcttttgaatgCCTTTGTTTGATTGCACTTAGTATATTTTTTCCAGTT
GACTTCCATTCCGACCTTGTTGTTTTATTGTATAGTTTTGCAAAAATGTA
TAAACCctaaaaatgtataattttagaataattatgaaaatgtgaaaatt
gaaatgaccaaaaaatgaacaatgaatattatttttaacaataacaaaaa
taaacctATTTGTCAAATATTATAAGAAAATGTATATAAGAGGCTTCGAC
GATTAAAATTCAAGAACATTTAATAACATCTTAAGGATTTGCTTACTCTA
ACACATACAATTTCTTAAAAGATAATACCTAGAAAGAGTACTGAAAATAA
C

Coding sequence (CDS) from alignment at sc0000143:343212..351312+

>TCONS_00012269 ID=TCONS_00012269|Name=TCONS_00012269|organism=Clytia hemisphaerica|type=CDS|length=4389bp|location=Sequence derived from alignment at sc0000143:343212..351312+ (Clytia hemisphaerica)
ATGGTTGTAGATGGAGTTGTTCAGAGTATCAAACTGATCACCAGGCAAGC
TTCAGAACGTATCGCAAACTATGCTTTCGACTATGCTCGCTCAAATAACA
GGACGTCAGTAACGACAGTACACAAAGCTAATATCATGAGACTATCAGAT
GGTTTATTCTTGCAATGTTGCCGCGAAGCTAGTGAAAGAAATCCCGATAT
CCAATACAACGAGGTCTTCCTCGATACTACCTGTTTAAACatggTAAAAG
ACCCTTCAATTTATGATGTATTAGTTATGCCGAACTTGTATGGTGACATT
TTAAGTGATCTTGGAGCTGGATTGATCGGTGGTCTTGGACTGACACCCTC
CGGAAATATCGGTATGGACGGTGTAGCCGTCTTTGAAGCTGTGCATGGTA
CAGCTCCAGACATTGCTGGACAAGACAAAGCCAACCCAACAGCTTTGTTA
TTGAGTGGTGTCATGATGTTGCGGCACATGAAACTCAACTCGTACGCCGA
CACCATCGAAAACGCATGCTTCAAAACAATCGCTGAAGGAAAAGCGACAA
CTGGTGATTTAGGTGGTCGATCCTCGTGCACAGATTACACGAATGAAATT
ATTCGACACATCGAAGAGTCTTCATGAATGGTTGTAGATGGAGTTGTTCA
GAGTATCAAACTGATCACCAGGCAAGCTTCAGAACGTATCGCAAACTATG
CTTTCGACTATGCTCGCTCAAATAACAGGACGTCAGTAACGACAGTACAC
AAAGCTAATATCATGAGACTATCAGATGGTTTATTCTTGCAATGTTGCCG
CGAAGCTAGTGAAAGAAATCCCGATATCCAATACAACGAGGTCTTCCTCG
ATACTACCTGTTTAAACatggTAAAAGACCCTTCAATTTATGATGTATTA
GTTATGCCGAACTTGTATGGTGACATTTTAAGTGATCTTGGAGCTGGATT
GATCGGTGGTCTTGGACTGACACCCTCCGGAAATATCGGTATGGACGGTG
TAGCCGTCTTTGAAGCTGTGCATGGTACAGCTCCAGACATTGCTGGACAA
GACAAAGCCAACCCAACAGCTTTGTTATTGAGTGGTGTCATGATGTTGCG
GCACATGAAACTCAACTCGTACGCCGACACCATCGAAAACGCATGCTTCA
AAACAATCGCTGAAGGAAAAGCGACAACTGGTGATTTAGGTGGTCGATCC
TCGTGCACAGATTACACGAATGAAATTATTCGACACATCGAAGAGTCTTC
ATGAATGGTTGTAGATGGAGTTGTTCAGAGTATCAAACTGATCACCAGGC
AAGCTTCAGAACGTATCGCAAACTATGCTTTCGACTATGCTCGCTCAAAT
AACAGGACGTCAGTAACGACAGTACACAAAGCTAATATCATGAGACTATC
AGATGGTTTATTCTTGCAATGTTGCCGCGAAGCTAGTGAAAGAAATCCCG
ATATCCAATACAACGAGGTCTTCCTCGATACTACCTGTTTAAACatggTA
AAAGACCCTTCAATTTATGATGTATTAGTTATGCCGAACTTGTATGGTGA
CATTTTAAGTGATCTTGGAGCTGGATTGATCGGTGGTCTTGGACTGACAC
CCTCCGGAAATATCGGTATGGACGGTGTAGCCGTCTTTGAAGCTGTGCAT
GGTACAGCTCCAGACATTGCTGGACAAGACAAAGCCAACCCAACAGCTTT
GTTATTGAGTGGTGTCATGATGTTGCGGCACATGAAACTCAACTCGTACG
CCGACACCATCGAAAACGCATGCTTCAAAACAATCGCTGAAGGAAAAGCG
ACAACTGGTGATTTAGGTGGTCGATCCTCGTGCACAGATTACACGAATGA
AATTATTCGACACATCGAAGAGTCTTCATGAATGGTTGTAGATGGAGTTG
TTCAGAGTATCAAACTGATCACCAGGCAAGCTTCAGAACGTATCGCAAAC
TATGCTTTCGACTATGCTCGCTCAAATAACAGGACGTCAGTAACGACAGT
ACACAAAGCTAATATCATGAGACTATCAGATGGTTTATTCTTGCAATGTT
