TCONS_00012232 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012232
Unique NameTCONS_00012232
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1442

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012232 ID=TCONS_00012232|Name=TCONS_00012232|organism=Clytia hemisphaerica|type=transcript|length=1442bp
atgagccaatctcgagaaaagctggtaacagacggacggacagacggacg
gacggacgaacaaaggttaatttataggacctccaggtaggtccaaaaac
tataATAAAATAGGTTAAAAACTGATTAAGATGATCCCTATTTTTTCTTT
GCAGAAGCTTTTTTAATTTGAACCAATTCTCTAAAGTCAGCAAGTACTTT
ATTTTCACGTTTAGCTTTTTCCTCTCTATTGTACATAGCTAAAGCACGTT
TCTCATCTGCACTGTatacttgattttcttttcttaaacGGACCGCTTCC
ATACGTCGATGACGACTACCACTCATAACATAGCCAGCATCTTCATAAGT
AGAAATCTCTTCACTTGTCAAACCAATTTCTCCTCTTCTGGGGATACGTT
TTCCTTCCTGTACGAACTTGGCCATAGCTTCACCTTCACCAGGAAGCAAA
GCTTCACCATAGTCTTTTGAAGTAGTTTGTTCAATTTCTGCAATAGATAA
TGGTAGGGGACCAATATTTACGTTGGCTGAAGTGGCTCTTTCAGTCCATT
CATCTTCTGCATTATCTTTAACAGATTTCTCAGAATCAGAACTTTCGCTG
TCACTACTTTTGGTGGacgactttttctttttcattttcttatgtttacc
atgtttctttttctttttactttttttgtcctttgaagatttctttttct
tctttttgtgtttatcttttgATTCCCTTCCACTCATTTCATCAGACGAG
TCTTTAATATCATTCATTTCTGAATCTATACTTGGAGCTCTAGGTGAGAA
ACCCCAAACATAAGATACTCCATCTTCAGCTATTCGATCCCTGTCAGCTC
TCCATATCTCTGTGTCCATATTGTTTCTTCCCCAATCAGATCTATCTTTG
TTTCTTCCCCAATCAGATCTGTCTTTGTTTCTTCCCCAATCAGATCTGTC
TTTGTTTCTTCCCCAATCAGATCTgtctttatttcttttatatGATTTTT
GAGAATCAGGACTTCTTGATCGGTCTCTTTTGGATCTGCTGCGATCATAT
TTTGGGCTGTAGCTTCTGTCTCGATTTCCATGCCGAATAGGACTTCGAGA
TCTAGATCTACTTCTTCTTTTATATGacatttttttatcttgatCTGAAT
TAGAAACAAGAATTTCAATAAGAGCCATCAGAAAAAAAACCTGAATTCTT
TagcatagaaaaaaagttagaagggttcaaagttgatGGAAAAAGGAATT
AATTTGGTTTAACACTAACAAAAGTTACTTGACTTATGGAGTTGTTGcta
tcaatgtcaatcaaactgTTCGAACTAACTAATTGAATTCAATCAAACAA
TATTGAACGATTATTTGATTACCAAACCAACCAGTCATCACCAAAAAATA
CCGGTAAAGTTTGATAAATTCGATTTATGCACAATCTTAATG
Run BLAST on NCBI

protein sequence of TCONS_00012232-protein

>TCONS_00012232-protein ID=TCONS_00012232-protein|Name=TCONS_00012232-protein|organism=Clytia hemisphaerica|type=polypeptide|length=346bp
MALIEILVSNSDQDKKMSYKRRSRSRSRSPIRHGNRDRSYSPKYDRSRSK
RDRSRSPDSQKSYKRNKDRSDWGRNKDRSDWGRNKDRSDWGRNKDRSDWG
RNNMDTEIWRADRDRIAEDGVSYVWGFSPRAPSIDSEMNDIKDSSDEMSG
RESKDKHKKKKKKSSKDKKSKKKKKHGKHKKMKKKKSSTKSSDSESSDSE
KSVKDNAEDEWTERATSANVNIGPLPLSIAEIEQTTSKDYGEALLPGEGE
AMAKFVQEGKRIPRRGEIGLTSEEISTYEDAGYVMSGSRHRRMEAVRLRK
ENQVYSADEKRALAMYNREEKAKRENKVLADFRELVQIKKASAKKK
Run BLAST on NCBI

