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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012038 ID=TCONS_00012038|Name=TCONS_00012038|organism=Clytia hemisphaerica|type=transcript|length=478bp
GCTGTACCGTAACCATCACAAATCTTTCGAGGTTTGGCGTAAAAGCGAGA
TGAATAACTTGATATTACCAAACGATGGAAAGGAAGAAACGCATTCGAAA
CTTTGGACCATCGATATCATATATTTTATGATCAGCACCAGGTAATGGTT
GGCAAAATCCCAAACCACCAGGAACTAATGAAGACGGAAGAGGGTATTGG
TGTTGGGAAGCAAGGAGGTTAAAGAACCACTTGCAACAGCAGGACGACGA
TCTTGACAACAATTTGTATGAAATGGCTGAAATAGTAATGGGATTGGATT
ATTATGATGGGATGGAGTTGTTGGAACAACTGAGAAGTGAACACTCTTTG
GATGACGTAATCAAGATGACATCAAATATGGaacgatgaaaaagaaaatg
agaacGCTAATTTGTAAATAATCACCAAATGAAAATGCAGGCATCTTTTT
CCTTAAACAAAAGTTTCTTCCATTCGTC Run BLAST on NCBI transcript from alignment at sc0000136:453062..458511+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012038 ID=TCONS_00012038|Name=TCONS_00012038|organism=Clytia hemisphaerica|type=transcript|length=5450bp|location=Sequence derived from alignment at sc0000136:453062..458511+ (Clytia hemisphaerica)
GCTGTACCGTAACCATCACAAATCTTTCGAGGTTTGGCGTAAAAGCGAGA
TGAATAACTTGATATTACCAAACGATGGAAAGGAAGAAACGCATTCGAAA
CTTTGGACCATCGATATCATATATTTTATGATCAGGTAAATTGTCTTCAG
TTATGtggggaaagtagaaaatattcTATTCTTGTAAAGATAAATCCTAT
CTTTGCTAATTGAACATAATAGTCATTATCGGGGTTATTTATTTCTATTA
GGCAATATCAGATATCTAATACGGTCCTAATACTGTgatgaaagaaaatt
ctttaaaaaacatCTCCCAATATCTGGATCGATGCGTTAGTTTTATTTCA
CTGAGTTGTTTATACGCTTCATATGGCCATGGCCATTCACTAGGTAAATC
ATAGGACTATTGTCTCGCACAACGACTTTCTATAGCTAGCTCTCCATCCA
TACATATGCTTCGCATGATGGGATGCTTTCAAACGTATATGTTTTTAGAT
TCACATAAGAGATTACGACAATGAagaataaatcttttttcttgcCACAG
AACTGCAAATATCGTTACAGCACCAGGTAATGGTTGGCAAAATCCCAAAC
CACCAGGAACTAATGAAGACGGAAGAGGGTATTGGTGTTGGGAAGCAAGG
TAGGATGTTGATATTTTGAAGGATTTATTTCCGCGCGTTAAGGAATTATG
AACGTTGCGATGGGCCCATTTTTTCGGCACGGAATTAATTTGtcgaaatt
ttgttgaaatAAATCTGTTCGAAAACTCTCCAAAATTAAACCACTTTAAA
GACATTATTTATGTAACTAAGTTACTACCATTTGCTGACAcagtattttt
aaagaaaagaaagaacaactttTCCCCCCTTGGGCGCGTTTTTTGCTCTA
GCCGCAGGTGAGCATTAAAATGGGTGTTGGGGGGGACGGCGTTAAGATTC
CAAAAAAGTATTTCCCGATTCGGTTTCTATCGGATGTTCGGGAGAGCGGG
AAATCCGCTGAAGAAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNCATTGTTTTTGATTACCATATTTTTAGTGTAAA
AAGATAGCTGCAAGTGTAAATACTGGTATTAATTTATCTCACTTGCTAGT
TATCACTAAAAGAACACTAAAAGAACTGTGTTATATATCAGACAAGCACC
CCAGAGGTTACATGCGAGCTCCTTGTAACCTCTTGCTAAGCTTACTAATC
CTACTAATCCAACTAATCCTACTAATCCTACTAAAGAAATTCAACGGTAT
CAACTTATCTAACTTGCACATCCTGCAAAATCGATCATTCTTTGTGAGTC
AGTTTCACAACGACCACACCGCTAAAATCGTTTCCATCTTTTTGACAAGC
ATGCCTGCatataaagtttcaaaaactgtTTTGGGTTCTTTTAATCAAGC
CAACAGAGAGATGTTTGGTGAAACAGCCGGTACGCAATGTAGTGCTAACT
GCCTCTACGCTATATTCTGGTCCAATGTTAGACGTGTTTCTATTTGGAAA
