TCONS_00012116 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012116
Unique NameTCONS_00012116
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length868

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012116 ID=TCONS_00012116|Name=TCONS_00012116|organism=Clytia hemisphaerica|type=transcript|length=868bp
GTAGAAAGACAATTTTTTTAGCATAATATTCATTATTAAGTAAACTAGAT
AATTAGAATACCAAAAAGAATGGAGCAAAATCAAATTCCAGATGTTTCTA
AAGACGCTGTTCTTGTGCAGAGTGTCAAAATGCCCGATGATGCACCACAA
GTGAAAGGCTATGATTTCAACGAAGGATTGAATTACGAAAAGTTAATGAA
ATCGTACTATTCCACTGGTTTTCAAGCGTTACATTTGGGACAGGCTTTTG
AGGAGATCAATAATATGCTAAAATGTAGAGATCTTCCTCTTGAGAATGTT
AGTCAGCATACAGATGAAAAGTTGCGTCCCAAGACAAATTGCACCATTTT
CTTGGGTTATACATCGAATATGGCCTCAGCAGGGATCAGAGATGTGATCC
GTTTTTTAGTGCAGCACAAGCTGGTTGATGTAGTTGTCACTACAGCAGGA
GGGATAGAGGAAGATTTCATTAAGTGTATGGCACCTACATATCTTGGTGA
TTTTAAATTGAAAGGTGCTACTTTACGTAAACAAGGCTTGAATCGTACTG
GTAATCTGATTGTTCCCAATGATAATTACTGCACTTTTGAAAATTGGTTT
CAACCTATATTGGATCAAATGCTAAAAGAGCAAAATGAGAATGGTACTAA
CTGGACACCAGCAAAATGAGAATGGTACTAACTGGACACCGTCAAAAATG
ATTGCACGAATGGGTAAAGAAATTGATAATGAAGAGTCCATTTACTATTG
GGCATACAAGAACAGTATTCCAGTTTTCAGCCCAGCTATAACTGACGGTT
CAATTGGTGATAATATTTATTTCCATAGTTTCCGTAAACCTGGATTAAGA
ATTGACATTGCAGAGGAC
Run BLAST on NCBI

