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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011992 ID=TCONS_00011992|Name=TCONS_00011992|organism=Clytia hemisphaerica|type=transcript|length=2421bp
CTCTTTTAATTAACAAACGATGTGAAAGAGAAAGTCGTTTTTGATTGATG
TTTCTGACGTTTTGCATTTGCTCATCAAGTTTAcagaaattgtttttatt
tgtcaAAACACTTTTGACAGACGTCTCTCTTTTGTCTGAAGACAGTTTTG
AATACGTCATGAAAGAGTGAAAGGACAAGCTAAACCTGTTTTTGACGAAC
AGTTTGTACGTCAAATTAGACGTAATTTACAAGATACTGAAAGTAGGGAT
ATGAGGCTCATTATAAAAGCACTGCATTCGGTTTGGAAAAGTCAGAGTTA
AACGGACAAACATTACTCAAACAACATTTGAATTGGAAGtacatattttt
ggaaaatgggAAGCTGGATTTCATTCGATAAAGACCACGAATCAGTTGCG
AAAGTCAAGCAATATTGTGAATCAGTCGTTTTTGTGCAATTCTACGGACA
GACGAATGACCTAAAGGGTTCCACTGATAACATCACTGGAAAACCAAAAT
CGAAGCTTGGCCACTTGCTCAGTGAACTTGATAAAGAGGTTCGAAAGGCT
TCGAAAATTGAGGAATTAGAAATCACGGAATCAATGAGGAATATTTTAAG
GAAAATGGCAGAGATCAGAGTTTGCATGGCGGATTGTGAAACTGTCGAAG
ATTGTCATCAAAAGCTGTTGAATGACGCCGAACGATTCCAAGCGATTTAC
CGAAAACGTGGTCATGAATCGGAAGTTCTGGAAGAAAAACACTCGTTTTA
TTGGGGTACACGACAACAGCTTCTATTCGGAAAAGTCATTTGTGATTGGC
TTGCTACGCAAAATAGTGAAAAAGCACCGATGGACCCTATATTTGGTACT
CTCCTTAACCCGACTGGAGGACGAGTTGGTCCAGGCGATACCGGATTTTT
CCACGACTCCCTTTTTGACGATATGGGTCCCTTTGCTTATCATTCAGCAG
TTCACGACGGTTTCGGTTACTTAATAACAAACCACAAGACTGGACCTGGG
TACGCTTACCTCAATAAAGGTCTTTTTGGCGATTGGAGCCCGTTTGGTGG
CCAACTTTATGGTATCAAATATTGGGAGAAAATATGCCAAAAATACCATC
CTGATAGAGCAACTTTGgaacaatttatttttttatgatttcaagTAGTA
AGttgttattttaatttttgagtaAATTCTTATTTTGATGGTTATGTAAA
CATGTAAATATATTATTTGGATATTTAGTTGTACTATTATTCAGTTGACC
AGTTTTACGGTCCAAGTTTGTATATATAatgaaaagtaatttttcaagta
ttttgaaatataattatTAAGTATCACTCGCTTTATGTTTTACCTGCGTT
TTAAATGTTTAGTGTTTAGGTGTTTTCTGATTTTACTGTTTTCTAATTTT
AACTGGCCATTACAACTAAATCATTCTAAATCCATTCAAATCTAAACATT
TGAGGATGCAAAGAGaatgtatttcttttcatttattcATTACCGTCGAA
CTTGACATCAGAACTAAAAACAACAGATTATATTTCTATTGGAGACTTGC
ATCCGTTTCTGAGTACACTGATCAGAGTATGAGGCTTTTACCCCGGGGTA
GTAGCACTTAGGTAAAAATGGGTGCTAGGTATGTGAAAACGATAAGCGTC
GGTTTCTTCTTCcaaagtctttctaagggttacaaaaatcagagtagtct
ctctaaggatcgGTAGATTCAcagttttagaaattttgtttgacCGATCt
cgagagaaaatttttcaaaaaagtctctttaggcgagaccaatctaattt