ACTACTGACCTAGACAGAATTTTAATTGAAGGAGACAAATTATACAAACA
ATTAAATACAAATAGTTATTTATCGGTAGATGAAATGCCACATTTCATTG
AATCAAATGGTATTGTCACTGagcttcattttttaaattctgaaaatgga
CAAGCTAAATTGATCAATGACTATATCCTCTGCTTCAAATTCCTCTGAGC
ATGGCTCCGAATCCAGACTTTGACGCATTGATGATCATTGAAGGTTTTAC
TATAGCAATTATGAGAAGGCCTCAAGgatttttcctttttgattCGTATA
GTCGTAATGAATTTGGACTACTTGAACCACTTAATGGAAAGTCTTGTCTT
ATAAAGTTTGAAGAcatttttgaacttgaaaaatatattcaacattttta
tttaGAGGAAAATAACAAagataatttatttttccttaTTCAATTCATCA
AAGTAGGTGAACTAAAAGAAGATTTTAAAAAAGGTTCTTCAGCGAAGTTA
TTCTGGCTTTGTAAAGAAAAGTGCAATCAAGCGAAAAAATGATTCTGATA
AtggaaatgttttaaaaaagcgTCAAAAGACACGCCAGGAAAGCAATCAT
AAATTTTatgagaaaaacaaagaaattctgAAAGAAAACCAAAATAATTA
TCGTGCATTAAAATAAAGCAAGCCAAAAAGTCCGCCGCGTCCAAagcaat
gaaaaaataaaagacagCAATAAAATCTACCGTAaccaaaacaaggaaaa
aattaaaaaaagtaaaaaagcttACCGCACCCAGAATAGTGacaaaatta
aagaaaacaaaaaagcctATCGTGAACGAAACAAAGAAAAGCGAAAAGAA
ACAAATTCTCGACAGAAAGAGCGAATAGCAAAATTTAAAACTCTCGTAAA
TGAAGGTCCTTTTTATATGTGTGTTTGTTGCAACCAATGTCTCTATCGAC
AAACTGTTGTCAAATATACACCTGAAAACTACAATATGCCAGAAGAAAAC
TTTTGTTCTGAAGTAATTTCATTTTATGGCCAATTGTATATTtgtaagac
atgccataacaaACTTAAAAAAGACAACTTACCATGCCAGTCTGTCAAAA
ACAAGCTCGATATTTATGAATTACCAgctgaatttcatactcttcGCAGG
CTTGAGAAAGTTTTAATTTCTCAaagaattttattcaaaaaaattgctAT
CATGCCAAAAGGTCAGTTTCCTAAGTTAAAAGGGTCCATTTGTAATGTAC
CCATCGACATAGAAGATATTGCAAAAACTTTACCAAGAAGAACAAACGAT
AATGGCTTGGTCATTGTCAAATTAAAAAGGAAACTAGAATATAAAGGACA
TGTCATTTTTGAACCTATTAGACCTGATTTCATTCAAAGTGTGTTGATTT
ATTTGAAAGATATCAATCCTCTCTATCATGACATAGTGATCGATGTGAAT
AATATATCTGAGGACCGTATCATAGATGCCAATTCCGAAAGTACAGGTTC
TTGTGAAGGcagtgaaaatgatgaaattgacGATGACAAGGAAAGTGATA
AACTCGATGGAACGCAAGACAATGCTTCAAAATTAGAGGAACTTGAGACA
ACTGCAAACCCTCTTGATGCATATCGTTCTAGTGCGAATGAGACTACTCT
TATGCCTCACACTCCCTCTGAAACAGACATAGATAATGAAATTCTAACAT
TAGCCCCTGGTCAAGGGAAAAAGCCAATTTCCATTTTGAATGATGAGGAT
TGCGAAATGCTTGCTCACCCTCATTTATTTCCTAAAGGTAAATTTGGATA
CAAAGTTGAACGAGATGTTAAACTTAGTCCCTCCAAGTATTTTAACCAGC
GTCTTTTGAACTATACCCAAAAGTTTGCTTCCGACCCAGACTATATTTTT
TTTGCCAGTTTTGTGATTCAACAAGTCTCTTTAACCAGTCAGATAAATGT
TGCCATGAGAAAAGTTGCTGCTAATAATTTGAATGCTGGTATgttaagtc
aaaatttcaaagaaactgTGAAACAATTTATCGCAAATGACAAAGCCTTT
GCTTTTATGAGTACTGTCAAAGGAACTCCAGCCTATTGGAAGAAATTTCA
GCAAGAAGTTTTAGCAATGGTCAAACAATTAGGACCACcaactttctttt
ttactttgagCTGCGCAGACCTAAGATGGAATGAATTGATTTCTATTATT
TACAAACTCAAGGGTCAAGATGTCACTGATGAATTCATTAAGAATCTTTC
ATATCATGAAAGATGTGATTTGTTGAATAGCAATCCTGTACTTGTAGCAA
GGCATTTTCAATATAGAGTTGAAgtgttttttaaaacaatagtTTTGAAC
GGCCCACTTGGTAAAACAACTTTTTACGCTATTCGTGTTGAATTTCAAGT
GCGTGGCAGCCCTCACATCCATTCTTTTCTTTGGATCTTAAATGCTCCTA
CATTAACTCAGGAAACTAAACATGAATACATTGAATTTGTTGATAAAATA
