TCONS_00012232-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00012232-protein
Unique NameTCONS_00012232-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length346

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00012232-protein ID=TCONS_00012232-protein|Name=TCONS_00012232-protein|organism=Clytia hemisphaerica|type=polypeptide|length=346bp
MALIEILVSNSDQDKKMSYKRRSRSRSRSPIRHGNRDRSYSPKYDRSRSK
RDRSRSPDSQKSYKRNKDRSDWGRNKDRSDWGRNKDRSDWGRNKDRSDWG
RNNMDTEIWRADRDRIAEDGVSYVWGFSPRAPSIDSEMNDIKDSSDEMSG
RESKDKHKKKKKKSSKDKKSKKKKKHGKHKKMKKKKSSTKSSDSESSDSE
KSVKDNAEDEWTERATSANVNIGPLPLSIAEIEQTTSKDYGEALLPGEGE
AMAKFVQEGKRIPRRGEIGLTSEEISTYEDAGYVMSGSRHRRMEAVRLRK
ENQVYSADEKRALAMYNREEKAKRENKVLADFRELVQIKKASAKKK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_006885XLOC_006885Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00012232TCONS_00012232Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009269NKAP
Vocabulary: Biological Process
TermDefinition
GO:0045892negative regulation of transcription, DNA-templated
GO:0007219Notch signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0003682chromatin binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045892 negative regulation of transcription, DNA-templated
biological_process GO:0007219 Notch signaling pathway
molecular_function GO:0003682 chromatin binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009269NF-kappa-B-activating proteinPFAMPF06047SynMuv_productcoord: 238..337
e-value: 3.4E-50
score: 168.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..223

Blast
[Close]
BLAST of TCONS_00012232-protein vs. Swiss-Prot (Human)
Match: NKAPL (NKAP-like protein OS=Homo sapiens GN=NKAPL PE=2 SV=3)

HSP 1 Score: 181.415 bits (459), Expect = 9.350e-54
Identity = 121/275 (44.00%), Postives = 159/275 (57.82%), Query Frame = 0 
Query:  112 DRDRIAEDGVSYVWGFSPRAPSIDSEMNDIKDSSDEMSGRESK------DKHKKKK-KKSSKDKKSKKKKKHGKHKKMKKKKSST--------------------------------------KSSDSESSDSEKSVKDNAEDEWTERATSANVN--IGPLPLSIAEIEQTTSKDYGEALLPGEGEAMAKFVQEGKRIPRRGEIGLTSEEISTYEDAGYVMSGSRHRRMEAVRLRKENQVYSADEKRALAMYNREEKAKRENKVLADFRELVQIK 339
            +R+RI E G   VWG SP+ P +DS+ +   +  +E++ ++S       ++H+KKK  +S   KK K K    KH+K     S++                                      +SSDS   DSE+   D +E  W E+   A+    IGP    I   +      YG ALLPGEG AMA++V+ GKRIPRRGEIGLTSEEI ++E +GYVMSGSRHRRMEAVRLRKENQ+YSADEKRALA +N+EE+ KRE+K+LA FRE+V  K
Sbjct:  124 ERERIGELGAPEVWGPSPKFPQLDSDEHTPVEDEEEVTHQKSSSSDSNSEEHRKKKTSRSRNKKKRKNKSSKRKHRKYSDSDSNSESDTNSDSDDDKKRVKAKKKKKKKKHKTKKKKNKKTKKESSDSSCKDSEE---DLSEATWMEQPNVADTMDLIGPEAPIIHTSQDEKPLKYGHALLPGEGAAMAEYVKAGKRIPRRGEIGLTSEEIGSFECSGYVMSGSRHRRMEAVRLRKENQIYSADEKRALASFNQEERRKRESKILASFREMVHKK 395
The following BLAST results are available for this feature:
BLAST of TCONS_00012232-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NKAPL9.350e-5444.00NKAP-like protein OS=Homo sapiens GN=NKAPL PE=2 SV... [more]
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