GCCGCGAAGCTAGTGAAAGAAATCCCGATATCCAATACAACGAGGTCTTC
CTCGATACTACCTGTTTAAACatggTAAAAGACCCTTCAATTTATGATGT
ATTAGTTATGCCGAACTTGTATGGTGACATTTTAAGTGATCTTGGAGCTG
GATTGATCGGTGGTCTTGGACTGACACCCTCCGGAAATATCGGTATGGAC
GGTGTAGCCGTCTTTGAAGCTGTGCATGGTACAGCTCCAGACATTGCTGG
ACAAGACAAAGCCAACCCAACAGCTTTGTTATTGAGTGGTGTCATGATGT
TGCGGCACATGAAACTCAACTCGTACGCCGACACCATCGAAAACGCATGC
TTCAAAACAATCGCTGAAGGAAAAGCGACAACTGGTGATTTAGGTGGTCG
ATCCTCGTGCACAGATTACACGAATGAAATTATTCGACACATCGAAGAGT
CTTCATGAATGGTTGTAGATGGAGTTGTTCAGAGTATCAAACTGATCACC
AGGCAAGCTTCAGAACGTATCGCAAACTATGCTTTCGACTATGCTCGCTC
AAATAACAGGACGTCAGTAACGACAGTACACAAAGCTAATATCATGAGAC
TATCAGATGGTTTATTCTTGCAATGTTGCCGCGAAGCTAGTGAAAGAAAT
CCCGATATCCAATACAACGAGGTCTTCCTCGATACTACCTGTTTAAACat
ggTAAAAGACCCTTCAATTTATGATGTATTAGTTATGCCGAACTTGTATG
GTGACATTTTAAGTGATCTTGGAGCTGGATTGATCGGTGGTCTTGGACTG
ACACCCTCCGGAAATATCGGTATGGACGGTGTAGCCGTCTTTGAAGCTGT
GCATGGTACAGCTCCAGACATTGCTGGACAAGACAAAGCCAACCCAACAG
CTTTGTTATTGAGTGGTGTCATGATGTTGCGGCACATGAAACTCAACTCG
TACGCCGACACCATCGAAAACGCATGCTTCAAAACAATCGCTGAAGGAAA
AGCGACAACTGGTGATTTAGGTGGTCGATCCTCGTGCACAGATTACACGA
ATGAAATTATTCGACACATCGAAGAGTCTTCATGAATGGTTGTAGATGGA
GTTGTTCAGAGTATCAAACTGATCACCAGGCAAGCTTCAGAACGTATCGC
AAACTATGCTTTCGACTATGCTCGCTCAAATAACAGGACGTCAGTAACGA
CAGTACACAAAGCTAATATCATGAGACTATCAGATGGTTTATTCTTGCAA
TGTTGCCGCGAAGCTAGTGAAAGAAATCCCGATATCCAATACAACGAGGT
CTTCCTCGATACTACCTGTTTAAACatggTAAAAGACCCTTCAATTTATG
ATGTATTAGTTATGCCGAACTTGTATGGTGACATTTTAAGTGATCTTGGA
GCTGGATTGATCGGTGGTCTTGGACTGACACCCTCCGGAAATATCGGTAT
GGACGGTGTAGCCGTCTTTGAAGCTGTGCATGGTACAGCTCCAGACATTG
CTGGACAAGACAAAGCCAACCCAACAGCTTTGTTATTGAGTGGTGTCATG
ATGTTGCGGCACATGAAACTCAACTCGTACGCCGACACCATCGAAAACGC
ATGCTTCAAAACAATCGCTGAAGGAAAAGCGACAACTGGTGATTTAGGTG
GTCGATCCTCGTGCACAGATTACACGAATGAAATTATTCGACACATCGAA
GAGTCTTCATGAATGGTTGTAGATGGAGTTGTTCAGAGTATCAAACTGAT
CACCAGGCAAGCTTCAGAACGTATCGCAAACTATGCTTTCGACTATGCTC
GCTCAAATAACAGGACGTCAGTAACGACAGTACACAAAGCTAATATCATG
AGACTATCAGATGGTTTATTCTTGCAATGTTGCCGCGAAGCTAGTGAAAG
AAATCCCGATATCCAATACAACGAGGTCTTCCTCGATACTACCTGTTTAA
ACatggTAAAAGACCCTTCAATTTATGATGTATTAGTTATGCCGAACTTG
TATGGTGACATTTTAAGTGATCTTGGAGCTGGATTGATCGGTGGTCTTGG
ACTGACACCCTCCGGAAATATCGGTATGGACGGTGTAGCCGTCTTTGAAG
CTGTGCATGGTACAGCTCCAGACATTGCTGGACAAGACAAAGCCAACCCA
ACAGCTTTGTTATTGAGTGGTGTCATGATGTTGCGGCACATGAAACTCAA
CTCGTACGCCGACACCATCGAAAACGCATGCTTCAAAACAATCGCTGAAG
GAAAAGCGACAACTGGTGATTTAGGTGGTCGATCCTCGTGCACAGATTAC
ACGAATGAAATTATTCGACACATCGAAGAGTCTTCATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006908XLOC_006908Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
Isocitrate/isopropylmalate dehydrogenaseTCONS_00012269-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012269-exon-sc0000143-1491911889:343212..343437TCONS_00012269-exon-sc0000143-1491911889:343212..343437Clytia hemisphaericaexon