transcript from alignment at sc0000141:268976..270417

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012232 ID=TCONS_00012232|Name=TCONS_00012232|organism=Clytia hemisphaerica|type=transcript|length=1442bp|location=Sequence derived from alignment at sc0000141:268976..270417 (Clytia hemisphaerica)
CATTAAGATTGTGCATAAATCGAATTTATCAAACTTTACCGGTATTTTTT
GGTGATGACTGGTTGGTTTGGTAATCAAATAATCGTTCAATATTGTTTGA
TTGAATTCAATTAGTTAGTTCGAAcagtttgattgacattgatagCAACA
ACTCCATAAGTCAAGTAACTTTTGTTAGTGTTAAACCAAATTAATTCCTT
TTTCCatcaactttgaacccttctaactttttttctatgctAAAGAATTC
AGGTTTTTTTTCTGATGGCTCTTATTGAAATTCTTGTTTCTAATTCAGat
caagataaaaaaatgtCATATAAAAGAAGAAGTAGATCTAGATCTCGAAG
TCCTATTCGGCATGGAAATCGAGACAGAAGCTACAGCCCAAAATATGATC
GCAGCAGATCCAAAAGAGACCGATCAAGAAGTCCTGATTCTCAAAAATCa
tataaaagaaataaagacAGATCTGATTGGGGAAGAAACAAAGACAGATC
TGATTGGGGAAGAAACAAAGACAGATCTGATTGGGGAAGAAACAAAGATA
GATCTGATTGGGGAAGAAACAATATGGACACAGAGATATGGAGAGCTGAC
AGGGATCGAATAGCTGAAGATGGAGTATCTTATGTTTGGGGTTTCTCACC
TAGAGCTCCAAGTATAGATTCAGAAATGAATGATATTAAAGACTCGTCTG
ATGAAATGAGTGGAAGGGAATcaaaagataaacacaaaaagaagaaaaag
aaatcttcaaaggacaaaaaaagtaaaaagaaaaagaaacatggtaaaca
taagaaaatgaaaaagaaaaagtcgtCCACCAAAAGTAGTGACAGCGAAA
GTTCTGATTCTGAGAAATCTGTTAAAGATAATGCAGAAGATGAATGGACT
GAAAGAGCCACTTCAGCCAACGTAAATATTGGTCCCCTACCATTATCTAT
TGCAGAAATTGAACAAACTACTTCAAAAGACTATGGTGAAGCTTTGCTTC
CTGGTGAAGGTGAAGCTATGGCCAAGTTCGTACAGGAAGGAAAACGTATC
CCCAGAAGAGGAGAAATTGGTTTGACAAGTGAAGAGATTTCTACTTATGA
AGATGCTGGCTATGTTATGAGTGGTAGTCGTCATCGACGTATGGAAGCGG
TCCgtttaagaaaagaaaatcaagtatACAGTGCAGATGAGAAACGTGCT
TTAGCTATGTACAATAGAGAGGAAAAAGCTAAACGTGAAAATAAAGTACT
TGCTGACTTTAGAGAATTGGTTCAAATTAAAAAAGCTTCTGCAAAGAAAA
AATAGGGATCATCTTAATCAGTTTTTAACCTATTTTATtatagtttttgg
acctacctggaggtcctataaattaacctttgttcgtccgtccgtccgtc
tgtccgtccgtctgttaccagcttttctcgagattggctcat