gttgttctacgggtcCGACCGATCctaattttgctaaaatcaaaaaaata
ataatattgaatttccactacaacatattttacacactagttatttgtaa
gaatcaaatttgaataaagctgaaaattaattcaagaaattgaaaaattt
agaaaatcaagcagtacactaaaattttatcatgatcttcatcgaagata
aaaaaagtgcatttttgaaccagataatttttggaaaacattttcggtac
tttaccaaccctgataaataaaaaattcattctTATTTCACCGACCGAGC
Agcgacccatattttgctaatgacctgcccgtagaacaacaaattaaatt
ggtctcgccttagagGGCACTTTTTCACCAAAAATTTGTTCACTCTAAGG
GTTGGTTTTTGGAGTCTCGTCtgcgaggggcaaatcactcgaaaaatggt
gtacgagatttttgatttatgatttatttttgatttatgatttatttttg
atttatttttgatttatttttgatttatgatttattcatgatttattttt
gaattattttttatttatctctAATTTATGAATAGGAGTAATTTTatgga
atatttttttcaaattataac Run BLAST on NCBI protein sequence of TCONS_00011992-protein >TCONS_00011992-protein ID=TCONS_00011992-protein|Name=TCONS_00011992-protein|organism=Clytia hemisphaerica|type=polypeptide|length=260bp
MGSWISFDKDHESVAKVKQYCESVVFVQFYGQTNDLKGSTDNITGKPKSK
LGHLLSELDKEVRKASKIEELEITESMRNILRKMAEIRVCMADCETVEDC
HQKLLNDAERFQAIYRKRGHESEVLEEKHSFYWGTRQQLLFGKVICDWLA
TQNSEKAPMDPIFGTLLNPTGGRVGPGDTGFFHDSLFDDMGPFAYHSAVH
DGFGYLITNHKTGPGYAYLNKGLFGDWSPFGGQLYGIKYWEKICQKYHPD
RATLEQFIFL Run BLAST on NCBI transcript from alignment at sc0000134:483258..486580- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011992 ID=TCONS_00011992|Name=TCONS_00011992|organism=Clytia hemisphaerica|type=transcript|length=3323bp|location=Sequence derived from alignment at sc0000134:483258..486580- (Clytia hemisphaerica)
CTCTTTTAATTAACAAACGATGTGAAAGAGAAAGTCGTTTTTGATTGATG
TTTCTGACGTTTTGCATTTGCTCATCAAGTTTACAGAAATTGTTTTTATT
TGTCAAAACACTTTTGACAGACGTCTCTCTTTTGTCTGAAGACAGTTTTG
AATACGTCATGAAAGAGTGAAAGGACAAGCTAAACCTGTTTTTGACGAAC
AGTTTGTACGTCAAATTAGACGTAATTTACAAGATACTGAAAGTAGGGAT
ATGAGGCTCATTATAAAAGCACTGCATTCGGTTTGGAAAAGTCAGAGTTA
AACGGACAAACATTACTCAAACAACATTTGAATTGGAAGTACATATTTTT
GGAAAATGGGAAGCTGGATTTCATTCGATAAAGACCACGAATCAGTTGCG
AAAGTCAAGCAATATTGTGAATCAGTCGTTTTTGTGCAATTCTACGGACA
GACGAATGACCTAAAGGTATGTTTTCACTACTGTCCTTTCGTTTAACATA
AAAAAGTAGCTACCCTGTCACAACACTTTAAAACTCCGAAATATCTGCGT
CTCCTCAGGGTAATATTCTGACATCTGACCAGATCTGACAATATCATCAT
AGGCCATTTCACAGTCGAACTGAATCATGGTTAATCAGGAATTGTTGCGC