TCONS_00012269-exon-sc0000143-1510915933:343212..343437TCONS_00012269-exon-sc0000143-1510915933:343212..343437Clytia hemisphaericaexon
TCONS_00012269-exon-sc0000143-1575043694:343212..343437TCONS_00012269-exon-sc0000143-1575043694:343212..343437Clytia hemisphaericaexon
TCONS_00012269-exon-sc0000143-1491911889:343774..343903TCONS_00012269-exon-sc0000143-1491911889:343774..343903Clytia hemisphaericaexon
TCONS_00012269-exon-sc0000143-1510915933:343774..343903TCONS_00012269-exon-sc0000143-1510915933:343774..343903Clytia hemisphaericaexon
TCONS_00012269-exon-sc0000143-1575043694:343774..343903TCONS_00012269-exon-sc0000143-1575043694:343774..343903Clytia hemisphaericaexon
TCONS_00012269-exon-sc0000143-1491911889:344505..344638TCONS_00012269-exon-sc0000143-1491911889:344505..344638Clytia hemisphaericaexon
TCONS_00012269-exon-sc0000143-1510915933:344505..344638TCONS_00012269-exon-sc0000143-1510915933:344505..344638Clytia hemisphaericaexon
TCONS_00012269-exon-sc0000143-1575043694:344505..344638TCONS_00012269-exon-sc0000143-1575043694:344505..344638Clytia hemisphaericaexon
TCONS_00012269-exon-sc0000143-1491911889:345120..345222TCONS_00012269-exon-sc0000143-1491911889:345120..345222Clytia hemisphaericaexon
TCONS_00012269-exon-sc0000143-1510915933:345120..345222TCONS_00012269-exon-sc0000143-1510915933:345120..345222Clytia hemisphaericaexon
TCONS_00012269-exon-sc0000143-1575043694:345120..345222TCONS_00012269-exon-sc0000143-1575043694:345120..345222Clytia hemisphaericaexon
TCONS_00012269-exon-sc0000143-1491911889:349131..349195TCONS_00012269-exon-sc0000143-1491911889:349131..349195Clytia hemisphaericaexon
TCONS_00012269-exon-sc0000143-1510915933:349131..349195TCONS_00012269-exon-sc0000143-1510915933:349131..349195Clytia hemisphaericaexon
TCONS_00012269-exon-sc0000143-1575043694:349131..349195TCONS_00012269-exon-sc0000143-1575043694:349131..349195Clytia hemisphaericaexon
TCONS_00012269-exon-sc0000143-1491911889:349491..349575TCONS_00012269-exon-sc0000143-1491911889:349491..349575Clytia hemisphaericaexon
TCONS_00012269-exon-sc0000143-1510915933:349491..349575TCONS_00012269-exon-sc0000143-1510915933:349491..349575Clytia hemisphaericaexon
TCONS_00012269-exon-sc0000143-1575043694:349491..349575TCONS_00012269-exon-sc0000143-1575043694:349491..349575Clytia hemisphaericaexon
TCONS_00012269-exon-sc0000143-1491911889:350148..350300TCONS_00012269-exon-sc0000143-1491911889:350148..350300Clytia hemisphaericaexon
TCONS_00012269-exon-sc0000143-1510915933:350148..350300TCONS_00012269-exon-sc0000143-1510915933:350148..350300Clytia hemisphaericaexon
TCONS_00012269-exon-sc0000143-1575043694:350148..350300TCONS_00012269-exon-sc0000143-1575043694:350148..350300Clytia hemisphaericaexon