Coding sequence (CDS) from alignment at sc0000141:268976..270417

>TCONS_00012232 ID=TCONS_00012232|Name=TCONS_00012232|organism=Clytia hemisphaerica|type=CDS|length=1041bp|location=Sequence derived from alignment at sc0000141:268976..270417 (Clytia hemisphaerica)
ATGGCTCTTATTGAAATTCTTGTTTCTAATTCAGatcaagataaaaaaat
gtCATATAAAAGAAGAAGTAGATCTAGATCTCGAAGTCCTATTCGGCATG
GAAATCGAGACAGAAGCTACAGCCCAAAATATGATCGCAGCAGATCCAAA
AGAGACCGATCAAGAAGTCCTGATTCTCAAAAATCatataaaagaaataa
agacAGATCTGATTGGGGAAGAAACAAAGACAGATCTGATTGGGGAAGAA
ACAAAGACAGATCTGATTGGGGAAGAAACAAAGATAGATCTGATTGGGGA
AGAAACAATATGGACACAGAGATATGGAGAGCTGACAGGGATCGAATAGC
TGAAGATGGAGTATCTTATGTTTGGGGTTTCTCACCTAGAGCTCCAAGTA
TAGATTCAGAAATGAATGATATTAAAGACTCGTCTGATGAAATGAGTGGA
AGGGAATcaaaagataaacacaaaaagaagaaaaagaaatcttcaaagga
caaaaaaagtaaaaagaaaaagaaacatggtaaacataagaaaatgaaaa
agaaaaagtcgtCCACCAAAAGTAGTGACAGCGAAAGTTCTGATTCTGAG
AAATCTGTTAAAGATAATGCAGAAGATGAATGGACTGAAAGAGCCACTTC
AGCCAACGTAAATATTGGTCCCCTACCATTATCTATTGCAGAAATTGAAC
AAACTACTTCAAAAGACTATGGTGAAGCTTTGCTTCCTGGTGAAGGTGAA
GCTATGGCCAAGTTCGTACAGGAAGGAAAACGTATCCCCAGAAGAGGAGA
AATTGGTTTGACAAGTGAAGAGATTTCTACTTATGAAGATGCTGGCTATG
TTATGAGTGGTAGTCGTCATCGACGTATGGAAGCGGTCCgtttaagaaaa
gaaaatcaagtatACAGTGCAGATGAGAAACGTGCTTTAGCTATGTACAA
TAGAGAGGAAAAAGCTAAACGTGAAAATAAAGTACTTGCTGACTTTAGAG
AATTGGTTCAAATTAAAAAAGCTTCTGCAAAGAAAAAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006885XLOC_006885Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012232-proteinTCONS_00012232-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012232-exon-sc0000141-1491911889:268976..270417TCONS_00012232-exon-sc0000141-1491911889:268976..270417Clytia hemisphaericaexon
TCONS_00012232-exon-sc0000141-1510915933:268976..270417TCONS_00012232-exon-sc0000141-1510915933:268976..270417Clytia hemisphaericaexon
TCONS_00012232-exon-sc0000141-1575043694:268976..270417TCONS_00012232-exon-sc0000141-1575043694:268976..270417Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000141supercontigsc0000141:268976..270417 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
36.5202	33.3754	11.8169	9.07125	44.2375	32.0938	29.9308	30.6702	19.3475	19.3978	14.7842	11.7524	10.7755	11.3327	11.9032	13.0663	17.384	15.1713	7.08111	9.01009	12.0155	9.90155	44.5622	38.6243	17.2983	16.2885	19.0844	16.7238	31.7364	34.5821
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR009269NKAP
Vocabulary: Biological Process
TermDefinition
GO:0045892negative regulation of transcription, DNA-templated
GO:0007219Notch signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0003682chromatin binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045892 negative regulation of transcription, DNA-templated
biological_process GO:0007219 Notch signaling pathway
molecular_function GO:0003682 chromatin binding
Blast
[Close]
BLAST of TCONS_00012232 vs. Swiss-Prot (Human)
Match: NKAPL (NKAP-like protein OS=Homo sapiens GN=NKAPL PE=2 SV=3)

HSP 1 Score: 166.777 bits (421), Expect = 6.280e-46
Identity = 84/133 (63.16%), Postives = 101/133 (75.94%), Query Frame = -1 
Query:  168 AEDEWTERATSANVN--IGPLPLSIAEIEQTTSKDYGEALLPGEGEAMAKFVQEGKRIPRRGEIGLTSEEISTYEDAGYVMSGSRHRRMEAVRLRKENQVYSADEKRALAMYNREEKAKRENKVLADFRELVQ 560
            +E  W E+   A+    IGP    I   +      YG ALLPGEG AMA++V+ GKRIPRRGEIGLTSEEI ++E +GYVMSGSRHRRMEAVRLRKENQ+YSADEKRALA +N+EE+ KRE+K+LA FRE+V 
Sbjct:  261 SEATWMEQPNVADTMDLIGPEAPIIHTSQDEKPLKYGHALLPGEGAAMAEYVKAGKRIPRRGEIGLTSEEIGSFECSGYVMSGSRHRRMEAVRLRKENQIYSADEKRALASFNQEERRKRESKILASFREMVH 393
The following BLAST results are available for this feature:
BLAST of TCONS_00012232 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NKAPL6.280e-4663.16NKAP-like protein OS=Homo sapiens GN=NKAPL PE=2 SV... [more]
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