TCTAATATTGGCTAAACGGAAAAGTCTTTATAATTTTTCCAAACTTTGGA
CTAATAGTAAGTCTTCATTGGTGCGCAGTTGTTCCGATTACCCATTGCGC
CTTGCGAGTGTGAAATGGCCTAATGATGCAAGGAAAGTGTGTGATTCAGC
AAGATAAGACAATCACTCTCGTGCTTCTATTCAGGGTTCCACTGATAACA
TCACTGGAAAACCAAAATCGAAGCTTGGCCACTTGCTCAGTGAACTTGAT
AAAGAGGTTCGAAAGGCTTCGAAAATTGAGGAATTAGAAATCACGGAATC
AATGAGGAATATTTTAAGGAAAATGGCAGAGATCAGAGTTTGCATGGCGG
ATTGTGAAACTGTCGAAGATTGTCATCAAAAGCTGTTGAATGACGCCGAA
CGATTCCAAGCGATTTACCGAAAACGTGGTCGTAAGTCATTTTATTTTCT
ATGTTTTATCAAGTATACATGATCAAAGTTAGATAAGGCTCTGTTTGAAT
TTATCAATCACCACTTTCCCGTGATAAAACTTCTGCGCTTTGGTTCATAA
GTATTGATTCTCCCTGTTTAACTTAGCTCACTTTATTTACATTTACAACA
ACCTTTTTTTAGATGAATCGGAAGTTCTGGAAGAAAAANTAACTTAGCTC
ACTTTATTTACCTTTACAACAACCTTTTTTTAGATGAATCGGAAGTTCTG
GAAGAAAAACACTCGTTTTATTGGGGTACACGACAACAGCTTCTATTCGG
AAAAGTCATTTGTGATTGGCTTGCTACGCAAAATAGTGAAAAAGCACCGA
TGGACCCTATATTTGGTACTCTCCTTAACCCGACTGGAGGTAGGTTTGAT
TGTTTTTATTGTAAATTGAGAATCACATGACTTTTGAAATAGGAGTTCAA
TATGTAGTTCAATAATATTAAAGATTTTATTAAAGTCTATGTATGACGAG
AAAAGTTTTATCTTTATCGAGAATTTTTATACTAACTAACTATAATAAAA
TGTTGGCACAATATCTATGTTTCAAACTCAGAGTTTCATGGTGCTCAGGC
ACCAATTATCAGTGAAAATCTTATACTATCTAAATATACTTTAATTAATA
TAATCATGATTTCCTTTTTAGGACGAGTTGGTCCAGGCGATACCGGATTT
TTCCACGACTCCCTTTTTGACGATATGGGTCCCTTTGCTTATCATTCAGC
AGTTCACGACGGTTTCGGTTACTTAATAACAAACCACAAGACTGGACCTG
GGTACGCTTACCTCAATAAAGGTCTTTTTGGCGATTGGAGCCCGTTTGGT
GGCCAACTTTATGGTATCAAATATTGGGAGAAAATATGCCAAAAATACCA
TCCTGATAGAGCAACTTTGGAACAATTTATTTTTTTATGATTTCAAGTAG
TAAGTTGTTATTTTAATTTTTGAGTAAATTCTTATTTTGATGGTTATGTA
AACATGTAAATATATTATTTGGATATTTAGTTGTACTATTATTCAGTTGA
CCAGTTTTACGGTCCAAGTTTGTATATATAATGAAAAGTAATTTTTCAAG
TATTTTGAAATATAATTATTAAGTATCACTCGCTTTATGTTTTACCTGCG
TTTTAAATGTTTAGTGTTTAGGTGTTTTCTGATTTTACTGTTTTCTAATT
TTAACTGGCCATTACAACTAAATCATTCTAAATCCATTCAAATCTAAACA
TTTGAGGATGCAAAGAGAATGTATTTCTTTTCATTTATTCATTACCGTCG
AACTTGACATCAGAACTAAAAACAACAGATTATATTTCTATTGGAGACTT
GCATCCGTTTCTGAGTACACTGATCAGAGTATGAGGCTTTTACCCCGGGG
TAGTAGCACTTAGGTAAAAATGGGTGCTAGGTATGTGAAAACGATAAGCG
TCGGTTTCTTCTTCCAAAGTCTTTCTAAGGGTTACAAAAATCAGAGTAGT
CTCTCTAAGGATCGGTAGATTCACAGTTTTAGAAATTTTGTTTGACCGAT