TCONS_00012269-exon-sc0000143-1491911889:350817..351312TCONS_00012269-exon-sc0000143-1491911889:350817..351312Clytia hemisphaericaexon
TCONS_00012269-exon-sc0000143-1510915933:350817..351312TCONS_00012269-exon-sc0000143-1510915933:350817..351312Clytia hemisphaericaexon
TCONS_00012269-exon-sc0000143-1575043694:350817..351312TCONS_00012269-exon-sc0000143-1575043694:350817..351312Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000143supercontigsc0000143:343212..351312 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
203.24	196.67	304.685	321.939	38.461	32.246	66.7412	64.8285	92.9493	83.7044	94.1889	100.684	106.308	114.524	75.5071	77.9422	277.226	295.824	91.6221	78.8958	214.539	219.105	111.856	112.291	249.346	241.012	77.5145	82.1112	63.2104	55.9231
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR024084IsoPropMal-DH-like_dom
IPR019818IsoCit/isopropylmalate_DH_CS
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0016616oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0051287NAD binding
GO:0000287magnesium ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
molecular_function GO:0000287 magnesium ion binding
molecular_function GO:0051287 NAD binding
molecular_function GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
Blast
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BLAST of TCONS_00012269 vs. Swiss-Prot (Human)
Match: IDH3A (Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial OS=Homo sapiens GN=IDH3A PE=1 SV=1)

HSP 1 Score: 379.407 bits (973), Expect = 8.984e-128
Identity = 196/270 (72.59%), Postives = 231/270 (85.56%), Query Frame = 3 
Query:  162 LPGPLGTPIGKGHVSLNLTLRRTFNLFANVRPCRSIEGYKTAYDDVNIVTIRENTEGEYSGIEHMVVDGVVQSIKLITRQASERIANYAFDYARSNNRTSVTTVHKANIMRLSDGLFLQCCREASERNPDIQYNEVFLDTTCLNMVKDPSIYDVLVMPNLYXXXXXXXXXXXXXXXXXTPSGNIGMDGVAVFEAVHGTAPDIAGQDKANPTALLLSGVMMLRHMKLNSYADTIENACFKTIAEGKATTGDLGGRSSCTDYTNEIIRHIEE 971
            L GPL TPI  GH S+NL LR+TF+L+ANVRPC SIEGYKT Y DVNIVTIRENTEGEYSGIEH++VDGVVQSIKLIT  AS+RIA +AF+YAR+N+R++VT VHKANIMR+SDGLFLQ CRE +E   DI++NE++LDT CLNMV+DPS +DVLVMPNLYGDILSDL AGLIGGLG+TPSGNIG +GVA+FE+VHGTAPDIAG+D ANPTALLLS VMMLRHM L  +A  IE ACF TI +GK+ T DLGG + C+D+T EI R +++
Sbjct:   95 LKGPLKTPIAAGHPSMNLLLRKTFDLYANVRPCVSIEGYKTPYTDVNIVTIRENTEGEYSGIEHVIVDGVVQSIKLITEGASKRIAEFAFEYARNNHRSNVTAVHKANIMRMSDGLFLQKCREVAESCKDIKFNEMYLDTVCLNMVQDPSQFDVLVMPNLYGDILSDLCAGLIGGLGVTPSGNIGANGVAIFESVHGTAPDIAGKDMANPTALLLSAVMMLRHMGLFDHAARIEAACFATIKDGKSLTKDLGGNAKCSDFTEEICRRVKD 364
The following BLAST results are available for this feature:
BLAST of TCONS_00012269 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
IDH3A8.984e-12872.59Isocitrate dehydrogenase [NAD] subunit alpha, mito... [more]
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