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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012110 ID=TCONS_00012110|Name=TCONS_00012110|organism=Clytia hemisphaerica|type=transcript|length=3895bpRun BLAST on NCBI protein sequence of TCONS_00012110-protein >TCONS_00012110-protein ID=TCONS_00012110-protein|Name=TCONS_00012110-protein|organism=Clytia hemisphaerica|type=polypeptide|length=837bp MSDEDYAERRRKQRRNSRHSEERERDERKEKKRYEEEKEEQRRNEKKKSKRun BLAST on NCBI transcript from alignment at sc0000137:66496..91308- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00012110 ID=TCONS_00012110|Name=TCONS_00012110|organism=Clytia hemisphaerica|type=transcript|length=24813bp|location=Sequence derived from alignment at sc0000137:66496..91308- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000137:66496..91308- >TCONS_00012110 ID=TCONS_00012110|Name=TCONS_00012110|organism=Clytia hemisphaerica|type=CDS|length=12570bp|location=Sequence derived from alignment at sc0000137:66496..91308- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00012110 vs. Swiss-Prot (Human)
Match: SRRM2 (Serine/arginine repetitive matrix protein 2 OS=Homo sapiens GN=SRRM2 PE=1 SV=2) HSP 1 Score: 105.145 bits (261), Expect = 1.814e-22 Identity = 71/156 (45.51%), Postives = 104/156 (66.67%), Query Frame = 1
Query: 58 MYNGIGVQTTRGTGTNGYVTRNLSHINHSRKDNKPTYDYNDTSLLGGFESSLVKKPNKDILDHNRKRNIEVKCXXXXXXXXXXXXXXXXXXXTKVSEYRKELMDK----AGLSKQEEVQPSMSGSHEVAEANEAKNSKMRDAFGIKNDFTEGSSFN 513
MYNGIG+ T RG+GTNGYV RNLS + R+ +P DY L E++LVK+PN DILDH RKR +E++CLEL+E +EE+G + E KV+ +R L++K G + +P+++ +H++AE NE KN ++R AFGI + + +GSSF+
Sbjct: 1 MYNGIGLPTPRGSGTNGYVQRNLSLV-RGRRGERP--DYKGEEELRRLEAALVKRPNPDILDHERKRRVELRCLELEEMMEEQGYEEQQIQE-KVATFRLMLLEKDVNPGGKEETPGQRPAVTETHQLAELNEKKNERLRAAFGISDSYVDGSSFD 152 The following BLAST results are available for this feature:
BLAST of TCONS_00012110 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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