TCONS_00012147 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012147
Unique NameTCONS_00012147
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1030

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012147 ID=TCONS_00012147|Name=TCONS_00012147|organism=Clytia hemisphaerica|type=transcript|length=1030bp
TGCTGTCTCCCAAAAGTATCCGAAAGAtgcatcaaaattgaaaaaactct
ACAATATAACTACATAAGATTAAAAATGTTCTGTAAAAAATTGTATAATT
TCTCTAGCATTCATTCTATTGTCTTTACATTGGTCCCAACAGCCAGTCAT
AACCTGTGAATAGAGCTTTTCCGTATCTTCAGGTATGCACGGTCTCAAAT
TATACGCGACCACTTTAAAAATGATGACCTGATGATTTTCATTACCGTAA
GGTCTTTCTCTGGTTGCCATTTGCCATAAACATATCCCAAAAGAATAGAT
ATCTGCTTTATCCGTCGCTGGCTCCCCGCGTAGTAATTCGGGCGCGCGGT
AAGAATAAGTACCCGTCAAGCTTGTCTTTGTCGGAGTTGTTGGAGATGAG
ATCTCAGATAGGTCTTTACAGCACCCGAAATCAGCGATTTTGCATTGATC
TGTAGCCTGGGAGACGAGAATGTTTAACGGCTTCAAGTCTAAATGTACAA
TGTTTTTCTTGTGAGCGTATGCAAGCCCGGATGCGATTTGTTTTGCAAAT
TTGATTCTTCGTCTCGACAAAACGGTTTCGTTTTCATCGTCCAAAATTGA
TTGAAGAGTTCTGGCGTTCAAATATTCCATTAAGATATAATGTGATTGGT
TTTTAAGAAATGTACAAAATGTTCTGACTATGTTTCTATGTTGGAGTCGA
ATAGCCATGTTCTCGGATGTAAAACTTTCTTGAGCGGCCCGCGCGTTACG
AGCGGTAATATGAAAACGTTTGAGTGCGTATTTTTGTCCCTTTATTAAAC
ATTCATGAACAGTCCCAAAACCACCTGATCCCAAGTAACGACCTAGTTCA
ATTTcgtcaaaatgaaaatcttcttttttcttggagcataacttttgaaa
ataatctaaacGATGCTTGAATAATAAGTTGGTGTTTGATTGATGACTTG
ATATAGTTTTCGACATTCTGTGCCCAGCGGTTATTTTGTAACTTCTGATA
ACCTTGTCCAGCGGTTTGTTttgctacttt
Run BLAST on NCBI

protein sequence of protein kinase Mos2

>TCONS_00012147-protein ID=TCONS_00012147-protein|Name=protein kinase Mos2|organism=Clytia hemisphaerica|type=polypeptide|length=298bp
MSKTISSHQSNTNLLFKHRLDYFQKLCSKKKEDFHFDEIELGRYLGSGGF
GTVHECLIKGQKYALKRFHITARNARAAQESFTSENMAIRLQHRNIVRTF
CTFLKNQSHYILMEYLNARTLQSILDDENETVLSRRRIKFAKQIASGLAY
AHKKNIVHLDLKPLNILVSQATDQCKIADFGCCKDLSEISSPTTPTKTSL
TGTYSYRAPELLRGEPATDKADIYSFGICLWQMATRERPYGNENHQVIIF
KVVAYNLRPCIPEDTEKLYSQVMTGCWDQCKDNRMNAREIIQFFTEHF
Run BLAST on NCBI