CTCGAGAGAAAATTTTTCAAAAAAGTCTCTTTAGGCGAGACCAATCTAAT
TTGTTGTTCTACGGGTCCGACCGATCCTAATTTTGCTAAAATCAAAAAAA
TAATAATATTGAATTTCCACTACAACATATTTTACACACTAGTTATTTGT
AAGAATCAAATTTGAATAAAGCTGAAAATTAATTCAAGAAATTGAAAAAT
TTAGAAAATCAAGCAGTACACTAAAATTTTATCATGATCTTCATCGAAGA
TAAAAAAAGTGCATTTTTGAACCAGATAATTTTTGGAAAACATTTTCGGT
ACTTTACCAACCCTGATAAATAAAAAATTCATTCTTATTTCACCGACCGA
GCAGCGACCCATATTTTGCTAATGACCTGCCCGTAGAACAACAAATTAAA
TTGGTCTCGCCTTAGAGGGCACTTTTTCACCAAAAATTTGTTCACTCTAA
GGGTTGGTTTTTGGAGTCTCGTCTGCGAGGGGCAAATCACTCGAAAAATG
GTGTACGAGATTTTTGATTTATGATTTATTTTTGATTTATGATTTATTTT
TGATTTATTTTTGATTTATTTTTGATTTATGATTTATTCATGATTTATTT
TTGAATTATTTTTTATTTATCTCTAATTTATGAATAGGAGTAATTTTATG
GAATATTTTTTTCAAATTATAAC Coding sequence (CDS) from alignment at sc0000134:483258..486580- >TCONS_00011992 ID=TCONS_00011992|Name=TCONS_00011992|organism=Clytia hemisphaerica|type=CDS|length=3132bp|location=Sequence derived from alignment at sc0000134:483258..486580- (Clytia hemisphaerica)
GACGAGTTGGTCCAGGCGATACCGGATTTTTCCACGACTCCCTTTTTGAC
GATATGGGTCCCTTTGCTTATCATTCAGCAGTTCACGACGGTTTCGGTTA
CTTAATAACAAACCACAAGACTGGACCTGGGTACGCTTACCTCAATAAAG
GTCTTTTTGGCGATTGGAGCCCGTTTGGTGGCCAACTTTATGGTATCAAA
TATTGGGAGAAAATATGCCAAAAATACCATCCTGATAGAGCAACTTTGGA
ACAATTTATTTTTTTATGAATGAATCGGAAGTTCTGGAAGAAAAACACTC
GTTTTATTGGGGTACACGACAACAGCTTCTATTCGGAAAAGTCATTTGTG
ATTGGCTTGCTACGCAAAATAGTGAAAAAGCACCGATGGACCCTATATTT
GGTACTCTCCTTAACCCGACTGGAGGGTTCCACTGATAACATCACTGGAA
AACCAAAATCGAAGCTTGGCCACTTGCTCAGTGAACTTGATAAAGAGGTT
CGAAAGGCTTCGAAAATTGAGGAATTAGAAATCACGGAATCAATGAGGAA
TATTTTAAGGAAAATGGCAGAGATCAGAGTTTGCATGGCGGATTGTGAAA
CTGTCGAAGATTGTCATCAAAAGCTGTTGAATGACGCCGAACGATTCCAA
GCGATTTACCGAAAACGTGGTCATGGGAAGCTGGATTTCATTCGATAAAG
ACCACGAATCAGTTGCGAAAGTCAAGCAATATTGTGAATCAGTCGTTTTT
GTGCAATTCTACGGACAGACGAATGACCTAAAGGACGAGTTGGTCCAGGC
GATACCGGATTTTTCCACGACTCCCTTTTTGACGATATGGGTCCCTTTGC
TTATCATTCAGCAGTTCACGACGGTTTCGGTTACTTAATAACAAACCACA
AGACTGGACCTGGGTACGCTTACCTCAATAAAGGTCTTTTTGGCGATTGG
AGCCCGTTTGGTGGCCAACTTTATGGTATCAAATATTGGGAGAAAATATG
CCAAAAATACCATCCTGATAGAGCAACTTTGGAACAATTTATTTTTTTAT