transcript from alignment at sc0000137:102095..103589-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012116 ID=TCONS_00012116|Name=TCONS_00012116|organism=Clytia hemisphaerica|type=transcript|length=1495bp|location=Sequence derived from alignment at sc0000137:102095..103589- (Clytia hemisphaerica)
GTAGAAAGACAATTTTTTTAGCATAATATTCATTATTAAGTAAACTAGAT
AATTAGAATACCAAAAAGAATGGAGCAAAATCAAATTCCAGATGTTTCTA
AAGACGCTGTTCTTGTGCAGAGTGTCAAAATGCCCGATGATGCACCACAA
GTGAAAGGCTATGATTTCAACGAAGGATTGAATTACGAAAAGTTAATGAA
ATCGTACTATTCCACTGGTTTTCAAGCGTTACATTTGGGACAGGCTTTTG
AGGAGATCAATAATATGCTAAAATGTAGAGATCTTCCTCTTGAGAATGTT
AGTCAGCATACAGATGAAAAGTTGCGTCCCAAGACAAATTGCACCATTTT
CTTGGGTTATACATCGAATATGGCCTCAGCAGGGATCAGAGATGTGATCC
GTTTTTTAGTGCAGCACAAGCTGGTTGATGTAGTTGTCACTACAGCAGGA
GGGATAGAGGAAGATTTCATTAAGTGTATGGCACCTACATATCTTGGTGA
TTTTAAATTGAAAGGTGCTACTTTACGTAAACAAGGCTTGAATCGTACTG
GTAATCTGATTGTTCCCAATGATAATTACTGCACTTTTGAAAATTGGTTT
CAACCTATATTGGATCAAATGCTAAAAGAGCAAAATGAGAATGGTACTAA
CTGGACACCGTCAAAAATGATTGCACGAATGGGTAAAGAAATTGATAATG
AAGAGTCCATTTACTATTGGGCATACAAGAACAGTATTCCAGTTTTCAGC
CCAGCTATAACTGACGGTTCAATTGGTGATAATATTTATTTCCATAGTTT
CCGTAAACCTGGATTAAGAATTGACATTGCAGAGGATATTACCTACATTA
ATAATTTGTCAGTTAAATCTAAAAATACTGGGCAGGTCATTATTGGTGGC
GGTTTGATCAAACATCATATCTGTAATGCCAATTTGATGCGTAATGGTGC
AGATTACAGTGTTTATGTTAATACAGCGGGAGAATTTGATGGCTCAGATG
CAGGGGCCGCACCAGATGAGGCTGTTTCTTGGGGAAAAATTAAAATGACT
GCAAAACCAGTCAAAGTTGTCGCAGACGCTACTCTTGTATTTCCATTGAT
TGTAGCGGAGACATTTGCTAAATATCACTATGCAAAGAAAGAACAACAGA
TGTAAAGCTGGTCGGCTTTTCGATTTTGTTCTTTCTGTNCAAGGCTTGAA
TCGTACTGGTAATCTGATTGTTCCCAATGATAATTACTGCACTTTTGAAA
ATTGGTTTCAACCTATATTGGATCAAATGCTAAAAGAGCAAAATGAGAAT
GGTACTAACTGGACACCGTCAAAAATGATTGCACGAATGGGTAAAGAAAT
TGATAATGAAGAGTCCATTTACTATTGGGCATACAAGAACAGTATTCCAG
TTTTCAGCCCAGCTATAACTGACGGTTCAATTGGTGATAATATTTATTTC
CATAGTTTCCGTAAACCTGGATTAAGAATTGACATTGCAGAGGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006812XLOC_006812Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012116-exon-sc0000137-1575043694:102931..103589TCONS_00012116-exon-sc0000137-1575043694:102931..103589Clytia hemisphaericaexon
TCONS_00012116-exon-sc0000137-1575043694:102095..102303TCONS_00012116-exon-sc0000137-1575043694:102095..102303Clytia hemisphaericaexon
TCONS_00012116-exon-sc0000137-1510915933:102931..103589TCONS_00012116-exon-sc0000137-1510915933:102931..103589Clytia hemisphaericaexon
TCONS_00012116-exon-sc0000137-1510915933:102095..102303TCONS_00012116-exon-sc0000137-1510915933:102095..102303Clytia hemisphaericaexon
TCONS_00012116-exon-sc0000137-1491911889:102931..103589TCONS_00012116-exon-sc0000137-1491911889:102931..103589Clytia hemisphaericaexon
TCONS_00012116-exon-sc0000137-1491911889:102095..102303TCONS_00012116-exon-sc0000137-1491911889:102095..102303Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000137supercontigsc0000137:102095..103589 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.62842e-09	0	1.36963	0	0.846998	3.42059	3.82918	3.77934	9.01368	5.08667	8.62087	3.21028	6.15942	2.35345	7.88155	6.07512	1.87797	9.46454	1.30022	4.40243	2.36048e-06	0	0.95051	0.506192	1.89729	0.330726	0.630313	0	1.30799e-09	0
Blast
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BLAST of TCONS_00012116 vs. Swiss-Prot (Human)
Match: DHYS (Deoxyhypusine synthase OS=Homo sapiens GN=DHPS PE=1 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 1.857e-77
Identity = 109/200 (54.50%), Postives = 151/200 (75.50%), Query Frame = 1 
Query:   76 QNQIPDVSKDAVLVQSVKMPDDAPQVKGYDFNEGLNYEKLMKSYYSTGFQALHLGQAFEEINNMLKCRDLPL-ENVSQHTD--EKLRPKTNCTIFLGYTSNMASAGIRDVIRFLVQHKLVDVVVTTAGGIEEDFIKCMAPTYLGDFKLKGATLRKQGLNRTGNLIVPNDNYCTFENWFQPILDQMLKEQNENGTNWTPAK 666
            + + P  +  AVL  S  +P ++ QV+GYDFN G+NY  L++++ +TGFQA + G+A +++N M++ +  PL ++  QH D  +  RP T+CTIFLGYTSN+ S+GIR+ IR+LVQH +VDV+VTTAGG+EED IKC+APTYLG+F L+G  LR+ G+NR GNL+VPN+NYC FE+W  PILDQM+ EQN  G  WTP+K
Sbjct:    6 EREAPAGALAAVLKHSSTLPPESTQVRGYDFNRGVNYRALLEAFGTTGFQATNFGRAVQQVNAMIEKKLEPLSQDEDQHADLTQSRRPLTSCTIFLGYTSNLISSGIRETIRYLVQHNMVDVLVTTAGGVEEDLIKCLAPTYLGEFSLRGKELRENGINRIGNLLVPNENYCKFEDWLMPILDQMVMEQNTEGVKWTPSK 205

HSP 2 Score: 115.161 bits (287), Expect = 3.659e-29
Identity = 49/70 (70.00%), Postives = 59/70 (84.29%), Query Frame = 2 
Query:  659 QQNENGTNWTPSKMIARMGKEIDNEESIYYWAYKNSIPVFSPAITDGSIGDNIYFHSFRKPGLRIDIAED 868
            +QN  G  WTPSKMIAR+GKEI+N ES+YYWA KN IPVFSPA+TDGS+GD I+FHS++ PGL +DI ED
Sbjct:  193 EQNTEGVKWTPSKMIARLGKEINNPESVYYWAQKNHIPVFSPALTDGSLGDMIFFHSYKNPGLVLDIVED 262
The following BLAST results are available for this feature:
BLAST of TCONS_00012116 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DHYS1.857e-7754.50Deoxyhypusine synthase OS=Homo sapiens GN=DHPS PE=... [more]
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