transcript from alignment at sc0000137:254119..255148

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012147 ID=TCONS_00012147|Name=TCONS_00012147|organism=Clytia hemisphaerica|type=transcript|length=1030bp|location=Sequence derived from alignment at sc0000137:254119..255148 (Clytia hemisphaerica)
aaagtagcaaAACAAACCGCTGGACAAGGTTATCAGAAGTTACAAAATAA
CCGCTGGGCACAGAATGTCGAAAACTATATCAAGTCATCAATCAAACACC
AACTTATTATTCAAGCATCgtttagattattttcaaaagttatgctccaa
gaaaaaagaagattttcattttgacgAAATTGAACTAGGTCGTTACTTGG
GATCAGGTGGTTTTGGGACTGTTCATGAATGTTTAATAAAGGGACAAAAA
TACGCACTCAAACGTTTTCATATTACCGCTCGTAACGCGCGGGCCGCTCA
AGAAAGTTTTACATCCGAGAACATGGCTATTCGACTCCAACATAGAAACA
TAGTCAGAACATTTTGTACATTTCTTAAAAACCAATCACATTATATCTTA
ATGGAATATTTGAACGCCAGAACTCTTCAATCAATTTTGGACGATGAAAA
CGAAACCGTTTTGTCGAGACGAAGAATCAAATTTGCAAAACAAATCGCAT
CCGGGCTTGCATACGCTCACAAGAAAAACATTGTACATTTAGACTTGAAG
CCGTTAAACATTCTCGTCTCCCAGGCTACAGATCAATGCAAAATCGCTGA
TTTCGGGTGCTGTAAAGACCTATCTGAGATCTCATCTCCAACAACTCCGA
CAAAGACAAGCTTGACGGGTACTTATTCTTACCGCGCGCCCGAATTACTA
CGCGGGGAGCCAGCGACGGATAAAGCAGATATCTATTCTTTTGGGATATG
TTTATGGCAAATGGCAACCAGAGAAAGACCTTACGGTAATGAAAATCATC
AGGTCATCATTTTTAAAGTGGTCGCGTATAATTTGAGACCGTGCATACCT
GAAGATACGGAAAAGCTCTATTCACAGGTTATGACTGGCTGTTGGGACCA
ATGTAAAGACAATAGAATGAATGCTAGAGAAATTATACAATTTTTTACAG
AACATTTTTAATCTTATGTAGTTATATTGTagagttttttcaattttgat
gcaTCTTTCGGATACTTTTGGGAGACAGCA