ATCAAGGTTTATTTACCATCGCAGCAAGAAGATCCTGAATTATTCAATTT
AGTGAAAACCTATCAGTTACACCGACATTCAAAAACATGTCGCAAGTACA
AAAATACACCTTGCAGATTtcattttgggaaatttttttctgaaaaaacg
aTAGTGTCAGAGCCCTTGCCACAAGAGTTACCACATGAGCAAAAAGAATC
CATATTGACACTAAGAAAAGAATTATTAGTCAAAGTAAAGACTTATATCA
ACGAGAACCTCAATCCAagtaaaagaaacttttttgNAATCCCCTTTTTG
CATTCCATTTCCGACCTGTTTATTTTATCTAATCCTTGCATCTTTCTCAG
CTTACGGCtagagcttccagcgcagctggtttattgattctgctttgtca
gcacaGCGCCTCCTttcaatacatgtttttttaaaagcattgcacttata
agcatttCTAGGCTCAGGTATGGGGAAAATTAAGTATATGCTAAGCATTA
CCTCGAGCCTATAAAGTATAAGCTACTTTGTAGTATGGATATAAGCAGTA
TTATAGTAGTATAGCAGTATATAAgcagtattaagtattaggatataagc
atccctcaagcatttttcagccttattaaactttcgacctaagcatctct
gagcctgttttcggatttttatatgcttgtaaaaaaacatctaatatcat
aaaatatatttcataagATATTTTATTCCCTTCCAGGAGGTTAAAGAACC
ACTTGCAACAGCAGGACGACGATCTTGACAACAATTTGTATGAAATGGCT
GAAATAGTAATGGGATTGGATTATTATGATGGGATGGAGTTGTTGGAACA
ACTGAGAAGTGAACACTCTTTGGATGACGTAATCAAGATGACATCAAATA
TGGaacgatgaaaaagaaaatgagaacGCTAATTTGTAAATAATCACCAA
ATGAAAATGCAGGCATCTTTTTCCTTAAACAAAAGTTTCTTCCATTCGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012038-exon-sc0000136-1491911889:453062..453196 | TCONS_00012038-exon-sc0000136-1491911889:453062..453196 | Clytia hemisphaerica | exon |
| TCONS_00012038-exon-sc0000136-1510915933:453062..453196 | TCONS_00012038-exon-sc0000136-1510915933:453062..453196 | Clytia hemisphaerica | exon |
| TCONS_00012038-exon-sc0000136-1575043694:453062..453196 | TCONS_00012038-exon-sc0000136-1575043694:453062..453196 | Clytia hemisphaerica | exon |
| TCONS_00012038-exon-sc0000136-1491911889:453632..453710 | TCONS_00012038-exon-sc0000136-1491911889:453632..453710 | Clytia hemisphaerica | exon |
| TCONS_00012038-exon-sc0000136-1510915933:453632..453710 | TCONS_00012038-exon-sc0000136-1510915933:453632..453710 | Clytia hemisphaerica | exon |
| TCONS_00012038-exon-sc0000136-1575043694:453632..453710 | TCONS_00012038-exon-sc0000136-1575043694:453632..453710 | Clytia hemisphaerica | exon |
| TCONS_00012038-exon-sc0000136-1491911889:458248..458511 | TCONS_00012038-exon-sc0000136-1491911889:458248..458511 | Clytia hemisphaerica | exon |
| TCONS_00012038-exon-sc0000136-1510915933:458248..458511 | TCONS_00012038-exon-sc0000136-1510915933:458248..458511 | Clytia hemisphaerica | exon |
| TCONS_00012038-exon-sc0000136-1575043694:458248..458511 | TCONS_00012038-exon-sc0000136-1575043694:458248..458511 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000136 | supercontig | sc0000136:453062..458511 + |
Blast
The following BLAST results are available for this feature:
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