GAATGAATCGGAAGTTCTGGAAGAAAAACACTCGTTTTATTGGGGTACAC
GACAACAGCTTCTATTCGGAAAAGTCATTTGTGATTGGCTTGCTACGCAA
AATAGTGAAAAAGCACCGATGGACCCTATATTTGGTACTCTCCTTAACCC
GACTGGAGGGTTCCACTGATAACATCACTGGAAAACCAAAATCGAAGCTT
GGCCACTTGCTCAGTGAACTTGATAAAGAGGTTCGAAAGGCTTCGAAAAT
TGAGGAATTAGAAATCACGGAATCAATGAGGAATATTTTAAGGAAAATGG
CAGAGATCAGAGTTTGCATGGCGGATTGTGAAACTGTCGAAGATTGTCAT
CAAAAGCTGTTGAATGACGCCGAACGATTCCAAGCGATTTACCGAAAACG
TGGTCATGGGAAGCTGGATTTCATTCGATAAAGACCACGAATCAGTTGCG
AAAGTCAAGCAATATTGTGAATCAGTCGTTTTTGTGCAATTCTACGGACA
GACGAATGACCTAAAGGACGAGTTGGTCCAGGCGATACCGGATTTTTCCA
CGACTCCCTTTTTGACGATATGGGTCCCTTTGCTTATCATTCAGCAGTTC
ACGACGGTTTCGGTTACTTAATAACAAACCACAAGACTGGACCTGGGTAC
GCTTACCTCAATAAAGGTCTTTTTGGCGATTGGAGCCCGTTTGGTGGCCA
ACTTTATGGTATCAAATATTGGGAGAAAATATGCCAAAAATACCATCCTG
ATAGAGCAACTTTGGAACAATTTATTTTTTTATGAATGAATCGGAAGTTC
TGGAAGAAAAACACTCGTTTTATTGGGGTACACGACAACAGCTTCTATTC
GGAAAAGTCATTTGTGATTGGCTTGCTACGCAAAATAGTGAAAAAGCACC
GATGGACCCTATATTTGGTACTCTCCTTAACCCGACTGGAGGGTTCCACT
GATAACATCACTGGAAAACCAAAATCGAAGCTTGGCCACTTGCTCAGTGA
ACTTGATAAAGAGGTTCGAAAGGCTTCGAAAATTGAGGAATTAGAAATCA
CGGAATCAATGAGGAATATTTTAAGGAAAATGGCAGAGATCAGAGTTTGC
ATGGCGGATTGTGAAACTGTCGAAGATTGTCATCAAAAGCTGTTGAATGA
CGCCGAACGATTCCAAGCGATTTACCGAAAACGTGGTCATGGGAAGCTGG
ATTTCATTCGATAAAGACCACGAATCAGTTGCGAAAGTCAAGCAATATTG
TGAATCAGTCGTTTTTGTGCAATTCTACGGACAGACGAATGACCTAAAGG
ACGAGTTGGTCCAGGCGATACCGGATTTTTCCACGACTCCCTTTTTGACG
ATATGGGTCCCTTTGCTTATCATTCAGCAGTTCACGACGGTTTCGGTTAC
TTAATAACAAACCACAAGACTGGACCTGGGTACGCTTACCTCAATAAAGG
TCTTTTTGGCGATTGGAGCCCGTTTGGTGGCCAACTTTATGGTATCAAAT
ATTGGGAGAAAATATGCCAAAAATACCATCCTGATAGAGCAACTTTGGAA
CAATTTATTTTTTTATGAATGAATCGGAAGTTCTGGAAGAAAAACACTCG
TTTTATTGGGGTACACGACAACAGCTTCTATTCGGAAAAGTCATTTGTGA
TTGGCTTGCTACGCAAAATAGTGAAAAAGCACCGATGGACCCTATATTTG
GTACTCTCCTTAACCCGACTGGAGGGTTCCACTGATAACATCACTGGAAA
ACCAAAATCGAAGCTTGGCCACTTGCTCAGTGAACTTGATAAAGAGGTTC
GAAAGGCTTCGAAAATTGAGGAATTAGAAATCACGGAATCAATGAGGAAT
ATTTTAAGGAAAATGGCAGAGATCAGAGTTTGCATGGCGGATTGTGAAAC
TGTCGAAGATTGTCATCAAAAGCTGTTGAATGACGCCGAACGATTCCAAG
CGATTTACCGAAAACGTGGTCATGGGAAGCTGGATTTCATTCGATAAAGA
CCACGAATCAGTTGCGAAAGTCAAGCAATATTGTGAATCAGTCGTTTTTG