Coding sequence (CDS) from alignment at sc0000137:254119..255148

>TCONS_00012147 ID=TCONS_00012147|Name=TCONS_00012147|organism=Clytia hemisphaerica|type=CDS|length=897bp|location=Sequence derived from alignment at sc0000137:254119..255148 (Clytia hemisphaerica)
ATGTCGAAAACTATATCAAGTCATCAATCAAACACCAACTTATTATTCAA
GCATCgtttagattattttcaaaagttatgctccaagaaaaaagaagatt
ttcattttgacgAAATTGAACTAGGTCGTTACTTGGGATCAGGTGGTTTT
GGGACTGTTCATGAATGTTTAATAAAGGGACAAAAATACGCACTCAAACG
TTTTCATATTACCGCTCGTAACGCGCGGGCCGCTCAAGAAAGTTTTACAT
CCGAGAACATGGCTATTCGACTCCAACATAGAAACATAGTCAGAACATTT
TGTACATTTCTTAAAAACCAATCACATTATATCTTAATGGAATATTTGAA
CGCCAGAACTCTTCAATCAATTTTGGACGATGAAAACGAAACCGTTTTGT
CGAGACGAAGAATCAAATTTGCAAAACAAATCGCATCCGGGCTTGCATAC
GCTCACAAGAAAAACATTGTACATTTAGACTTGAAGCCGTTAAACATTCT
CGTCTCCCAGGCTACAGATCAATGCAAAATCGCTGATTTCGGGTGCTGTA
AAGACCTATCTGAGATCTCATCTCCAACAACTCCGACAAAGACAAGCTTG
ACGGGTACTTATTCTTACCGCGCGCCCGAATTACTACGCGGGGAGCCAGC
GACGGATAAAGCAGATATCTATTCTTTTGGGATATGTTTATGGCAAATGG
CAACCAGAGAAAGACCTTACGGTAATGAAAATCATCAGGTCATCATTTTT
AAAGTGGTCGCGTATAATTTGAGACCGTGCATACCTGAAGATACGGAAAA
GCTCTATTCACAGGTTATGACTGGCTGTTGGGACCAATGTAAAGACAATA
GAATGAATGCTAGAGAAATTATACAATTTTTTACAGAACATTTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006835XLOC_006835Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
protein kinase Mos2TCONS_00012147-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012147-exon-sc0000137-1491911889:254119..255148TCONS_00012147-exon-sc0000137-1491911889:254119..255148Clytia hemisphaericaexon
TCONS_00012147-exon-sc0000137-1510915933:254119..255148TCONS_00012147-exon-sc0000137-1510915933:254119..255148Clytia hemisphaericaexon
TCONS_00012147-exon-sc0000137-1575043694:254119..255148TCONS_00012147-exon-sc0000137-1575043694:254119..255148Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000137supercontigsc0000137:254119..255148 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.30249	0.126418	0.733917	0.670155	127.797	103.474	23.8895	25.4337	3.05883	4.55565	2.53926	2.33114	0.0862185	0.0596925	1.22688	0.895311	0.129759	0.166248	0.229681	0.0480689	0	0	0	0	0.139187	0	0.17776	0	0.0479629	0.0977332
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000719Prot_kinase_dom
IPR008271Ser/Thr_kinase_AS
IPR017441Protein_kinase_ATP_BS
IPR011009Kinase-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004672protein kinase activity
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0006468protein phosphorylation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006468 protein phosphorylation
molecular_function GO:0005524 ATP binding
molecular_function GO:0004672 protein kinase activity
Blast
[Close]
BLAST of TCONS_00012147 vs. Swiss-Prot (Human)
Match: MOS (Proto-oncogene serine/threonine-protein kinase mos OS=Homo sapiens GN=MOS PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.722e-42
Identity = 103/287 (35.89%), Postives = 156/287 (54.36%), Query Frame = -2 
Query:   79 FDEIELGRYLGSGGFGTVHECLIKGQKYALKRFHITARNARAAQESFTSENMAIRLQHRNIVRTFCTFLK-----NQSHYILMEYLNARTLQSIL--------DDENET------VLSRRR-IKFAKQIASGLAYAHKKNIVHLDLKPLNILVSQATDQCKIADFGCCKDLXXXXXXXXXXXXXXXXXXSYRAPELLRGEPATDKADIYSFGICLWQMATRERPYGNENHQVIIFKVVAYNLRPCIP----EDT--EKLYSQVMTGCWDQCKDNRMNAREIIQFFTE 861
            ++++ L + LG+GGFG+V++   +G   A+K+ +   +N  A++ SF +E    RL+H NIVR      +     N    I+ME+    TL  ++         D  E        LS  + +K++  + +GL + H ++IVHLDLKP NIL+S+  D CKI+DFGC + L ++    TP+         +RAPELL+GE  T KADIYSF I LWQM T++ PY  E  Q I++ VVAY+LRP +     ED+   +    V+  CW      R +AR ++   T 
Sbjct:   57 WEQVCLLQRLGAGGFGSVYKATYRGVPVAIKQVNKCTKNRLASRRSFWAELNVARLRHDNIVRVVAASTRTPAGSNSLGTIIMEFGGNVTLHQVIYGAAGHPEGDAGEPHCRTGGQLSLGKCLKYSLDVVNGLLFLHSQSIVHLDLKPANILISE-QDVCKISDFGCSEKLEDLLCFQTPSYPLGGTYT-HRAPELLKGEGVTPKADIYSFAITLWQMTTKQAPYSGE-RQHILYAVVAYDLRPSLSAAVFEDSLPGQRLGDVIQRCWRPSAAQRPSARLLLVDLTS 340
The following BLAST results are available for this feature:
BLAST of TCONS_00012147 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MOS2.722e-4235.89Proto-oncogene serine/threonine-protein kinase mos... [more]
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