TGCAATTCTACGGACAGACGAATGACCTAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011992-exon-sc0000134-1575043694:486115..486580 | TCONS_00011992-exon-sc0000134-1575043694:486115..486580 | Clytia hemisphaerica | exon |
| TCONS_00011992-exon-sc0000134-1575043694:485500..485746 | TCONS_00011992-exon-sc0000134-1575043694:485500..485746 | Clytia hemisphaerica | exon |
| TCONS_00011992-exon-sc0000134-1575043694:485092..485247 | TCONS_00011992-exon-sc0000134-1575043694:485092..485247 | Clytia hemisphaerica | exon |
| TCONS_00011992-exon-sc0000134-1575043694:483258..484809 | TCONS_00011992-exon-sc0000134-1575043694:483258..484809 | Clytia hemisphaerica | exon |
| TCONS_00011992-exon-sc0000134-1510915933:486115..486580 | TCONS_00011992-exon-sc0000134-1510915933:486115..486580 | Clytia hemisphaerica | exon |
| TCONS_00011992-exon-sc0000134-1510915933:485500..485746 | TCONS_00011992-exon-sc0000134-1510915933:485500..485746 | Clytia hemisphaerica | exon |
| TCONS_00011992-exon-sc0000134-1510915933:485092..485247 | TCONS_00011992-exon-sc0000134-1510915933:485092..485247 | Clytia hemisphaerica | exon |
| TCONS_00011992-exon-sc0000134-1510915933:483258..484809 | TCONS_00011992-exon-sc0000134-1510915933:483258..484809 | Clytia hemisphaerica | exon |
| TCONS_00011992-exon-sc0000134-1491911889:486115..486580 | TCONS_00011992-exon-sc0000134-1491911889:486115..486580 | Clytia hemisphaerica | exon |
| TCONS_00011992-exon-sc0000134-1491911889:485500..485746 | TCONS_00011992-exon-sc0000134-1491911889:485500..485746 | Clytia hemisphaerica | exon |
| TCONS_00011992-exon-sc0000134-1491911889:485092..485247 | TCONS_00011992-exon-sc0000134-1491911889:485092..485247 | Clytia hemisphaerica | exon |
| TCONS_00011992-exon-sc0000134-1491911889:483258..484809 | TCONS_00011992-exon-sc0000134-1491911889:483258..484809 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000134 | supercontig | sc0000134:483258..486580 - |
Blast
The following BLAST results are available for this feature:
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